cluster # 353

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Oryza sativa
cluster # 353 cluster # 353 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_353#0 length = 817 sequences # 1

consensus_353#1 length = 606 sequences # 1

consensusID : consensus_353#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 817
fasta sequence

                              [CCCTTAATTTATGATAAGGGAAAAAAAAGGGTAAATGTTATGCGCACAATGAGAACATCAAGTACCATGCGTTCAGTAAACCAAAACAATTCTCCAACATATGAAGGAAAAAAAAAGAGAAATAAAAACCCCGAAAACTTCTCTATATGCACAATTCTCACTTCGAGACCCCGAATCATGCTCATCAGAAGATCAGATTATACACAGGTATGAATGAATCACAAATTCTTCGAAAGAATCGGTGTAATTTCAGTTCTACACGACAACATTCTCCTCGAACCCTTCTGGCTCCGGAGCAATCTCCCTGGAAGCCCTCTTGAAGGAGAAGGAAGTCTCTCCTCCGCTTCCATGTGATCTAGTTGAATGTTTCCTGTCAAGCATTTGCCCTGACGACGACGCGGTTTCAAGGCTCTGGTACCGGTTTCCTTGAAGGAAAGCAGACTGCCAGGAGCTCCGGGATGATGAGCTCCTGAGTCTTGCTGAATTGGAGCGGGACGCCATTCGCAGAATCTTTAGCGGGTTCTCCAGGGCTCTCAGGACGTACCGAGCAGAAGGCCGCCTTGATGGCTTTGAATTCAGGCATGTCTTCGCGACGATTGCCATGGCCCACACCTCTTCGAGATGATCCTCATCGACAATAAGCAAAGGATCGATGATCCTAGAAATGCTCTCCTTGTCGTTCATGTCGATGCGGTTTAGTGTGTTTGTCATCCACTCTTCGGAGGCAGCATCGTTTGATCCACTTACACCAAAGTTGCCTGTTACTAGTTCAAGCATCACCTTTCCAAGCAGTAAACATCATAAGAACAAGTTGCTG]

[+] EMBL CB634038             [CCCTTAATTTATGATAAGGGAAAAAAAAGGGTAAATGTTATGCGCACAATGAGAACATCAAGTACCATGCGTTCAGTAAACCAAAACAATTCTCCAACATATGAAGGAAAAAAAAAGAGAAATAAAAACCCCGAAAACTTCTCTATATGCACAATTCTCACTTCGAGACCCCGAATCATGCTCATCAGAAGATCAGATTATACACAGGTATGAATGAATCACAAATTCTTCGAAAGAATCGGTGTAATTTCAGTTCTACACGACAACATTCTCCTCGAACCCTTCTGGCTCCGGAGCAATCTCCCTGGAAGCCCTCTTGAAGGAGAAGGAAGTCTCTCCTCCGCTTCCATGTGATCTAGTTGAATGTTTCCTGTCAAGCATTTGCCCTGACGACGACGCGGTTTCAAGGCTCTGGTACCGGTTTCCTTGAAGGAAAGCAGACTGCCAGGAGCTCCGGGATGATGAGCTCCTGAGTCTTGCTGAATTGGAGCGGGACGCCATTCGCAGAATCTTTAGCGGGTTCTCCAGGGCTCTCAGGACGTACCGAGCAGAAGGCCGCCTTGATGGCTTTGAATTCAGGCATGTCTTCGCGACGATTGCCATGGCCCACACCTCTTCGAGATGATCCTCATCGACAATAAGCAAAGGATCGATGATCCTAGAAATGCTCTCCTTGTCGTTCATGTCGATGCGGTTTAGTGTGTTTGTCATCCACTCTTCGGAGGCAGCATCGTTTGATCCACTTACACCAAAGTTGCCTGTTACTAGTTCAAGCATCACCTTTCCAAGCAGTAAACATCATAAGAACAAGTTGCTG]




>consensus_353#0
CCCTTAATTTATGATAAGGGAAAAAAAAGGGTAAATGTTATGCGCACAATGAGAACATCA
AGTACCATGCGTTCAGTAAACCAAAACAATTCTCCAACATATGAAGGAAAAAAAAAGAGA
AATAAAAACCCCGAAAACTTCTCTATATGCACAATTCTCACTTCGAGACCCCGAATCATG
CTCATCAGAAGATCAGATTATACACAGGTATGAATGAATCACAAATTCTTCGAAAGAATC
GGTGTAATTTCAGTTCTACACGACAACATTCTCCTCGAACCCTTCTGGCTCCGGAGCAAT
CTCCCTGGAAGCCCTCTTGAAGGAGAAGGAAGTCTCTCCTCCGCTTCCATGTGATCTAGT
TGAATGTTTCCTGTCAAGCATTTGCCCTGACGACGACGCGGTTTCAAGGCTCTGGTACCG
GTTTCCTTGAAGGAAAGCAGACTGCCAGGAGCTCCGGGATGATGAGCTCCTGAGTCTTGC
TGAATTGGAGCGGGACGCCATTCGCAGAATCTTTAGCGGGTTCTCCAGGGCTCTCAGGAC
GTACCGAGCAGAAGGCCGCCTTGATGGCTTTGAATTCAGGCATGTCTTCGCGACGATTGC
CATGGCCCACACCTCTTCGAGATGATCCTCATCGACAATAAGCAAAGGATCGATGATCCT
AGAAATGCTCTCCTTGTCGTTCATGTCGATGCGGTTTAGTGTGTTTGTCATCCACTCTTC
GGAGGCAGCATCGTTTGATCCACTTACACCAAAGTTGCCTGTTACTAGTTCAAGCATCAC
CTTTCCAAGCAGTAAACATCATAAGAACAAGTTGCTG

