These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3558#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 801 fasta sequence [AGTTCTCTTCATAAAGGAATCTATGAAATTCCCCTTCTCAGAGATTCAAGCTGCAACGTCTGAATTCTCAAATGAGAATTTGCTGGGTGAGGGTGGGTTTGGGCATGTTTACAAGGGCCAACTCAAGGATGGCCAGGTCATAGCAGCTAAAGTACGCAAGGAAGCAAGCTCACAGGGCTATACTGAGTTCTTCTCTGAAGTACAAGTTCTCAGCTTTGCCCGGCACCGAAATATTGTCATGCTGCTTGGGTATTGTTGCAAAGAAAGCTACAACATTTTGGTGTATGAGTACATATGCAACAAATCCCTTGAGTGGCATTTATTTGACAAGGACGCAAACTTACTGGAATGGCACAAGAGGCATGCTATTGCCCTTGGTATAGCAAAAGGGCTGCGTTTTCTACACGAAGAATGTCGTGCTGGTCCAATTATTCATCGGGATTTGCGCCCAAGCAATGTACTTTTGACACATGACTTTGTTCCTATGCTTGGGGACTTTGGTCTTGCAAAATGGAAGGCTAGCAATGCTTCTATCCATACAAGGATTCTGGGGCAATCAGGGTTGGAATAAACTCAAATTATTTCACCGATAAAACTTTATCTTCTAATTTATGCTAACATTTTGCTCCTGTTTTCTAAGGTCTAACAGTACCAGTATTTCTTGTCATTATTGTCAGATACTTGGCTCCCGAATATGCTGAATATGGCATAGTTTCTGTCAGAACAGATGTTTATGCCTTTGGGATTGTTCTTTTCCAGCTGATATCTGGTCGCAAGGTGCTTGATGAATGTGGAGGGCAG] [+] EMBL CB678828 [AGTTCTCTTCATAAAGGAATCTATGAAATTCCCCTTCTCAGAGATTCAAGCTGCAACGTCTGAATTCTCAAATGAGAATTTGCTGGGTGAGGGTGGGTTTGGGCATGTTTACAAGGGCCAACTCAAGGATGGCCAGGTCATAGCAGCTAAAGTACGCAAGGAAGCAAGCTCACAGGGCTATACTGAGTTCTTCTCTGAAGTACAAGTTCTCAGCTTTGCCCGGCACCGAAATATTGTCATGCTGCTTGGGTATTGTTGCAAAGAAAGCTACAACATTTTGGTGTATGAGTACATATGCAACAAATCCCTTGAGTGGCATTTATTTGACAAGGACGCAAACTTACTGGAATGGCACAAGAGGCATGCTATTGCCCTTGGTATAGCAAAAGGGCTGCGTTTTCTACACGAAGAATGTCGTGCTGGTCCAATTATTCATCGGGATTTGCGCCCAAGCAATGTACTTTTGACACATGACTTTGTTCCTATGCTTGGGGACTTTGGTCTTGCAAAATGGAAGGCTAGCAATGCTTCTATCCATACAAGGATTCTGGGGCAATCAGGGTTGGAATAAACTCAAATTATTTCACCGATAAAACTTTATCTTCTAATTTATGCTAACATTTTGCTCCTGTTTTCTAAGGTCTAACAGTACCAGTATTTCTTGTCATTATTGTCAGATACTTGGCTCCCGAATATGCTGAATATGGCATAGTTTCTGTCAGAACAGATGTTTATGCCTTTGGGATTGTTCTTTTCCAGCTGATATCTGGTCGCAAGGTGCTTGATGAATGTGGAGGGCAG] consensusID : consensus_3558#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 720 fasta sequence [TAGATACTGACACTCATAGTGTGTTGACCAACCCTTCACCTGTAAGTTATTTTGCCTCTCTAAGCTATCACGAGATGCATGAAACATCCAGTGTGGTCGGGAGCAGCATGTCATATTTGACACCATCAATGAGCGCCATGTCTCTCACAACGATTGACGGAACTGATTCCTTGTCCAACGGTAAAGGTGTTGAAGGAAACATGTTCTACCACTATGATTCATCAGAGCGACCAGTTCTGTGTGCTGGTTGTGGTCTAAAGTCAGTTCTTTACATAAAGGAATCTATGAAATTCCCCTTCTCAGAGATTCAAGCTGCAACGTCTGAATTCTCAAATGAGAATTTGCTGGGTGAGGGTGGGTTTGGGCATGTTTACAAGGGCCAACTCAAGGATGGCCAGGTCATAGCAGCTAAAGTACGCAAGGAAGCAAGCTCACAGGGCTATACTGAGTTCTTCTCTGAAGTACAAGTTCTCAGCTTTGCCCGGCACCGAAATATTGTCATGCTGCTTGGGTATTGTTGCAAAGAAAGCTACAACATTTTGGTGTATGAGTACATATGCAACAAATCCCTTGAGTGGCATTTATTTGGTAAGAGCTTAGTTGATGTGCAGAAAGTAATTTATATTGTGAAGATGAAGGGTGGCTAATTTACTTTGCTCGTCACTTGATGAAATAGACAAGGACGCAAACTTACTGGAATGGCACAAGAGGCATGCTATT] [+] EMBL CB620525 [TAGATACTGACACTCATAGTGTGTTGACCAACCCTTCACCTGTAAGTTATTTTGCCTCTCTAAGCTATCACGAGATGCATGAAACATCCAGTGTGGTCGGGAGCAGCATGTCATATTTGACACCATCAATGAGCGCCATGTCTCTCACAACGATTGACGGAACTGATTCCTTGTCCAACGGTAAAGGTGTTGAAGGAAACATGTTCTACCACTATGATTCATCAGAGCGACCAGTTCTGTGTGCTGGTTGTGGTCTAAAGTCAGTTCTTTACATAAAGGAATCTATGAAATTCCCCTTCTCAGAGATTCAAGCTGCAACGTCTGAATTCTCAAATGAGAATTTGCTGGGTGAGGGTGGGTTTGGGCATGTTTACAAGGGCCAACTCAAGGATGGCCAGGTCATAGCAGCTAAAGTACGCAAGGAAGCAAGCTCACAGGGCTATACTGAGTTCTTCTCTGAAGTACAAGTTCTCAGCTTTGCCCGGCACCGAAATATTGTCATGCTGCTTGGGTATTGTTGCAAAGAAAGCTACAACATTTTGGTGTATGAGTACATATGCAACAAATCCCTTGAGTGGCATTTATTTGGTAAGAGCTTAGTTGATGTGCAGAAAGTAATTTATATTGTGAAGATGAAGGGTGGCTAATTTACTTTGCTCGTCACTTGATGAAATAGACAAGGACGCAAACTTACTGGAATGGCACAAGAGGCATGCTATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3558#0 ------------------------------------------------------------ consensus_3558#1 TAGATACTGACACTCATAGTGTGTTGACCAACCCTTCACCTGTAAGTTATTTTGCCTCTC 60 consensus_3558#0 ------------------------------------------------------------ consensus_3558#1 TAAGCTATCACGAGATGCATGAAACATCCAGTGTGGTCGGGAGCAGCATGTCATATTTGA 120 consensus_3558#0 ------------------------------------------------------------ consensus_3558#1 CACCATCAATGAGCGCCATGTCTCTCACAACGATTGACGGAACTGATTCCTTGTCCAACG 180 consensus_3558#0 ------------------------------------------------------------ consensus_3558#1 GTAAAGGTGTTGAAGGAAACATGTTCTACCACTATGATTCATCAGAGCGACCAGTTCTGT 240 consensus_3558#0 ----------------------AGTTCTCTTCATAAAGGAATCTATGAAATTCCCCTTCT 38 consensus_3558#1 GTGCTGGTTGTGGTCTAAAGTCAGTTCTTTACATAAAGGAATCTATGAAATTCCCCTTCT 300 ****** * ***************************** consensus_3558#0 CAGAGATTCAAGCTGCAACGTCTGAATTCTCAAATGAGAATTTGCTGGGTGAGGGTGGGT 98 consensus_3558#1 CAGAGATTCAAGCTGCAACGTCTGAATTCTCAAATGAGAATTTGCTGGGTGAGGGTGGGT 360 ************************************************************ consensus_3558#0 