cluster # 3582

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Oryza sativa
cluster # 3582 cluster # 3582 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3582#0 length = 1334 sequences # 1

consensus_3582#1 length = 543 sequences # 1

consensusID : consensus_3582#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1334
fasta sequence

                              [GCAAATATCACATCACCGAATTCTCCCGAGCTCCGGCGACGTGGTCGCGCATTCCTCTTCTCGCCGGCAGACTCGCCGCCGTCCTCCGCCGCCCCTCTCGCGGCGCAGCGATTCGTCTCCCTCCTCCGCAACCGCGCCCGAGCTCCCCCCTCCTCCCCGCATCCGGTGGATGGCCTCTTCCGCGCCGTCCGCGGCGGCGGGGGCGACCCCGCCGGACCCCCTCCGCCGCGACCGCATCCTCTCCAGCAAGCTCTACCTCGACGTCCCGGGCTCCAAGGCTCCGGTGGTGTACTCGCCGGCGTACGACATCGCCTTCCTCGGGATCGAGAAGCTGCACCCGTTCGATTCCTCCAAATGGGGCCGCATATGCAAGTTCCTCACCAAGGAAGGGCACCTGGAGAAGAACCGAGTGGTGGAGCCATTGGAAGCGACCAAGGACGATTTGCTGGTGGTGCACTCGGAGTCGTACTTGAACAGCCTCAAGAGCAGCCTGAAGGTTGCGTCCATTGTAGAGCTTCCTCCTGTGGCATTCATTCCTAATTGGCTTGTGCAGCAAAAGCTACTGTACCCTTTCAGGAAACAGGTGGGTGGGTCGATTCTATCGGCCAAGCTTGCACTTGAGAGAGGATGGGCCATTAATGTTGGCGGAGGGTTTCACCATTGTTCGGCAGAGCAAGGGGGCGGGTTTTGTGCATATGCTGATATTTCTCTCTGCATTCAGTTTGCTTTTGTCCGTCTAAATATTTCAAGAGTGATGATCATAGATCTGGATGCCCACCAAGGAAATGGCCATGAAAAGGATTTCGCTAATGATGGAAGAGTTTACACTTTGGATATGTACAATGCTGGAATATATCCCTATGATCATGTTGCTAAGCGGTATATTGATCAAAAAGTCGAGCTAGTTAGTGGGACAAAGACAGAAGACTACTTGGATCAACTTGACAAGGCTCTTAAGGTTGCAGAAAGTAGATTTCAGCCTCAGTTGATTGTTTACAATGCTGGGACAGATATCCTGGATGGCGATCCATTGGGAAGATTGAAGATAAGCCCTCAGGGCGTGGTGATCAGAGATGAGAAGGTGTTCAGGTTTGCAAAGGATCAAAGCATCCCACTACTCATGTTAACATCAGGAGGATACATGAAGTCGAGCGCCCGAGTGATCGCCGACTCGATAATCAATCTCTCGAATAAAAACTTGATAGAGCTTGGTAGCCAGCTTGGCTGAACGAGTGCTTAGCCTGAATCGACAGATCGCAGATCTACTGGATGTATATATCCTGTCTATAAGAGGCTTACACTAATGTGATAATGGTATTAATATAAGCCACAAA]

