These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3557#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 433 fasta sequence [CGCCATCTTCCTCCGCCACCACCGCCCATTCTCACGTCGGACGACGAGCTTGTCACCGTGTCAAGACAAATAATTAAGGGAGGCCAATGATGAATCCCGATCTAAACAGATATCGCGAAGTGGACAGTGGGGCGGCGGACAAGAAAAGGTGCGACGGGTGAAAAAACGTGGTGACGATCGAAAATTTACCGATTTTTTATGTAGTTAAGATAAGATATAGAATGCGGTAATGAGTATCTATGATAGAAGAGAGAATTAGTATTAATTATATTTAGTGGGAATAAATTTTGTAGACATATAGAATGCCGTGTGAGAAAGCGATCGAGCTTTTGTAAATTTAAAATCCGTTCTCTATACGGGCTTGTGCCGCCGGATAATCTTGCGAGTACGTGAACAAGCTTGCCATCGCCAGCCTGAGCCCTGAGCTAGCTTG] [+] EMBL AK108049 [CGCCATCTTCCTCCGCCACCACCGCCCATTCTCACGTCGGACGACGAGCTTGTCACCGTGTCAAGACAAATAATTAAGGGAGGCCAATGATGAATCCCGATCTAAACAGATATCGCGAAGTGGACAGTGGGGCGGCGGACAAGAAAAGGTGCGACGGGTGAAAAAACGTGGTGACGATCGAAAATTTACCGATTTTTTATGTAGTTAAGATAAGATATAGAATGCGGTAATGAGTATCTATGATAGAAGAGAGAATTAGTATTAATTATATTTAGTGGGAATAAATTTTGTAGACATATAGAATGCCGTGTGAGAAAGCGATCGAGCTTTTGTAAATTTAAAATCCGTTCTCTATACGGGCTTGTGCCGCCGGATAATCTTGCGAGTACGTGAACAAGCTTGCCATCGCCAGCCTGAGCCCTGAGCTAGCTTG] consensusID : consensus_3557#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 176 fasta sequence [AGAATGCGGTAATGAGTATCTATGATAGAAGAGAGAATTAGTATTAATTATATTTAGTGGGAATAAATTTTGTAGACATATAGAATGCCGTGTGAGAAAGCGATCGAGCTTTTGTAAATTTAAAATCCGTTCTCTAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGGTATGTA] [-] EMBL CF322268 [AGAATGCGGTAATGAGTATCTATGATAGAAGAGAGAATTAGTATTAATTATATTTAGTGGGAATAAATTTTGTAGACATATAGAATGCCGTGTGAGAAAGCGATCGAGCTTTTGTAAATTTAAAATCCGTTCTCTAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGGTATGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3557#0 CGCCATCTTCCTCCGCCACCACCGCCCATTCTCACGTCGGACGACGAGCTTGTCACCGTG 60 consensus_3557#1 ------------------------------------------------------------ consensus_3557#0 TCAAGACAAATAATTAAGGGAGGCCAATGATGAATCCCGATCTAAACAGATATCGCGAAG 120 consensus_3557#1 ------------------------------------------------------------ consensus_3557#0 TGGACAGTGGGGCGGCGGACAAGAAAAGGTGCGACGGGTGAAAAAACGTGGTGACGATCG 180 consensus_3557#1 ------------------------------------------------------------ consensus_3557#0 AAAATTTACCGATTTTTTATGTAGTTAAGATAAGATATAGAATGCGGTAATGAGTATCTA 240 consensus_3557#1 --------------------------------------AGAATGCGGTAATGAGTATCTA 22 ********************** consensus_3557#0 TGATAGAAGAGAGAATTAGTATTAATTATATTTAGTGGGAATAAATTTTGTAGACATATA 300 consensus_3557#1 TGATAGAAGAGAGAATTAGTATTAATTATATTTAGTGGGAATAAATTTTGTAGACATATA 82 ************************************************************ consensus_3557#0 GAATGCCGTGTGAGAAAGCGATCGAGCTTTTGTAAATTTAAAATCCGTTCTCTATACGGG 360 consensus_3557#1 GAATGCCGTGTGAGAAAGCGATCGAGCTTTTGTAAATTTAAAATCCGTTCTCTAAAAAAA 142 ****************************************************** * consensus_3557#0 CTTGTGCCGCCGGATA--ATCTTGCGAGTACGTGAACAAGCTTGCCATCGCCAGCCTGAG 418 consensus_3557#1 AAAAAAAAAAAAAACACTGTCATGCCGGTATGTA-------------------------- 176 * * ** *** *** ** consensus_3557#0 CCCTGAGCTAGCTTG 433 consensus_3557#1 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||