cluster # 3557

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Oryza sativa
cluster # 3557 cluster # 3557 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3557#0 length = 433 sequences # 1

consensus_3557#1 length = 176 sequences # 1

consensusID : consensus_3557#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 433
fasta sequence

                              [CGCCATCTTCCTCCGCCACCACCGCCCATTCTCACGTCGGACGACGAGCTTGTCACCGTGTCAAGACAAATAATTAAGGGAGGCCAATGATGAATCCCGATCTAAACAGATATCGCGAAGTGGACAGTGGGGCGGCGGACAAGAAAAGGTGCGACGGGTGAAAAAACGTGGTGACGATCGAAAATTTACCGATTTTTTATGTAGTTAAGATAAGATATAGAATGCGGTAATGAGTATCTATGATAGAAGAGAGAATTAGTATTAATTATATTTAGTGGGAATAAATTTTGTAGACATATAGAATGCCGTGTGAGAAAGCGATCGAGCTTTTGTAAATTTAAAATCCGTTCTCTATACGGGCTTGTGCCGCCGGATAATCTTGCGAGTACGTGAACAAGCTTGCCATCGCCAGCCTGAGCCCTGAGCTAGCTTG]

[+] EMBL AK108049             [CGCCATCTTCCTCCGCCACCACCGCCCATTCTCACGTCGGACGACGAGCTTGTCACCGTGTCAAGACAAATAATTAAGGGAGGCCAATGATGAATCCCGATCTAAACAGATATCGCGAAGTGGACAGTGGGGCGGCGGACAAGAAAAGGTGCGACGGGTGAAAAAACGTGGTGACGATCGAAAATTTACCGATTTTTTATGTAGTTAAGATAAGATATAGAATGCGGTAATGAGTATCTATGATAGAAGAGAGAATTAGTATTAATTATATTTAGTGGGAATAAATTTTGTAGACATATAGAATGCCGTGTGAGAAAGCGATCGAGCTTTTGTAAATTTAAAATCCGTTCTCTATACGGGCTTGTGCCGCCGGATAATCTTGCGAGTACGTGAACAAGCTTGCCATCGCCAGCCTGAGCCCTGAGCTAGCTTG]




>consensus_3557#0
CGCCATCTTCCTCCGCCACCACCGCCCATTCTCACGTCGGACGACGAGCTTGTCACCGTG
TCAAGACAAATAATTAAGGGAGGCCAATGATGAATCCCGATCTAAACAGATATCGCGAAG
TGGACAGTGGGGCGGCGGACAAGAAAAGGTGCGACGGGTGAAAAAACGTGGTGACGATCG
AAAATTTACCGATTTTTTATGTAGTTAAGATAAGATATAGAATGCGGTAATGAGTATCTA
TGATAGAAGAGAGAATTAGTATTAATTATATTTAGTGGGAATAAATTTTGTAGACATATA
GAATGCCGTGTGAGAAAGCGATCGAGCTTTTGTAAATTTAAAATCCGTTCTCTATACGGG
CTTGTGCCGCCGGATAATCTTGCGAGTACGTGAACAAGCTTGCCATCGCCAGCCTGAGCC
CTGAGCTAGCTTG

consensusID : consensus_3557#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 176
fasta sequence

                              [AGAATGCGGTAATGAGTATCTATGATAGAAGAGAGAATTAGTATTAATTATATTTAGTGGGAATAAATTTTGTAGACATATAGAATGCCGTGTGAGAAAGCGATCGAGCTTTTGTAAATTTAAAATCCGTTCTCTAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGGTATGTA]

[-] EMBL CF322268             [AGAATGCGGTAATGAGTATCTATGATAGAAGAGAGAATTAGTATTAATTATATTTAGTGGGAATAAATTTTGTAGACATATAGAATGCCGTGTGAGAAAGCGATCGAGCTTTTGTAAATTTAAAATCCGTTCTCTAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGGTATGTA]




>consensus_3557#1
AGAATGCGGTAATGAGTATCTATGATAGAAGAGAGAATTAGTATTAATTATATTTAGTGG
GAATAAATTTTGTAGACATATAGAATGCCGTGTGAGAAAGCGATCGAGCTTTTGTAAATT
TAAAATCCGTTCTCTAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGGTATGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3557#0      CGCCATCTTCCTCCGCCACCACCGCCCATTCTCACGTCGGACGACGAGCTTGTCACCGTG 60
consensus_3557#1      ------------------------------------------------------------
                                                                                  

consensus_3557#0      TCAAGACAAATAATTAAGGGAGGCCAATGATGAATCCCGATCTAAACAGATATCGCGAAG 120
consensus_3557#1      ------------------------------------------------------------
                                                                                  

consensus_3557#0      TGGACAGTGGGGCGGCGGACAAGAAAAGGTGCGACGGGTGAAAAAACGTGGTGACGATCG 180
consensus_3557#1      ------------------------------------------------------------
                                                                                  

consensus_3557#0      AAAATTTACCGATTTTTTATGTAGTTAAGATAAGATATAGAATGCGGTAATGAGTATCTA 240
consensus_3557#1      --------------------------------------AGAATGCGGTAATGAGTATCTA 22
                                                            **********************

consensus_3557#0      TGATAGAAGAGAGAATTAGTATTAATTATATTTAGTGGGAATAAATTTTGTAGACATATA 300
consensus_3557#1      TGATAGAAGAGAGAATTAGTATTAATTATATTTAGTGGGAATAAATTTTGTAGACATATA 82
                      ************************************************************

consensus_3557#0      GAATGCCGTGTGAGAAAGCGATCGAGCTTTTGTAAATTTAAAATCCGTTCTCTATACGGG 360
consensus_3557#1      GAATGCCGTGTGAGAAAGCGATCGAGCTTTTGTAAATTTAAAATCCGTTCTCTAAAAAAA 142
                      ****************************************************** *    

consensus_3557#0      CTTGTGCCGCCGGATA--ATCTTGCGAGTACGTGAACAAGCTTGCCATCGCCAGCCTGAG 418
consensus_3557#1      AAAAAAAAAAAAAACACTGTCATGCCGGTATGTA-------------------------- 176
                                   * *   ** ***  *** **                           

consensus_3557#0      CCCTGAGCTAGCTTG 433
consensus_3557#1      ---------------