[+] EMBL AK100812             [GCAAATATCACATCACCGAATTCTCCCGAGCTCCGGCGACGTGGTCGCGCATTCCTCTTCTCGCCGGCAGACTCGCCGCCGTCCTCCGCCGCCCCTCTCGCGGCGCAGCGATTCGTCTCCCTCCTCCGCAACCGCGCCCGAGCTCCCCCCTCCTCCCCGCATCCGGTGGATGGCCTCTTCCGCGCCGTCCGCGGCGGCGGGGGCGACCCCGCCGGACCCCCTCCGCCGCGACCGCATCCTCTCCAGCAAGCTCTACCTCGACGTCCCGGGCTCCAAGGCTCCGGTGGTGTACTCGCCGGCGTACGACATCGCCTTCCTCGGGATCGAGAAGCTGCACCCGTTCGATTCCTCCAAATGGGGCCGCATATGCAAGTTCCTCACCAAGGAAGGGCACCTGGAGAAGAACCGAGTGGTGGAGCCATTGGAAGCGACCAAGGACGATTTGCTGGTGGTGCACTCGGAGTCGTACTTGAACAGCCTCAAGAGCAGCCTGAAGGTTGCGTCCATTGTAGAGCTTCCTCCTGTGGCATTCATTCCTAATTGGCTTGTGCAGCAAAAGCTACTGTACCCTTTCAGGAAACAGGTGGGTGGGTCGATTCTATCGGCCAAGCTTGCACTTGAGAGAGGATGGGCCATTAATGTTGGCGGAGGGTTTCACCATTGTTCGGCAGAGCAAGGGGGCGGGTTTTGTGCATATGCTGATATTTCTCTCTGCATTCAGTTTGCTTTTGTCCGTCTAAATATTTCAAGAGTGATGATCATAGATCTGGATGCCCACCAAGGAAATGGCCATGAAAAGGATTTCGCTAATGATGGAAGAGTTTACACTTTGGATATGTACAATGCTGGAATATATCCCTATGATCATGTTGCTAAGCGGTATATTGATCAAAAAGTCGAGCTAGTTAGTGGGACAAAGACAGAAGACTACTTGGATCAACTTGACAAGGCTCTTAAGGTTGCAGAAAGTAGATTTCAGCCTCAGTTGATTGTTTACAATGCTGGGACAGATATCCTGGATGGCGATCCATTGGGAAGATTGAAGATAAGCCCTCAGGGCGTGGTGATCAGAGATGAGAAGGTGTTCAGGTTTGCAAAGGATCAAAGCATCCCACTACTCATGTTAACATCAGGAGGATACATGAAGTCGAGCGCCCGAGTGATCGCCGACTCGATAATCAATCTCTCGAATAAAAACTTGATAGAGCTTGGTAGCCAGCTTGGCTGAACGAGTGCTTAGCCTGAATCGACAGATCGCAGATCTACTGGATGTATATATCCTGTCTATAAGAGGCTTACACTAATGTGATAATGGTATTAATATAAGCCACAAA]




>consensus_3582#0
GCAAATATCACATCACCGAATTCTCCCGAGCTCCGGCGACGTGGTCGCGCATTCCTCTTC
TCGCCGGCAGACTCGCCGCCGTCCTCCGCCGCCCCTCTCGCGGCGCAGCGATTCGTCTCC
CTCCTCCGCAACCGCGCCCGAGCTCCCCCCTCCTCCCCGCATCCGGTGGATGGCCTCTTC
CGCGCCGTCCGCGGCGGCGGGGGCGACCCCGCCGGACCCCCTCCGCCGCGACCGCATCCT
CTCCAGCAAGCTCTACCTCGACGTCCCGGGCTCCAAGGCTCCGGTGGTGTACTCGCCGGC
GTACGACATCGCCTTCCTCGGGATCGAGAAGCTGCACCCGTTCGATTCCTCCAAATGGGG
CCGCATATGCAAGTTCCTCACCAAGGAAGGGCACCTGGAGAAGAACCGAGTGGTGGAGCC
ATTGGAAGCGACCAAGGACGATTTGCTGGTGGTGCACTCGGAGTCGTACTTGAACAGCCT
CAAGAGCAGCCTGAAGGTTGCGTCCATTGTAGAGCTTCCTCCTGTGGCATTCATTCCTAA
TTGGCTTGTGCAGCAAAAGCTACTGTACCCTTTCAGGAAACAGGTGGGTGGGTCGATTCT
ATCGGCCAAGCTTGCACTTGAGAGAGGATGGGCCATTAATGTTGGCGGAGGGTTTCACCA
TTGTTCGGCAGAGCAAGGGGGCGGGTTTTGTGCATATGCTGATATTTCTCTCTGCATTCA
GTTTGCTTTTGTCCGTCTAAATATTTCAAGAGTGATGATCATAGATCTGGATGCCCACCA
AGGAAATGGCCATGAAAAGGATTTCGCTAATGATGGAAGAGTTTACACTTTGGATATGTA
CAATGCTGGAATATATCCCTATGATCATGTTGCTAAGCGGTATATTGATCAAAAAGTCGA
GCTAGTTAGTGGGACAAAGACAGAAGACTACTTGGATCAACTTGACAAGGCTCTTAAGGT
TGCAGAAAGTAGATTTCAGCCTCAGTTGATTGTTTACAATGCTGGGACAGATATCCTGGA
TGGCGATCCATTGGGAAGATTGAAGATAAGCCCTCAGGGCGTGGTGATCAGAGATGAGAA
GGTGTTCAGGTTTGCAAAGGATCAAAGCATCCCACTACTCATGTTAACATCAGGAGGATA
CATGAAGTCGAGCGCCCGAGTGATCGCCGACTCGATAATCAATCTCTCGAATAAAAACTT
GATAGAGCTTGGTAGCCAGCTTGGCTGAACGAGTGCTTAGCCTGAATCGACAGATCGCAG
ATCTACTGGATGTATATATCCTGTCTATAAGAGGCTTACACTAATGTGATAATGGTATTA
ATATAAGCCACAAA

consensusID : consensus_3582#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 543
fasta sequence

