cluster # 3552

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Oryza sativa
cluster # 3552 cluster # 3552 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3552#0 length = 616 sequences # 1

consensus_3552#1 length = 575 sequences # 1

consensusID : consensus_3552#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 616
fasta sequence

                              [GGAATCACTTTACAGAGCAAGTTCTGCTTTATCCTCAGCATGTCATTGTTTCAGACCAAAACTACACCTGCACTTAGTAAACTACATGCCTGCTCTTTCCGGTGGCAAAATTGAAGCGACCCAGGCTTCTGCATTCCGTAATCTGGGCGCTGTGTTTTCCATTTTCTACAGAAAAAATAGCAACAGAGTATCGAACAGGAACTTCTGTACAGCATACAAGTACAACACGCCGGGGCCTTTTGCAATCGTCCCTTCGGGAGAAAAAAGAGAAGGGAATAGCTACACCTCCGGTCCTGACGCAAAGAGGTTGACAAGGCCTCGGAAAGCTTGAACAGATACCTCACAGGCCTGAAGAAGTTCTCCGTCCAAGTTCCAGACACTTTCGTCATGTGACGATATAAAAGTAAATGCTTGTGTCTTATGATGTTCGACAAACTTGAAGCTCAGAGGATCTGAGCCCTTCTTGGTAAATTGTGTTAGATGCCTGCAGATAAGTCAGAACTCATAAGAACATACTCTGCAAACAGGGATAGTGACCAAATCTAGAAACTAATTTCTGAGTGAATTTAGCATGTTCTTTAGTTTGTGAAAACTACATAAAAGTGGAAATATACTA]

[+] EMBL CB620016             [GGAATCACTTTACAGAGCAAGTTCTGCTTTATCCTCAGCATGTCATTGTTTCAGACCAAAACTACACCTGCACTTAGTAAACTACATGCCTGCTCTTTCCGGTGGCAAAATTGAAGCGACCCAGGCTTCTGCATTCCGTAATCTGGGCGCTGTGTTTTCCATTTTCTACAGAAAAAATAGCAACAGAGTATCGAACAGGAACTTCTGTACAGCATACAAGTACAACACGCCGGGGCCTTTTGCAATCGTCCCTTCGGGAGAAAAAAGAGAAGGGAATAGCTACACCTCCGGTCCTGACGCAAAGAGGTTGACAAGGCCTCGGAAAGCTTGAACAGATACCTCACAGGCCTGAAGAAGTTCTCCGTCCAAGTTCCAGACACTTTCGTCATGTGACGATATAAAAGTAAATGCTTGTGTCTTATGATGTTCGACAAACTTGAAGCTCAGAGGATCTGAGCCCTTCTTGGTAAATTGTGTTAGATGCCTGCAGATAAGTCAGAACTCATAAGAACATACTCTGCAAACAGGGATAGTGACCAAATCTAGAAACTAATTTCTGAGTGAATTTAGCATGTTCTTTAGTTTGTGAAAACTACATAAAAGTGGAAATATACTA]




>consensus_3552#0
GGAATCACTTTACAGAGCAAGTTCTGCTTTATCCTCAGCATGTCATTGTTTCAGACCAAA
ACTACACCTGCACTTAGTAAACTACATGCCTGCTCTTTCCGGTGGCAAAATTGAAGCGAC
CCAGGCTTCTGCATTCCGTAATCTGGGCGCTGTGTTTTCCATTTTCTACAGAAAAAATAG
CAACAGAGTATCGAACAGGAACTTCTGTACAGCATACAAGTACAACACGCCGGGGCCTTT
TGCAATCGTCCCTTCGGGAGAAAAAAGAGAAGGGAATAGCTACACCTCCGGTCCTGACGC
AAAGAGGTTGACAAGGCCTCGGAAAGCTTGAACAGATACCTCACAGGCCTGAAGAAGTTC
TCCGTCCAAGTTCCAGACACTTTCGTCATGTGACGATATAAAAGTAAATGCTTGTGTCTT
ATGATGTTCGACAAACTTGAAGCTCAGAGGATCTGAGCCCTTCTTGGTAAATTGTGTTAG
ATGCCTGCAGATAAGTCAGAACTCATAAGAACATACTCTGCAAACAGGGATAGTGACCAA
ATCTAGAAACTAATTTCTGAGTGAATTTAGCATGTTCTTTAGTTTGTGAAAACTACATAA
AAGTGGAAATATACTA

consensusID : consensus_3552#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 575
fasta sequence