consensusID : consensus_353#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 606
fasta sequence

                              [ACCTCGTGCCGGATCTGTTACGGGCAAAAAAGGGTAACTGTTATGCGCACAATGAGACCGTTCAGTCCCCTGCTTTCAGTAAACCACAACATTTTTCCAGCATCTGAAGGAAAAAAAACAGGAGAAATAAAAACCCCGCAAACTTGCTCTATATGCACAATTCTCGCTTCGAGACCCCGAATCATGCTCATCAGAAGATCAGCTTATACCCAGGTATGAATGAATCACAAATTCTTCGAAAGAATCGGTGTAATTTCAGTTCTACACGGCAACATTCTCCTCGAACCCTTCTGGCTCCGGAGCAATCTCCCTGGAAGCCCTCTTGAAGGAGAAGGAAGTCTCTCCTCCGCTTCCATGTGGATCTAGTTGAATGTTTCCTGTCAAGCATTTGCCCTGACGACGACGCGGTTTCAAGGCTCTGGTACCGGTTTCCTTGAAGGAAAGCAGACTGCCAGGAGCTCCGGGATGATGAGCTCCTGAGTCTTGCTGAATTGGAGCGGGACGCCATTCGCAGAATCTTTAGCGGGTTCTCCAGGGCTCTCAGAACGTACCGAGCAGAAGGCCGCCTTGATGGCTTTGAATTCAGGCATGTCTTCGCGACGATTG]

[-] EMBL CA755542             [ACCTCGTGCCGGATCTGTTACGGGCAAAAAAGGGTAACTGTTATGCGCACAATGAGACCGTTCAGTCCCCTGCTTTCAGTAAACCACAACATTTTTCCAGCATCTGAAGGAAAAAAAACAGGAGAAATAAAAACCCCGCAAACTTGCTCTATATGCACAATTCTCGCTTCGAGACCCCGAATCATGCTCATCAGAAGATCAGCTTATACCCAGGTATGAATGAATCACAAATTCTTCGAAAGAATCGGTGTAATTTCAGTTCTACACGGCAACATTCTCCTCGAACCCTTCTGGCTCCGGAGCAATCTCCCTGGAAGCCCTCTTGAAGGAGAAGGAAGTCTCTCCTCCGCTTCCATGTGGATCTAGTTGAATGTTTCCTGTCAAGCATTTGCCCTGACGACGACGCGGTTTCAAGGCTCTGGTACCGGTTTCCTTGAAGGAAAGCAGACTGCCAGGAGCTCCGGGATGATGAGCTCCTGAGTCTTGCTGAATTGGAGCGGGACGCCATTCGCAGAATCTTTAGCGGGTTCTCCAGGGCTCTCAGAACGTACCGAGCAGAAGGCCGCCTTGATGGCTTTGAATTCAGGCATGTCTTCGCGACGATTG]




>consensus_353#1
ACCTCGTGCCGGATCTGTTACGGGCAAAAAAGGGTAACTGTTATGCGCACAATGAGACCG
TTCAGTCCCCTGCTTTCAGTAAACCACAACATTTTTCCAGCATCTGAAGGAAAAAAAACA
GGAGAAATAAAAACCCCGCAAACTTGCTCTATATGCACAATTCTCGCTTCGAGACCCCGA
ATCATGCTCATCAGAAGATCAGCTTATACCCAGGTATGAATGAATCACAAATTCTTCGAA
AGAATCGGTGTAATTTCAGTTCTACACGGCAACATTCTCCTCGAACCCTTCTGGCTCCGG
AGCAATCTCCCTGGAAGCCCTCTTGAAGGAGAAGGAAGTCTCTCCTCCGCTTCCATGTGG
ATCTAGTTGAATGTTTCCTGTCAAGCATTTGCCCTGACGACGACGCGGTTTCAAGGCTCT
GGTACCGGTTTCCTTGAAGGAAAGCAGACTGCCAGGAGCTCCGGGATGATGAGCTCCTGA
GTCTTGCTGAATTGGAGCGGGACGCCATTCGCAGAATCTTTAGCGGGTTCTCCAGGGCTC
TCAGAACGTACCGAGCAGAAGGCCGCCTTGATGGCTTTGAATTCAGGCATGTCTTCGCGA
CGATTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_353#0      --CCCTTAATTTATG-ATAAGGGAAAAAAAAGGGTAAATGTTATGCGCACAATGAGAACA 57
consensus_353#1      ACCTCGTGCCGGATCTGTTACGGGCAAAAAAGGGTAACTGTTATGCGCACAATGAGACCG 60
                       * * *     **   * * **  ************ ******************* * 

