cluster # 3558

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Oryza sativa
cluster # 3558 cluster # 3558 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3558#0 length = 801 sequences # 1

consensus_3558#1 length = 720 sequences # 1

consensusID : consensus_3558#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 801
fasta sequence

                              [AGTTCTCTTCATAAAGGAATCTATGAAATTCCCCTTCTCAGAGATTCAAGCTGCAACGTCTGAATTCTCAAATGAGAATTTGCTGGGTGAGGGTGGGTTTGGGCATGTTTACAAGGGCCAACTCAAGGATGGCCAGGTCATAGCAGCTAAAGTACGCAAGGAAGCAAGCTCACAGGGCTATACTGAGTTCTTCTCTGAAGTACAAGTTCTCAGCTTTGCCCGGCACCGAAATATTGTCATGCTGCTTGGGTATTGTTGCAAAGAAAGCTACAACATTTTGGTGTATGAGTACATATGCAACAAATCCCTTGAGTGGCATTTATTTGACAAGGACGCAAACTTACTGGAATGGCACAAGAGGCATGCTATTGCCCTTGGTATAGCAAAAGGGCTGCGTTTTCTACACGAAGAATGTCGTGCTGGTCCAATTATTCATCGGGATTTGCGCCCAAGCAATGTACTTTTGACACATGACTTTGTTCCTATGCTTGGGGACTTTGGTCTTGCAAAATGGAAGGCTAGCAATGCTTCTATCCATACAAGGATTCTGGGGCAATCAGGGTTGGAATAAACTCAAATTATTTCACCGATAAAACTTTATCTTCTAATTTATGCTAACATTTTGCTCCTGTTTTCTAAGGTCTAACAGTACCAGTATTTCTTGTCATTATTGTCAGATACTTGGCTCCCGAATATGCTGAATATGGCATAGTTTCTGTCAGAACAGATGTTTATGCCTTTGGGATTGTTCTTTTCCAGCTGATATCTGGTCGCAAGGTGCTTGATGAATGTGGAGGGCAG]

[+] EMBL CB678828             [AGTTCTCTTCATAAAGGAATCTATGAAATTCCCCTTCTCAGAGATTCAAGCTGCAACGTCTGAATTCTCAAATGAGAATTTGCTGGGTGAGGGTGGGTTTGGGCATGTTTACAAGGGCCAACTCAAGGATGGCCAGGTCATAGCAGCTAAAGTACGCAAGGAAGCAAGCTCACAGGGCTATACTGAGTTCTTCTCTGAAGTACAAGTTCTCAGCTTTGCCCGGCACCGAAATATTGTCATGCTGCTTGGGTATTGTTGCAAAGAAAGCTACAACATTTTGGTGTATGAGTACATATGCAACAAATCCCTTGAGTGGCATTTATTTGACAAGGACGCAAACTTACTGGAATGGCACAAGAGGCATGCTATTGCCCTTGGTATAGCAAAAGGGCTGCGTTTTCTACACGAAGAATGTCGTGCTGGTCCAATTATTCATCGGGATTTGCGCCCAAGCAATGTACTTTTGACACATGACTTTGTTCCTATGCTTGGGGACTTTGGTCTTGCAAAATGGAAGGCTAGCAATGCTTCTATCCATACAAGGATTCTGGGGCAATCAGGGTTGGAATAAACTCAAATTATTTCACCGATAAAACTTTATCTTCTAATTTATGCTAACATTTTGCTCCTGTTTTCTAAGGTCTAACAGTACCAGTATTTCTTGTCATTATTGTCAGATACTTGGCTCCCGAATATGCTGAATATGGCATAGTTTCTGTCAGAACAGATGTTTATGCCTTTGGGATTGTTCTTTTCCAGCTGATATCTGGTCGCAAGGTGCTTGATGAATGTGGAGGGCAG]