                              [CTTTTTTTTTTTTTGAAACGGAGAATTGGAATCACTTTACAGAGCAAGTTCTGCTTTATTACACAGCATGTCATTGTTTCAAACCAAAACTACTCCTGCACTTAGGGGGTGTTTGGGAACTTAAAGACTAAATTTAGTCTTTCTCACAAAATTATAAGTCCCTATGGTAGGGACTTATATTTTTGTGAGAGGGACTAAAGTTTAGTTCCACTTTAGTCCCTCCAACCAAACACCACCTTAGTAAACTACATGCCTGCTCTTTCCGGTGGCAAAATTGAAGCGACCCAGGCTTCTGCATTCCGTAATCTGGGCGCTGTGTTTTCCATTTTCTACAGAAAAAATAGCAACAGAGTATCGAACAGGAACTTCTGTACAGCATACAAGTACAACACGCCGGGGCCTTTTGCAATCGTCCCTTCGGGAGAAAAAAGAGAAGGGAATAGCTACACCTCCGGTCCTGACGCAAAGAGGTTGACAAGGCCTCGGAAAGCTTGAACAGATACCTCACAGGCCTGAAGAAGTTCTCCGTCCAAGTTCCAGACACTTTCGTCATGTGACGATATAAAAGTAAATGC]

[+] EMBL CB637886             [CTTTTTTTTTTTTTGAAACGGAGAATTGGAATCACTTTACAGAGCAAGTTCTGCTTTATTACACAGCATGTCATTGTTTCAAACCAAAACTACTCCTGCACTTAGGGGGTGTTTGGGAACTTAAAGACTAAATTTAGTCTTTCTCACAAAATTATAAGTCCCTATGGTAGGGACTTATATTTTTGTGAGAGGGACTAAAGTTTAGTTCCACTTTAGTCCCTCCAACCAAACACCACCTTAGTAAACTACATGCCTGCTCTTTCCGGTGGCAAAATTGAAGCGACCCAGGCTTCTGCATTCCGTAATCTGGGCGCTGTGTTTTCCATTTTCTACAGAAAAAATAGCAACAGAGTATCGAACAGGAACTTCTGTACAGCATACAAGTACAACACGCCGGGGCCTTTTGCAATCGTCCCTTCGGGAGAAAAAAGAGAAGGGAATAGCTACACCTCCGGTCCTGACGCAAAGAGGTTGACAAGGCCTCGGAAAGCTTGAACAGATACCTCACAGGCCTGAAGAAGTTCTCCGTCCAAGTTCCAGACACTTTCGTCATGTGACGATATAAAAGTAAATGC]




>consensus_3552#1
CTTTTTTTTTTTTTGAAACGGAGAATTGGAATCACTTTACAGAGCAAGTTCTGCTTTATT
ACACAGCATGTCATTGTTTCAAACCAAAACTACTCCTGCACTTAGGGGGTGTTTGGGAAC
TTAAAGACTAAATTTAGTCTTTCTCACAAAATTATAAGTCCCTATGGTAGGGACTTATAT
TTTTGTGAGAGGGACTAAAGTTTAGTTCCACTTTAGTCCCTCCAACCAAACACCACCTTA
GTAAACTACATGCCTGCTCTTTCCGGTGGCAAAATTGAAGCGACCCAGGCTTCTGCATTC
CGTAATCTGGGCGCTGTGTTTTCCATTTTCTACAGAAAAAATAGCAACAGAGTATCGAAC
AGGAACTTCTGTACAGCATACAAGTACAACACGCCGGGGCCTTTTGCAATCGTCCCTTCG
GGAGAAAAAAGAGAAGGGAATAGCTACACCTCCGGTCCTGACGCAAAGAGGTTGACAAGG
CCTCGGAAAGCTTGAACAGATACCTCACAGGCCTGAAGAAGTTCTCCGTCCAAGTTCCAG
ACACTTTCGTCATGTGACGATATAAAAGTAAATGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3552#0      ------------------------------------------------------------
consensus_3552#1      CTTTTTTTTTTTTTGAAACGGAGAATTGGAATCACTTTACAGAGCAAGTTCTGCTTTATT 60
                                                                                  

