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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_356#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1632 fasta sequence
[GCCGGCACCGAAGCCAACAGGCGGAGCAAAAATGGCGATCGCGATCTCTCAGGAGGCGTTCGACGCCATGGTGCGGGAGAACATGGAGGACCTCGGCATGGACGCCGACGAGGCCCTCGCCGACGCCGTCGACGCCCTCACCCTCCAAGGTGCCGACCTCTCCGGGATCATCAAGCGCGTGCCTGGAGAGGCCGCCGCGGCGGAGGTGAGCCCGGTGATGCGGGTGCTGGACGAGGTGAAGGCCTCTTCTGCCAGTGACAGTGACAGTGGCGGCAGGTCCGAGGAGGATGCTGAGAGGTTGGCCTCTTTGCTCGACGAGTTGCGCGAGCTGTGCTCCGGCGATGGGTTGGAGAATGCGGCGGTCGCTGCTCGGAATGGCGGCGTGGAGGCGCTCGTCGCCCTGTGCGCGTCGGCTGGGGTTAAGCAGGAGAGACTACTTGCCTCGGGCTTGAAGGCGCTAAGCTCCTTGCTCCGCGATGTTGGAAGCACTGAAAAGTTCAGGCAAAGCGAAGGGCCCCAAGTTGTCATGGGTATTTTGAAAGGAGGTTCAGAAAGTTCAGATATACTGGAAGGTGGCTTTAGGGTTGTGGCTTCAGCATCTGCAGGCAATGAAGTTGTTAAAGAGTGCTTTATGGTCCTGAAGGTTGATGAACTCATTTTTCAAGTTATGGGGGAGAAATCAAATAGCAATGTGCAAAGCTTGTATGATGCCATACGTGTTCTATTGACACCTGATGACAATCGTGTGGTGGCTTCTCAAGTATATGGATATTCTCGGAGGTTCGCAGAAACTGGGATTGCAGCAGTTCTTGTCAATGCACTACGTGAGAAAGTTGCCCCTTCCAGCTTACCATCAGCTTGTGCGGCTCTGAAGGCAATTGCTGTCAATGATGAAATATGCAGATCCATATCTGAAAATGGTGGGATTGATGTGCTTCTTCGCTGTATTGATGAGGCTAGTGAACAAAAGAACAAAGTTATAGCAAAATCTTGCTGCTCTCTGCTGTCCAAGCTGGCTGGAAGTGATGCAAACAAGACTACTATCATTGAACGAGGTGGTTTTGATAAGTTCTTGAAGTTGACATCGAGATTTTCTGAAGACCCACCAATAATACAAGAGGTAATGTCTATGGTGACTATCCTTACACTGCGGTCACCAGAAAATGCAGCTCGTGCAATGGGAGCAGGGTATGGCACTTTGGCTATACAGGCAATGCAAAAGTTCCCTTCTTCTGCTCAAACTCAGAAGCAAGCCTGCCTTATGATCCGTAATCTTGTCGTCAGAAACCCTGAAAACCGGACGATCTTGCTTAATGATGGTGTGGAGAAGCTTATTAGGAAAACCAAGATGATGCACGGGAGCTGCAAAGATGCTGCCACATCTGCCTTGAGGGATCTGGGCGTGGACAACTACAATGCATAGACAGGGAAATGAATTTACTGTGCGTAAATTTTGGCAATCTGAGGATGTTTTGGGGGAATTAATGGTGTGTTTGGGTTGATAGGATTTTGGCTATGCTTGTGCGTGGTCTCAATTTTGTGGAATTAGTGGTGTGTTGGGTTGCTGCCCCTGCAAACTGCTTCAGCTATGAATTTGTGGAACAATAGTTCAGTAACACGAGGCGTTGAAAA]
[+] EMBL AK073828 [GCCGGCACCGAAGCCAACAGGCGGAGCAAAAATGGCGATCGCGATCTCTCAGGAGGCGTTCGACGCCATGGTGCGGGAGAACATGGAGGACCTCGGCATGGACGCCGACGAGGCCCTCGCCGACGCCGTCGACGCCCTCACCCTCCAAGGTGCCGACCTCTCCGGGATCATCAAGCGCGTGCCTGGAGAGGCCGCCGCGGCGGAGGTGAGCCCGGTGATGCGGGTGCTGGACGAGGTGAAGGCCTCTTCTGCCAGTGACAGTGACAGTGGCGGCAGGTCCGAGGAGGATGCTGAGAGGTTGGCCTCTTTGCTCGACGAGTTGCGCGAGCTGTGCTCCGGCGATGGGTTGGAGAATGCGGCGGTCGCTGCTCGGAATGGCGGCGTGGAGGCGCTCGTCGCCCTGTGCGCGTCGGCTGGGGTTAAGCAGGAGAGACTACTTGCCTCGGGCTTGAAGGCGCTAAGCTCCTTGCTCCGCGATGTTGGAAGCACTGAAAAGTTCAGGCAAAGCGAAGGGCCCCAAGTTGTCATGGGTATTTTGAAAGGAGGTTCAGAAAGTTCAGATATACTGGAAGGTGGCTTTAGGGTTGTGGCTTCAGCATCTGCAGGCAATGAAGTTGTTAAAGAGTGCTTTATGGTCCTGAAGGTTGATGAACTCATTTTTCAAGTTATGGGGGAGAAATCAAATAGCAATGTGCAAAGCTTGTATGATGCCATACGTGTTCTATTGACACCTGATGACAATCGTGTGGTGGCTTCTCAAGTATATGGATATTCTCGGAGGTTCGCAGAAACTGGGATTGCAGCAGTTCTTGTCAATGCACTACGTGAGAAAGTTGCCCCTTCCAGCTTACCATCAGCTTGTGCGGCTCTGAAGGCAATTGCTGTCAATGATGAAATATGCAGATCCATATCTGAAAATGGTGGGATTGATGTGCTTCTTCGCTGTATTGATGAGGCTAGTGAACAAAAGAACAAAGTTATAGCAAAATCTTGCTGCTCTCTGCTGTCCAAGCTGGCTGGAAGTGATGCAAACAAGACTACTATCATTGAACGAGGTGGTTTTGATAAGTTCTTGAAGTTGACATCGAGATTTTCTGAAGACCCACCAATAATACAAGAGGTAATGTCTATGGTGACTATCCTTACACTGCGGTCACCAGAAAATGCAGCTCGTGCAATGGGAGCAGGGTATGGCACTTTGGCTATACAGGCAATGCAAAAGTTCCCTTCTTCTGCTCAAACTCAGAAGCAAGCCTGCCTTATGATCCGTAATCTTGTCGTCAGAAACCCTGAAAACCGGACGATCTTGCTTAATGATGGTGTGGAGAAGCTTATTAGGAAAACCAAGATGATGCACGGGAGCTGCAAAGATGCTGCCACATCTGCCTTGAGGGATCTGGGCGTGGACAACTACAATGCATAGACAGGGAAATGAATTTACTGTGCGTAAATTTTGGCAATCTGAGGATGTTTTGGGGGAATTAATGGTGTGTTTGGGTTGATAGGATTTTGGCTATGCTTGTGCGTGGTCTCAATTTTGTGGAATTAGTGGTGTGTTGGGTTGCTGCCCCTGCAAACTGCTTCAGCTATGAATTTGTGGAACAATAGTTCAGTAACACGAGGCGTTGAAAA]
consensusID : consensus_356#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 232 fasta sequence
[GCCGCTGCAATGGGAGCAGGGTATGGCACTTTGGCTATACAGGCAATGCAAAAGTTCCCTTCTTCTGCTCAAACTCAGAAGCAAGCCTGCCTTATGATCCGTAATCTTGTCGTCAGAAACCCTGAAAACCGGTATGCTGTACAATTCACAAGCACTACTGTCTGCTGGCATGACCTATTCAGAATTAAGGCATTTACAGTTCGATAGTAACATGCTTCTANTATCAGAATGT]
[+] EMBL AU225273 [GCCGCTGCAATGGGAGCAGGGTATGGCACTTTGGCTATACAGGCAATGCAAAAGTTCCCTTCTTCTGCTCAAACTCAGAAGCAAGCCTGCCTTATGATCCGTAATCTTGTCGTCAGAAACCCTGAAAACCGGTATGCTGTACAATTCACAAGCACTACTGTCTGCTGGCATGACCTATTCAGAATTAAGGCATTTACAGTTCGATAGTAACATGCTTCTANTATCAGAATGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_356#0 GCCGGCACCGAAGCCAACAGGCGGAGCAAAAATGGCGATCGCGATCTCTCAGGAGGCGTT 60
consensus_356#1 ------------------------------------------------------------
consensus_356#0 CGACGCCATGGTGCGGGAGAACATGGAGGACCTCGGCATGGACGCCGACGAGGCCCTCGC 120
consensus_356#1 ------------------------------------------------------------
consensus_356#0 CGACGCCGTCGACGCCCTCACCCTCCAAGGTGCCGACCTCTCCGGGATCATCAAGCGCGT 180
consensus_356#1 ------------------------------------------------------------
consensus_356#0 GCCTGGAGAGGCCGCCGCGGCGGAGGTGAGCCCGGTGATGCGGGTGCTGGACGAGGTGAA 240
consensus_356#1 ------------------------------------------------------------
consensus_356#0 GGCCTCTTCTGCCAGTGACAGTGACAGTGGCGGCAGGTCCGAGGAGGATGCTGAGAGGTT 300
consensus_356#1 ------------------------------------------------------------
consensus_356#0 GGCCTCTTTGCTCGACGAGTTGCGCGAGCTGTGCTCCGGCGATGGGTTGGAGAATGCGGC 360
consensus_356#1 ------------------------------------------------------------
consensus_356#0 GGTCGCTGCTCGGAATGGCGGCGTGGAGGCGCTCGTCGCCCTGTGCGCGTCGGCTGGGGT 420
consensus_356#1 ------------------------------------------------------------
consensus_356#0 TAAGCAGGAGAGACTACTTGCCTCGGGCTTGAAGGCGCTAAGCTCCTTGCTCCGCGATGT 480
consensus_356#1 ------------------------------------------------------------
consensus_356#0 TGGAAGCACTGAAAAGTTCAGGCAAAGCGAAGGGCCCCAAGTTGTCATGGGTATTTTGAA 540
consensus_356#1 ------------------------------------------------------------
consensus_356#0 AGGAGGTTCAGAAAGTTCAGATATACTGGAAGGTGGCTTTAGGGTTGTGGCTTCAGCATC 600
consensus_356#1 ------------------------------------------------------------
consensus_356#0 TGCAGGCAATGAAGTTGTTAAAGAGTGCTTTATGGTCCTGAAGGTTGATGAACTCATTTT 660
consensus_356#1 ------------------------------------------------------------