>consensus_3558#0
AGTTCTCTTCATAAAGGAATCTATGAAATTCCCCTTCTCAGAGATTCAAGCTGCAACGTC
TGAATTCTCAAATGAGAATTTGCTGGGTGAGGGTGGGTTTGGGCATGTTTACAAGGGCCA
ACTCAAGGATGGCCAGGTCATAGCAGCTAAAGTACGCAAGGAAGCAAGCTCACAGGGCTA
TACTGAGTTCTTCTCTGAAGTACAAGTTCTCAGCTTTGCCCGGCACCGAAATATTGTCAT
GCTGCTTGGGTATTGTTGCAAAGAAAGCTACAACATTTTGGTGTATGAGTACATATGCAA
CAAATCCCTTGAGTGGCATTTATTTGACAAGGACGCAAACTTACTGGAATGGCACAAGAG
GCATGCTATTGCCCTTGGTATAGCAAAAGGGCTGCGTTTTCTACACGAAGAATGTCGTGC
TGGTCCAATTATTCATCGGGATTTGCGCCCAAGCAATGTACTTTTGACACATGACTTTGT
TCCTATGCTTGGGGACTTTGGTCTTGCAAAATGGAAGGCTAGCAATGCTTCTATCCATAC
AAGGATTCTGGGGCAATCAGGGTTGGAATAAACTCAAATTATTTCACCGATAAAACTTTA
TCTTCTAATTTATGCTAACATTTTGCTCCTGTTTTCTAAGGTCTAACAGTACCAGTATTT
CTTGTCATTATTGTCAGATACTTGGCTCCCGAATATGCTGAATATGGCATAGTTTCTGTC
AGAACAGATGTTTATGCCTTTGGGATTGTTCTTTTCCAGCTGATATCTGGTCGCAAGGTG
CTTGATGAATGTGGAGGGCAG

consensusID : consensus_3558#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 720
fasta sequence

                              [TAGATACTGACACTCATAGTGTGTTGACCAACCCTTCACCTGTAAGTTATTTTGCCTCTCTAAGCTATCACGAGATGCATGAAACATCCAGTGTGGTCGGGAGCAGCATGTCATATTTGACACCATCAATGAGCGCCATGTCTCTCACAACGATTGACGGAACTGATTCCTTGTCCAACGGTAAAGGTGTTGAAGGAAACATGTTCTACCACTATGATTCATCAGAGCGACCAGTTCTGTGTGCTGGTTGTGGTCTAAAGTCAGTTCTTTACATAAAGGAATCTATGAAATTCCCCTTCTCAGAGATTCAAGCTGCAACGTCTGAATTCTCAAATGAGAATTTGCTGGGTGAGGGTGGGTTTGGGCATGTTTACAAGGGCCAACTCAAGGATGGCCAGGTCATAGCAGCTAAAGTACGCAAGGAAGCAAGCTCACAGGGCTATACTGAGTTCTTCTCTGAAGTACAAGTTCTCAGCTTTGCCCGGCACCGAAATATTGTCATGCTGCTTGGGTATTGTTGCAAAGAAAGCTACAACATTTTGGTGTATGAGTACATATGCAACAAATCCCTTGAGTGGCATTTATTTGGTAAGAGCTTAGTTGATGTGCAGAAAGTAATTTATATTGTGAAGATGAAGGGTGGCTAATTTACTTTGCTCGTCACTTGATGAAATAGACAAGGACGCAAACTTACTGGAATGGCACAAGAGGCATGCTATT]

