These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3582#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1334 fasta sequence [GCAAATATCACATCACCGAATTCTCCCGAGCTCCGGCGACGTGGTCGCGCATTCCTCTTCTCGCCGGCAGACTCGCCGCCGTCCTCCGCCGCCCCTCTCGCGGCGCAGCGATTCGTCTCCCTCCTCCGCAACCGCGCCCGAGCTCCCCCCTCCTCCCCGCATCCGGTGGATGGCCTCTTCCGCGCCGTCCGCGGCGGCGGGGGCGACCCCGCCGGACCCCCTCCGCCGCGACCGCATCCTCTCCAGCAAGCTCTACCTCGACGTCCCGGGCTCCAAGGCTCCGGTGGTGTACTCGCCGGCGTACGACATCGCCTTCCTCGGGATCGAGAAGCTGCACCCGTTCGATTCCTCCAAATGGGGCCGCATATGCAAGTTCCTCACCAAGGAAGGGCACCTGGAGAAGAACCGAGTGGTGGAGCCATTGGAAGCGACCAAGGACGATTTGCTGGTGGTGCACTCGGAGTCGTACTTGAACAGCCTCAAGAGCAGCCTGAAGGTTGCGTCCATTGTAGAGCTTCCTCCTGTGGCATTCATTCCTAATTGGCTTGTGCAGCAAAAGCTACTGTACCCTTTCAGGAAACAGGTGGGTGGGTCGATTCTATCGGCCAAGCTTGCACTTGAGAGAGGATGGGCCATTAATGTTGGCGGAGGGTTTCACCATTGTTCGGCAGAGCAAGGGGGCGGGTTTTGTGCATATGCTGATATTTCTCTCTGCATTCAGTTTGCTTTTGTCCGTCTAAATATTTCAAGAGTGATGATCATAGATCTGGATGCCCACCAAGGAAATGGCCATGAAAAGGATTTCGCTAATGATGGAAGAGTTTACACTTTGGATATGTACAATGCTGGAATATATCCCTATGATCATGTTGCTAAGCGGTATATTGATCAAAAAGTCGAGCTAGTTAGTGGGACAAAGACAGAAGACTACTTGGATCAACTTGACAAGGCTCTTAAGGTTGCAGAAAGTAGATTTCAGCCTCAGTTGATTGTTTACAATGCTGGGACAGATATCCTGGATGGCGATCCATTGGGAAGATTGAAGATAAGCCCTCAGGGCGTGGTGATCAGAGATGAGAAGGTGTTCAGGTTTGCAAAGGATCAAAGCATCCCACTACTCATGTTAACATCAGGAGGATACATGAAGTCGAGCGCCCGAGTGATCGCCGACTCGATAATCAATCTCTCGAATAAAAACTTGATAGAGCTTGGTAGCCAGCTTGGCTGAACGAGTGCTTAGCCTGAATCGACAGATCGCAGATCTACTGGATGTATATATCCTGTCTATAAGAGGCTTACACTAATGTGATAATGGTATTAATATAAGCCACAAA] [+] EMBL AK100812 [GCAAATATCACATCACCGAATTCTCCCGAGCTCCGGCGACGTGGTCGCGCATTCCTCTTCTCGCCGGCAGACTCGCCGCCGTCCTCCGCCGCCCCTCTCGCGGCGCAGCGATTCGTCTCCCTCCTCCGCAACCGCGCCCGAGCTCCCCCCTCCTCCCCGCATCCGGTGGATGGCCTCTTCCGCGCCGTCCGCGGCGGCGGGGGCGACCCCGCCGGACCCCCTCCGCCGCGACCGCATCCTCTCCAGCAAGCTCTACCTCGACGTCCCGGGCTCCAAGGCTCCGGTGGTGTACTCGCCGGCGTACGACATCGCCTTCCTCGGGATCGAGAAGCTGCACCCGTTCGATTCCTCCAAATGGGGCCGCATATGCAAGTTCCTCACCAAGGAAGGGCACCTGGAGAAGAACCGAGTGGTGGAGCCATTGGAAGCGACCAAGGACGATTTGCTGGTGGTGCACTCGGAGTCGTACTTGAACAGCCTCAAGAGCAGCCTGAAGGTTGCGTCCATTGTAGAGCTTCCTCCTGTGGCATTCATTCCTAATTGGCTTGTGCAGCAAAAGCTACTGTACCCTTTCAGGAAACAGGTGGGTGGGTCGATTCTATCGGCCAAGCTTGCACTTGAGAGAGGATGGGCCATTAATGTTGGCGGAGGGTTTCACCATTGTTCGGCAGAGCAAGGGGGCGGGTTTTGTGCATATGCTGATATTTCTCTCTGCATTCAGTTTGCTTTTGTCCGTCTAAATATTTCAAGAGTGATGATCATAGATCTGGATGCCCACCAAGGAAATGGCCATGAAAAGGATTTCGCTAATGATGGAAGAGTTTACACTTTGGATATGTACAATGCTGGAATATATCCCTATGATCATGTTGCTAAGCGGTATATTGATCAAAAAGTCGAGCTAGTTAGTGGGACAAAGACAGAAGACTACTTGGATCAACTTGACAAGGCTCTTAAGGTTGCAGAAAGTAGATTTCAGCCTCAGTTGATTGTTTACAATGCTGGGACAGATATCCTGGATGGCGATCCATTGGGAAGATTGAAGATAAGCCCTCAGGGCGTGGTGATCAGAGATGAGAAGGTGTTCAGGTTTGCAAAGGATCAAAGCATCCCACTACTCATGTTAACATCAGGAGGATACATGAAGTCGAGCGCCCGAGTGATCGCCGACTCGATAATCAATCTCTCGAATAAAAACTTGATAGAGCTTGGTAGCCAGCTTGGCTGAACGAGTGCTTAGCCTGAATCGACAGATCGCAGATCTACTGGATGTATATATCCTGTCTATAAGAGGCTTACACTAATGTGATAATGGTATTAATATAAGCCACAAA] consensusID : consensus_3582#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 543 fasta sequence [ATCCCCCAAGCTTGCACTTGAGAGAGGATGGGCCATTAATGTTGGCGGAGGGTTTCACCATTGTTCGGCAGAGCAAGGGGGCGGGTTTTGTGCATATGCTGATATTTCTCTCTGCATTCAGTTTGCTTTTGTCCGTCTAAATATTTCAAGAGTGATGATCATAGATCTGGATGCCCACCAAGGAAATGGCCATGAAAAGGATTTCGCTAATGATGGTATGACCTTTACTTTTTCTGCACATTATCTTTTCAATATATAGGTTATTATGATGCCAATTTTCTCTTGCAGGAAGAGTTTACACTTTGGATATGTACAATGCTGGAATATATCCCTATGTAAGAATAACATCTGGAGTATATGGGTTTGTGGTTATACAAGTTCTGGGTTTATTGTGTAGGCTGTAGGGGACACACTTTTGCATTTTATCAGGTTTAGACAACCAGTGTTGAACATATATCAAAACTGAAACTCAAACTGTCTATTTCTGCAATTTATACAAAACTCTCTATTCAAATGTTGTGGTGTTGTTTTTTTGAGACGAAA] [+] EMBL CB621974 [ATCCCCCAAGCTTGCACTTGAGAGAGGATGGGCCATTAATGTTGGCGGAGGGTTTCACCATTGTTCGGCAGAGCAAGGGGGCGGGTTTTGTGCATATGCTGATATTTCTCTCTGCATTCAGTTTGCTTTTGTCCGTCTAAATATTTCAAGAGTGATGATCATAGATCTGGATGCCCACCAAGGAAATGGCCATGAAAAGGATTTCGCTAATGATGGTATGACCTTTACTTTTTCTGCACATTATCTTTTCAATATATAGGTTATTATGATGCCAATTTTCTCTTGCAGGAAGAGTTTACACTTTGGATATGTACAATGCTGGAATATATCCCTATGTAAGAATAACATCTGGAGTATATGGGTTTGTGGTTATACAAGTTCTGGGTTTATTGTGTAGGCTGTAGGGGACACACTTTTGCATTTTATCAGGTTTAGACAACCAGTGTTGAACATATATCAAAACTGAAACTCAAACTGTCTATTTCTGCAATTTATACAAAACTCTCTATTCAAATGTTGTGGTGTTGTTTTTTTGAGACGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3582#0 GCAAATATCACATCACCGAATTCTCCCGAGCTCCGGCGACGTGGTCGCGCATTCCTCTTC 60 consensus_3582#1 ------------------------------------------------------------ consensus_3582#0 TCGCCGGCAGACTCGCCGCCGTCCTCCGCCGCCCCTCTCGCGGCGCAGCGATTCGTCTCC 120 consensus_3582#1 ------------------------------------------------------------ consensus_3582#0 CTCCTCCGCAACCGCGCCCGAGCTCCCCCCTCCTCCCCGCATCCGGTGGATGGCCTCTTC 180 consensus_3582#1 ------------------------------------------------------------ consensus_3582#0 CGCGCCGTCCGCGGCGGCGGGGGCGACCCCGCCGGACCCCCTCCGCCGCGACCGCATCCT 240 consensus_3582#1 ------------------------------------------------------------ consensus_3582#0 CTCCAGCAAGCTCTACCTCGACGTCCCGGGCTCCAAGGCTCCGGTGGTGTACTCGCCGGC 300 consensus_3582#1 ------------------------------------------------------------ consensus_3582#0 GTACGACATCGCCTTCCTCGGGATCGAGAAGCTGCACCCGTTCGATTCCTCCAAATGGGG 360 consensus_3582#1 ------------------------------------------------------------ consensus_3582#0 CCGCATATGCAAGTTCCTCACCAAGGAAGGGCACCTGGAGAAGAACCGAGTGGTGGAGCC 420 consensus_3582#1 ------------------------------------------------------------ consensus_3582#0 ATTGGAAGCGACCAAGGACGATTTGCTGGTGGTGCACTCGGAGTCGTACTTGAACAGCCT 480 consensus_3582#1 ------------------------------------------------------------ consensus_3582#0 CAAGAGCAGCCTGAAGGTTGCGTCCATTGTAGAGCTTCCTCCTGTGGCATTCATTCCTAA 540 consensus_3582#1 ------------------------------------------------------------ consensus_3582#0 TTGGCTTGTGCAGCAAAAGCTACTGTACCCTTTCAGGAAACAGGTGGGTGGGTCGATTCT 600 consensus_3582#1 ------------------------------------------------------------ consensus_3582#0 ATCGGCCAAGCTTGCACTTGAGAGAGGATGGGCCATTAATGTTGGCGGAGGGTTTCACCA 660 consensus_3582#1 ATCCCCCAAGCTTGCACTTGAGAGAGGATGGGCCATTAATGTTGGCGGAGGGTTTCACCA 60 *** ******************************************************* consensus_3582#0 TTGTTCGGCAGAGCAAGGGGGCGGGTTTTGTGCATATGCTGATATTTCTCTCTGCATTCA 720 consensus_3582#1 TTGTTCGGCAGAGCAAGGGGGCGGGTTTTGTGCATATGCTGATATTTCTCTCTGCATTCA 120 ************************************************************ consensus_3582#0 GTTTGCTTTTGTCCGTCTAAATATTTCAAGAGTGATGATCATAGATCTGGATGCCCACCA 780 consensus_3582#1 GTTTGCTTTTGTCCGTCTAAATATTTCAAGAGTGATGATCATAGATCTGGATGCCCACCA 180 ************************************************************ consensus_3582#0 AGGAAATGGCCATGAAAAGGATTTCGCTAATGATGGAAGAGTTTACACTTTGGATATGTA 840 consensus_3582#1 AGGAAATGGCCATGAAAAGGATTTCGCTAATGATGGTATGACCTTTACTTTTTCTGCACA 240 ************************************ * * ***** * * consensus_3582#0 CAATGCTGGAATATATCCCTATGATCATGTTGCTAAGCGGTATATTGATCAAAAAGTCGA 900 consensus_3582#1 TTATCTTTTCA-ATATATAGGTTATTATGATGCCAATTT-TCTCTTGCAGGAAGAGTTTA 298 ** * * **** * ** *** *** ** * * *** ** *** * consensus_3582#0 GCTAGTTAGTGGG-ACAAAGACAGAAGAC-TACTTGGATCAACTTGACA---AGGCTCTT 955 consensus_3582#1 CACTTTGGATATGTACAATGCTGGAATATATCCCTATGTAAGAATAACATCTGGAGTATA 358 * * * **** * *** * * * * * * * *** * * * consensus_3582#0 AAGGTTGCAGAAAGTAGATTTCAGCCTCAGTTGATTGTTTACAATGCTGGGACAGATATC 1015 consensus_3582#1 TGGGTTTGTGGTTATACAAGT---TCTGGGTTTATTGTGTAGGCTGTAGGG---GACACA 412 **** * ** * * ** *** ***** ** ** *** ** * consensus_3582#0 CTGGATGGCGATCCATTGGGAAGATTGAAGATAAGCCCTCAGGGCGTGGTGATCAGAGAT 1075 consensus_3582#1 CTT--TTGCATTTTATCAGGT--TTAGACAACCAGTGTTGAACATATATCAAAACTGAAA 468 ** * ** * ** ** * ** * ** * * * * * consensus_3582#0 GAGAAGGTGTTCAGGTTTGCAAAGGATCAAAGCATCCCACTACTCATGTTAACATCAGGA 1135 consensus_3582#1 CTCAAACTGTCTATTTCTGCAATTTATACAAAACTCTCTATTCAAATGTTGTGGT---GT 525 ** *** * * ***** ** ** ** * * * ***** * * consensus_3582#0 GGATACATGAAGTCGAGCGCCCGAGTGATCGCCGACTCGATAATCAATCTCTCGAATAAA 1195 consensus_3582#1 TGTTTTTTTGAGACGAAA------------------------------------------ 543 * * * ** *** consensus_3582#0 AACTTGATAGAGCTTGGTAGCCAGCTTGGCTGAACGAGTGCTTAGCCTGAATCGACAGAT 1255 consensus_3582#1 ------------------------------------------------------------ consensus_3582#0 CGCAGATCTACTGGATGTATATATCCTGTCTATAAGAGGCTTACACTAATGTGATAATGG 1315 consensus_3582#1 ------------------------------------------------------------ consensus_3582#0 TATTAATATAAGCCACAAA 1334 consensus_3582#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||