cluster # 3540

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Oryza sativa
cluster # 3540 cluster # 3540 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3540#0 length = 168 sequences # 1

consensus_3540#1 length = 167 sequences # 1

consensusID : consensus_3540#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 168
fasta sequence

                              [CAAAACCCTTTCCTTTTTTTATTACACCAAAATGTCCCTGTTGTCCAAAACGCATGCAAATTAATTGGGCCCGCACCTTTTACACCCCTCTTGTTGCATGCAGCAATTTGGCCCTCCCATGACCTTGATTTACACACATGCCTTTGGACTCCTATGACATTGGGACCA]

[+] EMBL BI306454             [CAAAACCCTTTCCTTTTTTTATTACACCAAAATGTCCCTGTTGTCCAAAACGCATGCAAATTAATTGGGCCCGCACCTTTTACACCCCTCTTGTTGCATGCAGCAATTTGGCCCTCCCATGACCTTGATTTACACACATGCCTTTGGACTCCTATGACATTGGGACCA]




>consensus_3540#0
CAAAACCCTTTCCTTTTTTTATTACACCAAAATGTCCCTGTTGTCCAAAACGCATGCAAA
TTAATTGGGCCCGCACCTTTTACACCCCTCTTGTTGCATGCAGCAATTTGGCCCTCCCAT
GACCTTGATTTACACACATGCCTTTGGACTCCTATGACATTGGGACCA

consensusID : consensus_3540#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 167
fasta sequence

                              [AAATCCTTTCCTTTTTTTCTTACACCAGAGTGTCCCTCTTATCCGAGACGCGTGCAAATTAATTGGGCCCGCACCTTTTCACACGCCTCTTGTTGCATGCAGCAATCGGGCCCGCCCCTGAGCTTGTTTTCCACACATGCCTTTGTGCGCCGCTGCGATTGGGCCCG]

[+] EMBL BI305742             [AAATCCTTTCCTTTTTTTCTTACACCAGAGTGTCCCTCTTATCCGAGACGCGTGCAAATTAATTGGGCCCGCACCTTTTCACACGCCTCTTGTTGCATGCAGCAATCGGGCCCGCCCCTGAGCTTGTTTTCCACACATGCCTTTGTGCGCCGCTGCGATTGGGCCCG]




>consensus_3540#1
AAATCCTTTCCTTTTTTTCTTACACCAGAGTGTCCCTCTTATCCGAGACGCGTGCAAATT
AATTGGGCCCGCACCTTTTCACACGCCTCTTGTTGCATGCAGCAATCGGGCCCGCCCCTG
AGCTTGTTTTCCACACATGCCTTTGTGCGCCGCTGCGATTGGGCCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3540#0      CAAAACCCTTTCCTTTTTTTATTACACCAAAATGTCCCTGTTGTCCAAAACGCATGCAAA 60
consensus_3540#1      --AAATCCTTTCCTTTTTTTCTTACACCAGAGTGTCCCTCTTATCCGAGACGCGTGCAAA 58
                        *** ************** ******** * ******* ** *** * **** ******

consensus_3540#0      TTAATTGGGCCCGCACCTTTT-ACACCCCTCTTGTTGCATGCAGCAATTTGGCCCTCCCA 119
consensus_3540#1      TTAATTGGGCCCGCACCTTTTCACACGCCTCTTGTTGCATGCAGCAATCGGGCCCGCCCC 118
                      ********************* **** *********************  ***** *** 

consensus_3540#0      TGACCTTGATTTACACACATGCCTTTGGACTCCTATGACATTGGGACCA 168
consensus_3540#1      TGAGCTTGTTTTCCACACATGCCTTTGTGCGCCGCTGCGATTGGGCCCG 167
                      *** **** *** **************  * **  **  ****** **