cluster # 3579

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3579 cluster # 3579 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3579#0 length = 180 sequences # 1

consensus_3579#1 length = 84 sequences # 1

consensusID : consensus_3579#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 180
fasta sequence

                              [GAACACCCATGGGCATGTTCCGTCTATGCAGCATGTGGCCTGGCGTGGGCGTAGCTGACTGGGCGTGGCAAGGCCATGGACCAGGCAAGGGCTCCCCCTATATATGTTTGAACTGAAATCCTCACTTTGCCACCAAATTGGTCCTTGCCTGTAGACAAAATTTCTAGTTTGATGACTTAG]

[+] EMBL D42339               [GAACACCCATGGGCATGTTCCGTCTATGCAGCATGTGGCCTGGCGTGGGCGTAGCTGACTGGGCGTGGCAAGGCCATGGACCAGGCAAGGGCTCCCCCTATATATGTTTGAACTGAAATCCTCACTTTGCCACCAAATTGGTCCTTGCCTGTAGACAAAATTTCTAGTTTGATGACTTAG]




>consensus_3579#0
GAACACCCATGGGCATGTTCCGTCTATGCAGCATGTGGCCTGGCGTGGGCGTAGCTGACT
GGGCGTGGCAAGGCCATGGACCAGGCAAGGGCTCCCCCTATATATGTTTGAACTGAAATC
CTCACTTTGCCACCAAATTGGTCCTTGCCTGTAGACAAAATTTCTAGTTTGATGACTTAG

consensusID : consensus_3579#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 84
fasta sequence

                              [CATGTGGTTGGCTGGGGTGGCTGGCTGGGGTGGCAAGGCCAGGGACCAGGCAAGGGTCCCCCTATATATGTTTGAACTGAAAAT]

[+] EMBL D42254               [CATGTGGTTGGCTGGGGTGGCTGGCTGGGGTGGCAAGGCCAGGGACCAGGCAAGGGTCCCCCTATATATGTTTGAACTGAAAAT]




>consensus_3579#1
CATGTGGTTGGCTGGGGTGGCTGGCTGGGGTGGCAAGGCCAGGGACCAGGCAAGGGTCCC
CCTATATATGTTTGAACTGAAAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3579#0      GAACACCCATGGGCATGTTCCGTCTATGCAGCATGTGGCCTGGCGTGGGCGTAGCTGACT 60
consensus_3579#1      -------------------------------CATGTGGT-TGGC-TGGG-GTGGCTGGCT 26
                                                     *******  **** **** ** **** **

consensus_3579#0      GGGCGTGGCAAGGCCATGGACCAGGCAAGGGCTCCCCCTATATATGTTTGAACTGAAATC 120
consensus_3579#1      GGG-GTGGCAAGGCCAGGGACCAGGCAAGGG-TCCCCCTATATATGTTTGAACTGAAAAT 84
                      *** ************ ************** **************************  

consensus_3579#0      CTCACTTTGCCACCAAATTGGTCCTTGCCTGTAGACAAAATTTCTAGTTTGATGACTTAG 180
consensus_3579#1      ------------------------------------------------------------