[+] EMBL CB620525             [TAGATACTGACACTCATAGTGTGTTGACCAACCCTTCACCTGTAAGTTATTTTGCCTCTCTAAGCTATCACGAGATGCATGAAACATCCAGTGTGGTCGGGAGCAGCATGTCATATTTGACACCATCAATGAGCGCCATGTCTCTCACAACGATTGACGGAACTGATTCCTTGTCCAACGGTAAAGGTGTTGAAGGAAACATGTTCTACCACTATGATTCATCAGAGCGACCAGTTCTGTGTGCTGGTTGTGGTCTAAAGTCAGTTCTTTACATAAAGGAATCTATGAAATTCCCCTTCTCAGAGATTCAAGCTGCAACGTCTGAATTCTCAAATGAGAATTTGCTGGGTGAGGGTGGGTTTGGGCATGTTTACAAGGGCCAACTCAAGGATGGCCAGGTCATAGCAGCTAAAGTACGCAAGGAAGCAAGCTCACAGGGCTATACTGAGTTCTTCTCTGAAGTACAAGTTCTCAGCTTTGCCCGGCACCGAAATATTGTCATGCTGCTTGGGTATTGTTGCAAAGAAAGCTACAACATTTTGGTGTATGAGTACATATGCAACAAATCCCTTGAGTGGCATTTATTTGGTAAGAGCTTAGTTGATGTGCAGAAAGTAATTTATATTGTGAAGATGAAGGGTGGCTAATTTACTTTGCTCGTCACTTGATGAAATAGACAAGGACGCAAACTTACTGGAATGGCACAAGAGGCATGCTATT]




>consensus_3558#1
TAGATACTGACACTCATAGTGTGTTGACCAACCCTTCACCTGTAAGTTATTTTGCCTCTC
TAAGCTATCACGAGATGCATGAAACATCCAGTGTGGTCGGGAGCAGCATGTCATATTTGA
CACCATCAATGAGCGCCATGTCTCTCACAACGATTGACGGAACTGATTCCTTGTCCAACG
GTAAAGGTGTTGAAGGAAACATGTTCTACCACTATGATTCATCAGAGCGACCAGTTCTGT
GTGCTGGTTGTGGTCTAAAGTCAGTTCTTTACATAAAGGAATCTATGAAATTCCCCTTCT
CAGAGATTCAAGCTGCAACGTCTGAATTCTCAAATGAGAATTTGCTGGGTGAGGGTGGGT
TTGGGCATGTTTACAAGGGCCAACTCAAGGATGGCCAGGTCATAGCAGCTAAAGTACGCA
AGGAAGCAAGCTCACAGGGCTATACTGAGTTCTTCTCTGAAGTACAAGTTCTCAGCTTTG
CCCGGCACCGAAATATTGTCATGCTGCTTGGGTATTGTTGCAAAGAAAGCTACAACATTT
TGGTGTATGAGTACATATGCAACAAATCCCTTGAGTGGCATTTATTTGGTAAGAGCTTAG
TTGATGTGCAGAAAGTAATTTATATTGTGAAGATGAAGGGTGGCTAATTTACTTTGCTCG
TCACTTGATGAAATAGACAAGGACGCAAACTTACTGGAATGGCACAAGAGGCATGCTATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3558#0      ------------------------------------------------------------
consensus_3558#1      TAGATACTGACACTCATAGTGTGTTGACCAACCCTTCACCTGTAAGTTATTTTGCCTCTC 60
                                                                                  

consensus_3558#0      ------------------------------------------------------------
consensus_3558#1      TAAGCTATCACGAGATGCATGAAACATCCAGTGTGGTCGGGAGCAGCATGTCATATTTGA 120
                                                                                  

consensus_3558#0      ------------------------------------------------------------
consensus_3558#1      CACCATCAATGAGCGCCATGTCTCTCACAACGATTGACGGAACTGATTCCTTGTCCAACG 180
                                                                                  

consensus_3558#0      ------------------------------------------------------------
consensus_3558#1      GTAAAGGTGTTGAAGGAAACATGTTCTACCACTATGATTCATCAGAGCGACCAGTTCTGT 240
                                                                                  

consensus_3558#0      ----------------------AGTTCTCTTCATAAAGGAATCTATGAAATTCCCCTTCT 38
consensus_3558#1      GTGCTGGTTGTGGTCTAAAGTCAGTTCTTTACATAAAGGAATCTATGAAATTCCCCTTCT 300
                                            ****** * *****************************

