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Oryza sativa
cluster # 3517 cluster # 3517       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3517#0 length = 717 sequences # 1  
consensus_3517#1 length = 637 sequences # 1  

consensusID : consensus_3517#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 717
fasta sequence
                              [CTGCAAAATTGTACTGCATCAAAATGGTTTATTACTGATCGATCGTCTCTCGATCTGAATTTCGTTTTCACTCCTGAAATCCAAGAACTTGTCAGGCTTGTCCTGCAGCTTCAGTTTTTGACTTGTCAAAATTACAAGATAAGTGCAAGTATTAATCACACTGACTTGCTGGCTAGTGGCTACACTCTTGAGCTGGTAGTACAGTATCTACTAATAATTGGCAGCTAGGTTACTGTAGCTGTCGTAGATTGGCTCAAGCTAGCTGCGGCCATGGCGACCTTGCTGCTGCTGGCCGTGGCGGCGGCGGCGGCCGCCTTGGTTTTGTGGGGGCCGTACCCTTTGCCGGCGCCGGCCGTGGCCAAGAAGCTGGCCGCCATGGGGTTCCGGGCCCCCCGCCCGCGGGTTCTGCCGGGTTGCAACAACAAGTTCCGCGGCGAAAGCGAAGCGAAGCCGAANGGCTTGCCATNGANTTCGGGAAAAAAATACTCCCCGCTTTTTCCCCNTTCTCCCTGAAAGACTTTTNGTACCCCCCCCTTGNCNCCAAAAGAAAGGANACGNAAAATTTCCTGGCTTANCCAAGCTNANGAAAATTCCTGCCCNTTTTTCCCAATGCGGATCGNNAAAAAAAGCCAAACNCCTTGCCCTAATTAATTCCNANTCANACGCNGGTNNCNNAACNCNCCTNNCCGTTCGGTTCCCNTTTACCCANTCCCNAAN]

[+] EMBL BE229265             [CTGCAAAATTGTACTGCATCAAAATGGTTTATTACTGATCGATCGTCTCTCGATCTGAATTTCGTTTTCACTCCTGAAATCCAAGAACTTGTCAGGCTTGTCCTGCAGCTTCAGTTTTTGACTTGTCAAAATTACAAGATAAGTGCAAGTATTAATCACACTGACTTGCTGGCTAGTGGCTACACTCTTGAGCTGGTAGTACAGTATCTACTAATAATTGGCAGCTAGGTTACTGTAGCTGTCGTAGATTGGCTCAAGCTAGCTGCGGCCATGGCGACCTTGCTGCTGCTGGCCGTGGCGGCGGCGGCGGCCGCCTTGGTTTTGTGGGGGCCGTACCCTTTGCCGGCGCCGGCCGTGGCCAAGAAGCTGGCCGCCATGGGGTTCCGGGCCCCCCGCCCGCGGGTTCTGCCGGGTTGCAACAACAAGTTCCGCGGCGAAAGCGAAGCGAAGCCGAANGGCTTGCCATNGANTTCGGGAAAAAAATACTCCCCGCTTTTTCCCCNTTCTCCCTGAAAGACTTTTNGTACCCCCCCCTTGNCNCCAAAAGAAAGGANACGNAAAATTTCCTGGCTTANCCAAGCTNANGAAAATTCCTGCCCNTTTTTCCCAATGCGGATCGNNAAAAAAAGCCAAACNCCTTGCCCTAATTAATTCCNANTCANACGCNGGTNNCNNAACNCNCCTNNCCGTTCGGTTCCCNTTTACCCANTCCCNAAN]


>consensus_3517#0 CTGCAAAATTGTACTGCATCAAAATGGTTTATTACTGATCGATCGTCTCTCGATCTGAAT TTCGTTTTCACTCCTGAAATCCAAGAACTTGTCAGGCTTGTCCTGCAGCTTCAGTTTTTG ACTTGTCAAAATTACAAGATAAGTGCAAGTATTAATCACACTGACTTGCTGGCTAGTGGC TACACTCTTGAGCTGGTAGTACAGTATCTACTAATAATTGGCAGCTAGGTTACTGTAGCT GTCGTAGATTGGCTCAAGCTAGCTGCGGCCATGGCGACCTTGCTGCTGCTGGCCGTGGCG GCGGCGGCGGCCGCCTTGGTTTTGTGGGGGCCGTACCCTTTGCCGGCGCCGGCCGTGGCC AAGAAGCTGGCCGCCATGGGGTTCCGGGCCCCCCGCCCGCGGGTTCTGCCGGGTTGCAAC AACAAGTTCCGCGGCGAAAGCGAAGCGAAGCCGAANGGCTTGCCATNGANTTCGGGAAAA AAATACTCCCCGCTTTTTCCCCNTTCTCCCTGAAAGACTTTTNGTACCCCCCCCTTGNCN CCAAAAGAAAGGANACGNAAAATTTCCTGGCTTANCCAAGCTNANGAAAATTCCTGCCCN TTTTTCCCAATGCGGATCGNNAAAAAAAGCCAAACNCCTTGCCCTAATTAATTCCNANTC ANACGCNGGTNNCNNAACNCNCCTNNCCGTTCGGTTCCCNTTTACCCANTCCCNAAN