consensus_356#0 TCAAGTTATGGGGGAGAAATCAAATAGCAATGTGCAAAGCTTGTATGATGCCATACGTGT 720
consensus_356#1 ------------------------------------------------------------
consensus_356#0 TCTATTGACACCTGATGACAATCGTGTGGTGGCTTCTCAAGTATATGGATATTCTCGGAG 780
consensus_356#1 ------------------------------------------------------------
consensus_356#0 GTTCGCAGAAACTGGGATTGCAGCAGTTCTTGTCAATGCACTACGTGAGAAAGTTGCCCC 840
consensus_356#1 ------------------------------------------------------------
consensus_356#0 TTCCAGCTTACCATCAGCTTGTGCGGCTCTGAAGGCAATTGCTGTCAATGATGAAATATG 900
consensus_356#1 ------------------------------------------------------------
consensus_356#0 CAGATCCATATCTGAAAATGGTGGGATTGATGTGCTTCTTCGCTGTATTGATGAGGCTAG 960
consensus_356#1 ------------------------------------------------------------
consensus_356#0 TGAACAAAAGAACAAAGTTATAGCAAAATCTTGCTGCTCTCTGCTGTCCAAGCTGGCTGG 1020
consensus_356#1 ------------------------------------------------------------
consensus_356#0 AAGTGATGCAAACAAGACTACTATCATTGAACGAGGTGGTTTTGATAAGTTCTTGAAGTT 1080
consensus_356#1 ------------------------------------------------------------
consensus_356#0 GACATCGAGATTTTCTGAAGACCCACCAATAATACAAGAGGTAATGTCTATGGTGACTAT 1140
consensus_356#1 ------------------------------------------------------------
consensus_356#0 CCTTACACTGCGGTCACCAGAAAATGCAGCTCGTGCAATGGGAGCAGGGTATGGCACTTT 1200
consensus_356#1 ----------------------------GCCGCTGCAATGGGAGCAGGGTATGGCACTTT 32
** ***************************
consensus_356#0 GGCTATACAGGCAATGCAAAAGTTCCCTTCTTCTGCTCAAACTCAGAAGCAAGCCTGCCT 1260
consensus_356#1 GGCTATACAGGCAATGCAAAAGTTCCCTTCTTCTGCTCAAACTCAGAAGCAAGCCTGCCT 92
************************************************************
consensus_356#0 TATGATCCGTAATCTTGTCGTCAGAAACCCTGAAAACCGGACGATCTTGCTTAATGATGG 1320
consensus_356#1 TATGATCCGTAATCTTGTCGTCAGAAACCCTGAAAACCGGT--ATGCTGTACAATTCACA 150
**************************************** ** ** ***
consensus_356#0 TGTGGAGAAGCTTATTAGGAAAACCAAGAT-GATGCACGGGAGCTGCAAAGATGCTGCCA 1379
consensus_356#1 AGCACTACTGTCTGCTGGCATGACCTATTCAGAATTAAGGCATTTACAGTTCGATAGTAA 210
* * * * * * *** * ** * ** * * ** * *
consensus_356#0 CATCTGCCTTGAGGGATCTGGGCGTGGACAACTACAATGCATAGACAGGGAAATGAATTT 1439
consensus_356#1 CATG---CTTCTANTATCAGAATGT----------------------------------- 232
*** *** *** * **
consensus_356#0 ACTGTGCGTAAATTTTGGCAATCTGAGGATGTTTTGGGGGAATTAATGGTGTGTTTGGGT 1499
consensus_356#1 ------------------------------------------------------------
consensus_356#0 TGATAGGATTTTGGCTATGCTTGTGCGTGGTCTCAATTTTGTGGAATTAGTGGTGTGTTG 1559
consensus_356#1 ------------------------------------------------------------
consensus_356#0 GGTTGCTGCCCCTGCAAACTGCTTCAGCTATGAATTTGTGGAACAATAGTTCAGTAACAC 1619
consensus_356#1 ------------------------------------------------------------
consensus_356#0 GAGGCGTTGAAAA 1632
consensus_356#1 -------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||