consensus_353#0      TCAAGTACCATGCGTTCAGTAAACCAAAACAATTCTCCAACATATGAAGGAAAAAAAA-- 115
consensus_353#1      TTCAGTCCCCTGCTTTCAGTAAACCACAACATTTTTCCAGCATCTGAAGGAAAAAAAACA 120
                     *  *** ** *** ************ **** ** **** *** **************  

consensus_353#0      AGAGAAATAAAAACCCCGAAAACTT-CTCTATATGCACAATTCTCACTTCGAGACCCCGA 174
consensus_353#1      GGAGAAATAAAAACCCCGCAAACTTGCTCTATATGCACAATTCTCGCTTCGAGACCCCGA 180
                      ***************** ****** ******************* **************

consensus_353#0      ATCATGCTCATCAGAAGATCAGATTATACACAGGTATGAATGAATCACAAATTCTTCGAA 234
consensus_353#1      ATCATGCTCATCAGAAGATCAGCTTATACCCAGGTATGAATGAATCACAAATTCTTCGAA 240
                     ********************** ****** ******************************

consensus_353#0      AGAATCGGTGTAATTTCAGTTCTACACGACAACATTCTCCTCGAACCCTTCTGGCTCCGG 294
consensus_353#1      AGAATCGGTGTAATTTCAGTTCTACACGGCAACATTCTCCTCGAACCCTTCTGGCTCCGG 300
                     **************************** *******************************

consensus_353#0      AGCAATCTCCCTGGAAGCCCTCTTGAAGGAGAAGGAAGTCTCTCCTCCGCTTCCATGTG- 353
consensus_353#1      AGCAATCTCCCTGGAAGCCCTCTTGAAGGAGAAGGAAGTCTCTCCTCCGCTTCCATGTGG 360
                     *********************************************************** 

consensus_353#0      ATCTAGTTGAATGTTTCCTGTCAAGCATTTGCCCTGACGACGACGCGGTTTCAAGGCTCT 413
consensus_353#1      ATCTAGTTGAATGTTTCCTGTCAAGCATTTGCCCTGACGACGACGCGGTTTCAAGGCTCT 420
                     ************************************************************

consensus_353#0      GGTACCGGTTTCCTTGAAGGAAAGCAGACTGCCAGGAGCTCCGGGATGATGAGCTCCTGA 473
consensus_353#1      GGTACCGGTTTCCTTGAAGGAAAGCAGACTGCCAGGAGCTCCGGGATGATGAGCTCCTGA 480
                     ************************************************************

consensus_353#0      GTCTTGCTGAATTGGAGCGGGACGCCATTCGCAGAATCTTTAGCGGGTTCTCCAGGGCTC 533
consensus_353#1      GTCTTGCTGAATTGGAGCGGGACGCCATTCGCAGAATCTTTAGCGGGTTCTCCAGGGCTC 540
                     ************************************************************

consensus_353#0      TCAGGACGTACCGAGCAGAAGGCCGCCTTGATGGCTTTGAATTCAGGCATGTCTTCGCGA 593
consensus_353#1      TCAGAACGTACCGAGCAGAAGGCCGCCTTGATGGCTTTGAATTCAGGCATGTCTTCGCGA 600
                     **** *******************************************************

consensus_353#0      CGATTGCCATGGCCCACACCTCTTCGAGATGATCCTCATCGACAATAAGCAAAGGATCGA 653
consensus_353#1      CGATTG------------------------------------------------------ 606
                     ******                                                      

consensus_353#0      TGATCCTAGAAATGCTCTCCTTGTCGTTCATGTCGATGCGGTTTAGTGTGTTTGTCATCC 713
consensus_353#1      ------------------------------------------------------------
                                                                                 

consensus_353#0      ACTCTTCGGAGGCAGCATCGTTTGATCCACTTACACCAAAGTTGCCTGTTACTAGTTCAA 773
consensus_353#1      ------------------------------------------------------------
                                                                                 

consensus_353#0      GCATCACCTTTCCAAGCAGTAAACATCATAAGAACAAGTTGCTG 817
consensus_353#1      --------------------------------------------