TTGGGCATGTTTACAAGGGCCAACTCAAGGATGGCCAGGTCATAGCAGCTAAAGTACGCA 158 consensus_3558#1 TTGGGCATGTTTACAAGGGCCAACTCAAGGATGGCCAGGTCATAGCAGCTAAAGTACGCA 420 ************************************************************ consensus_3558#0 AGGAAGCAAGCTCACAGGGCTATACTGAGTTCTTCTCTGAAGTACAAGTTCTCAGCTTTG 218 consensus_3558#1 AGGAAGCAAGCTCACAGGGCTATACTGAGTTCTTCTCTGAAGTACAAGTTCTCAGCTTTG 480 ************************************************************ consensus_3558#0 CCCGGCACCGAAATATTGTCATGCTGCTTGGGTATTGTTGCAAAGAAAGCTACAACATTT 278 consensus_3558#1 CCCGGCACCGAAATATTGTCATGCTGCTTGGGTATTGTTGCAAAGAAAGCTACAACATTT 540 ************************************************************ consensus_3558#0 TGGTGTATGAGTACATATGCAACAAATCCCTTGAGTGGCATTTATTTGACAAGGACGCAA 338 consensus_3558#1 TGGTGTATGAGTACATATGCAACAAATCCCTTGAGTGGCATTTATTTGGTAAGAGCTTAG 600 ************************************************ *** * * consensus_3558#0 ACTTACTGGAATGGCACAAGAGGCATGCTATTGCCCTTGGTATAGCAAAAGGGCTGCGTT 398 consensus_3558#1 -TTGATGTGCAGAAAGTAATTTATATTGTGAAGATGAAGG-GTGGCTAATTTACTTTGCT 658 * * * * ** ** * * ** * ** ** ** * * consensus_3558#0 TTCTACACGAAGAATGTCGTGCTGGTCCAATTATTCATCGGGATTTGCGCCCAAGCAATG 458 consensus_3558#1 CGTCACTTGATGAAATAGACAAGGACGCAA--ACTTACTGGAATG---GCACAAGAGGCA 713 ** ** *** * *** * * * ** ** ** **** consensus_3558#0 TACTTTTGACACATGACTTTGTTCCTATGCTTGGGGACTTTGGTCTTGCAAAATGGAAGG 518 consensus_3558#1 TGCTATT----------------------------------------------------- 720 * ** ** consensus_3558#0 CTAGCAATGCTTCTATCCATACAAGGATTCTGGGGCAATCAGGGTTGGAATAAACTCAAA 578 consensus_3558#1 ------------------------------------------------------------ consensus_3558#0 TTATTTCACCGATAAAACTTTATCTTCTAATTTATGCTAACATTTTGCTCCTGTTTTCTA 638 consensus_3558#1 ------------------------------------------------------------ consensus_3558#0 AGGTCTAACAGTACCAGTATTTCTTGTCATTATTGTCAGATACTTGGCTCCCGAATATGC 698 consensus_3558#1 ------------------------------------------------------------ consensus_3558#0 TGAATATGGCATAGTTTCTGTCAGAACAGATGTTTATGCCTTTGGGATTGTTCTTTTCCA 758 consensus_3558#1 ------------------------------------------------------------ consensus_3558#0 GCTGATATCTGGTCGCAAGGTGCTTGATGAATGTGGAGGGCAG 801 consensus_3558#1 ------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||