consensusID : consensus_3517#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 637
fasta sequence
                              [TTTTTTTTTTTACTGGATCAAAAGTGGTTTATTACTGATCGATCGTCTCTCGATCTGAATTTCGTTTTCACTCCTGAAATCCAAGAACTTGTCAGGCTTGTCCTGCAGCTTCAGTTTTGACTTGTCAAAATTACAAGATAAGTGCAAGTATTAATCACACTGACTTGCTGGCTAGGTGGCTACACTCTTGAGCTGGTAGTACAGTATCTACTAATAATNGGCAGCTAGGTTACTGTAGCTGTCGTAGATNGGCTCAAGCTAGCTGCGGCCATGGCGACCTTGCTGCTGCTGGCCGTGGCGGCGGCGGCGGGGCGTGGGTGTGGTGGGGGCGGTACGCGTGGCGGGCGCGGGCGGTGGCGAGGAGGCTGGCGGCGCAGGGGGTGCGGGGCCCGCGGCGCGGCGGGTTGCTGCGGGGTTGCAACGAGAGGTGCGGGGCGGAAGGGGGAGGCGGAGGCGGACGGGGTGGCATGGACGTCGGGACACGATACCTCCGCGGTCGTACCGCACTTCGTCGCCTGGAAGAACTGGACGGGTAGGACCCCCCTTCTGGGCTTCAGAACGGAATGGATACGGGGAAGACCTACTGGGGTGAAGCTCAAGGTTGCANGGCAACGGTCTGGCCANGGNGTATCCGAAG]

[-] EMBL BI806370             [TTTTTTTTTTTACTGGATCAAAAGTGGTTTATTACTGATCGATCGTCTCTCGATCTGAATTTCGTTTTCACTCCTGAAATCCAAGAACTTGTCAGGCTTGTCCTGCAGCTTCAGTTTTGACTTGTCAAAATTACAAGATAAGTGCAAGTATTAATCACACTGACTTGCTGGCTAGGTGGCTACACTCTTGAGCTGGTAGTACAGTATCTACTAATAATNGGCAGCTAGGTTACTGTAGCTGTCGTAGATNGGCTCAAGCTAGCTGCGGCCATGGCGACCTTGCTGCTGCTGGCCGTGGCGGCGGCGGCGGGGCGTGGGTGTGGTGGGGGCGGTACGCGTGGCGGGCGCGGGCGGTGGCGAGGAGGCTGGCGGCGCAGGGGGTGCGGGGCCCGCGGCGCGGCGGGTTGCTGCGGGGTTGCAACGAGAGGTGCGGGGCGGAAGGGGGAGGCGGAGGCGGACGGGGTGGCATGGACGTCGGGACACGATACCTCCGCGGTCGTACCGCACTTCGTCGCCTGGAAGAACTGGACGGGTAGGACCCCCCTTCTGGGCTTCAGAACGGAATGGATACGGGGAAGACCTACTGGGGTGAAGCTCAAGGTTGCANGGCAACGGTCTGGCCANGGNGTATCCGAAG]


>consensus_3517#1 TTTTTTTTTTTACTGGATCAAAAGTGGTTTATTACTGATCGATCGTCTCTCGATCTGAAT TTCGTTTTCACTCCTGAAATCCAAGAACTTGTCAGGCTTGTCCTGCAGCTTCAGTTTTGA CTTGTCAAAATTACAAGATAAGTGCAAGTATTAATCACACTGACTTGCTGGCTAGGTGGC TACACTCTTGAGCTGGTAGTACAGTATCTACTAATAATNGGCAGCTAGGTTACTGTAGCT GTCGTAGATNGGCTCAAGCTAGCTGCGGCCATGGCGACCTTGCTGCTGCTGGCCGTGGCG GCGGCGGCGGGGCGTGGGTGTGGTGGGGGCGGTACGCGTGGCGGGCGCGGGCGGTGGCGA GGAGGCTGGCGGCGCAGGGGGTGCGGGGCCCGCGGCGCGGCGGGTTGCTGCGGGGTTGCA ACGAGAGGTGCGGGGCGGAAGGGGGAGGCGGAGGCGGACGGGGTGGCATGGACGTCGGGA CACGATACCTCCGCGGTCGTACCGCACTTCGTCGCCTGGAAGAACTGGACGGGTAGGACC CCCCTTCTGGGCTTCAGAACGGAATGGATACGGGGAAGACCTACTGGGGTGAAGCTCAAG GTTGCANGGCAACGGTCTGGCCANGGNGTATCCGAAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3517#0      CTGCAAAATTGTACTGCATCAAAA-TGGTTTATTACTGATCGATCGTCTCTCGATCTGAA 59
consensus_3517#1      -TTTTTTTTTTTACTGGATCAAAAGTGGTTTATTACTGATCGATCGTCTCTCGATCTGAA 59
                       *      ** ***** ******* ***********************************

consensus_3517#0      TTTCGTTTTCACTCCTGAAATCCAAGAACTTGTCAGGCTTGTCCTGCAGCTTCAGTTTTT 119
consensus_3517#1      TTTCGTTTTCACTCCTGAAATCCAAGAACTTGTCAGGCTTGTCCTGCAGCTTCAGTTTT- 118
                      *********************************************************** 

consensus_3517#0      GACTTGTCAAAATTACAAGATAAGTGCAAGTATTAATCACACTGACTTGCTGGCTAG-TG 178
consensus_3517#1      GACTTGTCAAAATTACAAGATAAGTGCAAGTATTAATCACACTGACTTGCTGGCTAGGTG 178
                      ********************************************************* **

consensus_3517#0      GCTACACTCTTGAGCTGGTAGTACAGTATCTACTAATAATTGGCAGCTAGGTTACTGTAG 238
consensus_3517#1      GCTACACTCTTGAGCTGGTAGTACAGTATCTACTAATAATNGGCAGCTAGGTTACTGTAG 238
                      **************************************** *******************

consensus_3517#0      CTGTCGTAGATTGGCTCAAGCTAGCTGCGGCCATGGCGACCTTGCTGCTGCTGGCCGTGG 298
consensus_3517#1      CTGTCGTAGATNGGCTCAAGCTAGCTGCGGCCATGGCGACCTTGCTGCTGCTGGCCGTGG 298
                      *********** ************************************************

consensus_3517#0      CGGCGGCGGCGGCCGCCTTGGTTTTGTGGGGGCCGTACCCTTTGCCGGCGCCGGCCGTGG 358
consensus_3517#1      CGGCGGCGGCGGG-GCGTGGGTGTGGTGGGGGCGGTACGCGTGGCGGGCGCGGGCGGTGG 357
                      ************  ** * *** * ******** **** * * ** ***** *** ****

consensus_3517#0      CCAAGAAGCTGGCCGC-CATGGGGTTCCGGGCCCCCCGCCCG-CGGGTT-CTGCCGGGTT 415
consensus_3517#1      CGAGGAGGCTGGCGGCGCAGGGGGTGCGGGGCCCGCGGCGCGGCGGGTTGCTGCGGGGTT 417
                      * * ** ****** ** ** ***** * ****** * ** ** ****** **** *****

consensus_3517#0      GCAACAACAAGTTCCGCGGCGAAAGCGAAG-CGAAGCCGAANGGCTTGCCATNGANTTCG 474
consensus_3517#1      GCAACGAGAGGTGCGGGGCGGAAGGGGGAGGCGGAGGCGGACGGGGTGGCATGGACGTCG 477
                      ***** * * ** * * *  *** * * ** ** ** ** * **  ** *** **  ***

consensus_3517#0      GGAAAAAAATACTCCCCGCTTTTTCCCCNTTCTC---CCTGAAAGACTT-------TTNG 524
consensus_3517#1      GGACACGATACCTCCGCGGTCGTACCGCACTTCGTCGCCTGGAAGAACTGGACGGGTAGG 537
                      *** *  *   **** ** *  * ** *  *      **** ****  *       *  *

consensus_3517#0      TACCCCCCCCTTGNCNCCAAAA--GAAAGGANACGNAAAATTTCCTGGCTTANCCAAGCT 582
consensus_3517#1      ACCCCCCTTCTGGGCTTCAGAACGGAATGGATACGGGGAAGA-CCTACTGGGGTGAAGCT 596
                        *****  ** * *  ** **  *** *** ***   **   ***         *****

consensus_3517#0      NANGAAAATTCCTGCCCNTTTTTCCCAATGCGGATCGNNAAAAAAAGCCAAACNCCTTGC 642
consensus_3517#1      CAAGGTTGCANGGCAACGGTCTGGCCANGGNGTATCCGAAG------------------- 637
                       * *            *  * *  ***  * * ***   *                    

consensus_3517#0      CCTAATTAATTCCNANTCANACGCNGGTNNCNNAACNCNCCTNNCCGTTCGGTTCCCNTT 702
consensus_3517#1      ------------------------------------------------------------
                                                                                  

consensus_3517#0      TACCCANTCCCNAAN 717
consensus_3517#1      ---------------
                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)