consensus_3558#0      CAGAGATTCAAGCTGCAACGTCTGAATTCTCAAATGAGAATTTGCTGGGTGAGGGTGGGT 98
consensus_3558#1      CAGAGATTCAAGCTGCAACGTCTGAATTCTCAAATGAGAATTTGCTGGGTGAGGGTGGGT 360
                      ************************************************************

consensus_3558#0      TTGGGCATGTTTACAAGGGCCAACTCAAGGATGGCCAGGTCATAGCAGCTAAAGTACGCA 158
consensus_3558#1      TTGGGCATGTTTACAAGGGCCAACTCAAGGATGGCCAGGTCATAGCAGCTAAAGTACGCA 420
                      ************************************************************

consensus_3558#0      AGGAAGCAAGCTCACAGGGCTATACTGAGTTCTTCTCTGAAGTACAAGTTCTCAGCTTTG 218
consensus_3558#1      AGGAAGCAAGCTCACAGGGCTATACTGAGTTCTTCTCTGAAGTACAAGTTCTCAGCTTTG 480
                      ************************************************************

consensus_3558#0      CCCGGCACCGAAATATTGTCATGCTGCTTGGGTATTGTTGCAAAGAAAGCTACAACATTT 278
consensus_3558#1      CCCGGCACCGAAATATTGTCATGCTGCTTGGGTATTGTTGCAAAGAAAGCTACAACATTT 540
                      ************************************************************

consensus_3558#0      TGGTGTATGAGTACATATGCAACAAATCCCTTGAGTGGCATTTATTTGACAAGGACGCAA 338
consensus_3558#1      TGGTGTATGAGTACATATGCAACAAATCCCTTGAGTGGCATTTATTTGGTAAGAGCTTAG 600
                      ************************************************  ***  *  * 

consensus_3558#0      ACTTACTGGAATGGCACAAGAGGCATGCTATTGCCCTTGGTATAGCAAAAGGGCTGCGTT 398
consensus_3558#1      -TTGATGTGCAGAAAGTAATTTATATTGTGAAGATGAAGG-GTGGCTAATTTACTTTGCT 658
                        * *   * *      **     **  *   *     **  * ** **    **  * *

consensus_3558#0      TTCTACACGAAGAATGTCGTGCTGGTCCAATTATTCATCGGGATTTGCGCCCAAGCAATG 458
consensus_3558#1      CGTCACTTGATGAAATAGACAAGGACGCAA--ACTTACTGGAATG---GCACAAGAGGCA 713
                          **  ** ***         *   ***  * * *  ** **    ** ****     

consensus_3558#0      TACTTTTGACACATGACTTTGTTCCTATGCTTGGGGACTTTGGTCTTGCAAAATGGAAGG 518
consensus_3558#1      TGCTATT----------------------------------------------------- 720
                      * ** **                                                     

consensus_3558#0      CTAGCAATGCTTCTATCCATACAAGGATTCTGGGGCAATCAGGGTTGGAATAAACTCAAA 578
consensus_3558#1      ------------------------------------------------------------
                                                                                  

consensus_3558#0      TTATTTCACCGATAAAACTTTATCTTCTAATTTATGCTAACATTTTGCTCCTGTTTTCTA 638
consensus_3558#1      ------------------------------------------------------------
                                                                                  

consensus_3558#0      AGGTCTAACAGTACCAGTATTTCTTGTCATTATTGTCAGATACTTGGCTCCCGAATATGC 698
consensus_3558#1      ------------------------------------------------------------
                                                                                  

consensus_3558#0      TGAATATGGCATAGTTTCTGTCAGAACAGATGTTTATGCCTTTGGGATTGTTCTTTTCCA 758
consensus_3558#1      ------------------------------------------------------------
                                                                                  

consensus_3558#0      GCTGATATCTGGTCGCAAGGTGCTTGATGAATGTGGAGGGCAG 801
consensus_3558#1      -------------------------------------------