consensus_3552#0      ------------------------------------------------------------
consensus_3552#1      ACACAGCATGTCATTGTTTCAAACCAAAACTACTCCTGCACTTAGGGGGTGTTTGGGAAC 120
                                                                                  

consensus_3552#0      ----------------------------------GGAATCACTTTACAGAGCAAGTTCTG 26
consensus_3552#1      TTAAAGACTAAATTTAGTCTTTCTCACAAAATTATAAGTCCCTATGGTAGGGACTTATAT 180
                                                          * ** ** *     * *  *    

consensus_3552#0      CTTTAT--------CCTCAGCATGTCATTGTTTCAGACCAA--AACTACACCTGCACTTA 76
consensus_3552#1      TTTTGTGAGAGGGACTAAAGTTTAGTTCCACTTTAGTCCCTCCAACCAAACACCACCTTA 240
                       *** *        *   **  *        ** ** **    *** * **     ****

consensus_3552#0      GTAAACTACATGCCTGCTCTTTCCGGTGGCAAAATTGAAGCGACCCAGGCTTCTGCATTC 136
consensus_3552#1      GTAAACTACATGCCTGCTCTTTCCGGTGGCAAAATTGAAGCGACCCAGGCTTCTGCATTC 300
                      ************************************************************

consensus_3552#0      CGTAATCTGGGCGCTGTGTTTTCCATTTTCTACAGAAAAAATAGCAACAGAGTATCGAAC 196
consensus_3552#1      CGTAATCTGGGCGCTGTGTTTTCCATTTTCTACAGAAAAAATAGCAACAGAGTATCGAAC 360
                      ************************************************************

consensus_3552#0      AGGAACTTCTGTACAGCATACAAGTACAACACGCCGGGGCCTTTTGCAATCGTCCCTTCG 256
consensus_3552#1      AGGAACTTCTGTACAGCATACAAGTACAACACGCCGGGGCCTTTTGCAATCGTCCCTTCG 420
                      ************************************************************

consensus_3552#0      GGAGAAAAAAGAGAAGGGAATAGCTACACCTCCGGTCCTGACGCAAAGAGGTTGACAAGG 316
consensus_3552#1      GGAGAAAAAAGAGAAGGGAATAGCTACACCTCCGGTCCTGACGCAAAGAGGTTGACAAGG 480
                      ************************************************************

consensus_3552#0      CCTCGGAAAGCTTGAACAGATACCTCACAGGCCTGAAGAAGTTCTCCGTCCAAGTTCCAG 376
consensus_3552#1      CCTCGGAAAGCTTGAACAGATACCTCACAGGCCTGAAGAAGTTCTCCGTCCAAGTTCCAG 540
                      ************************************************************

consensus_3552#0      ACACTTTCGTCATGTGACGATATAAAAGTAAATGCTTGTGTCTTATGATGTTCGACAAAC 436
consensus_3552#1      ACACTTTCGTCATGTGACGATATAAAAGTAAATGC------------------------- 575
                      ***********************************                         

consensus_3552#0      TTGAAGCTCAGAGGATCTGAGCCCTTCTTGGTAAATTGTGTTAGATGCCTGCAGATAAGT 496
consensus_3552#1      ------------------------------------------------------------
                                                                                  

consensus_3552#0      CAGAACTCATAAGAACATACTCTGCAAACAGGGATAGTGACCAAATCTAGAAACTAATTT 556
consensus_3552#1      ------------------------------------------------------------
                                                                                  

consensus_3552#0      CTGAGTGAATTTAGCATGTTCTTTAGTTTGTGAAAACTACATAAAAGTGGAAATATACTA 616
consensus_3552#1      ------------------------------------------------------------