                              [ATCCCCCAAGCTTGCACTTGAGAGAGGATGGGCCATTAATGTTGGCGGAGGGTTTCACCATTGTTCGGCAGAGCAAGGGGGCGGGTTTTGTGCATATGCTGATATTTCTCTCTGCATTCAGTTTGCTTTTGTCCGTCTAAATATTTCAAGAGTGATGATCATAGATCTGGATGCCCACCAAGGAAATGGCCATGAAAAGGATTTCGCTAATGATGGTATGACCTTTACTTTTTCTGCACATTATCTTTTCAATATATAGGTTATTATGATGCCAATTTTCTCTTGCAGGAAGAGTTTACACTTTGGATATGTACAATGCTGGAATATATCCCTATGTAAGAATAACATCTGGAGTATATGGGTTTGTGGTTATACAAGTTCTGGGTTTATTGTGTAGGCTGTAGGGGACACACTTTTGCATTTTATCAGGTTTAGACAACCAGTGTTGAACATATATCAAAACTGAAACTCAAACTGTCTATTTCTGCAATTTATACAAAACTCTCTATTCAAATGTTGTGGTGTTGTTTTTTTGAGACGAAA]

[+] EMBL CB621974             [ATCCCCCAAGCTTGCACTTGAGAGAGGATGGGCCATTAATGTTGGCGGAGGGTTTCACCATTGTTCGGCAGAGCAAGGGGGCGGGTTTTGTGCATATGCTGATATTTCTCTCTGCATTCAGTTTGCTTTTGTCCGTCTAAATATTTCAAGAGTGATGATCATAGATCTGGATGCCCACCAAGGAAATGGCCATGAAAAGGATTTCGCTAATGATGGTATGACCTTTACTTTTTCTGCACATTATCTTTTCAATATATAGGTTATTATGATGCCAATTTTCTCTTGCAGGAAGAGTTTACACTTTGGATATGTACAATGCTGGAATATATCCCTATGTAAGAATAACATCTGGAGTATATGGGTTTGTGGTTATACAAGTTCTGGGTTTATTGTGTAGGCTGTAGGGGACACACTTTTGCATTTTATCAGGTTTAGACAACCAGTGTTGAACATATATCAAAACTGAAACTCAAACTGTCTATTTCTGCAATTTATACAAAACTCTCTATTCAAATGTTGTGGTGTTGTTTTTTTGAGACGAAA]




>consensus_3582#1
ATCCCCCAAGCTTGCACTTGAGAGAGGATGGGCCATTAATGTTGGCGGAGGGTTTCACCA
TTGTTCGGCAGAGCAAGGGGGCGGGTTTTGTGCATATGCTGATATTTCTCTCTGCATTCA
GTTTGCTTTTGTCCGTCTAAATATTTCAAGAGTGATGATCATAGATCTGGATGCCCACCA
AGGAAATGGCCATGAAAAGGATTTCGCTAATGATGGTATGACCTTTACTTTTTCTGCACA
TTATCTTTTCAATATATAGGTTATTATGATGCCAATTTTCTCTTGCAGGAAGAGTTTACA
CTTTGGATATGTACAATGCTGGAATATATCCCTATGTAAGAATAACATCTGGAGTATATG
GGTTTGTGGTTATACAAGTTCTGGGTTTATTGTGTAGGCTGTAGGGGACACACTTTTGCA
TTTTATCAGGTTTAGACAACCAGTGTTGAACATATATCAAAACTGAAACTCAAACTGTCT
ATTTCTGCAATTTATACAAAACTCTCTATTCAAATGTTGTGGTGTTGTTTTTTTGAGACG
AAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3582#0      GCAAATATCACATCACCGAATTCTCCCGAGCTCCGGCGACGTGGTCGCGCATTCCTCTTC 60
consensus_3582#1      ------------------------------------------------------------
                                                                                  

consensus_3582#0      TCGCCGGCAGACTCGCCGCCGTCCTCCGCCGCCCCTCTCGCGGCGCAGCGATTCGTCTCC 120
consensus_3582#1      ------------------------------------------------------------
                                                                                  

consensus_3582#0      CTCCTCCGCAACCGCGCCCGAGCTCCCCCCTCCTCCCCGCATCCGGTGGATGGCCTCTTC 180
consensus_3582#1      ------------------------------------------------------------
                                                                                  

consensus_3582#0      CGCGCCGTCCGCGGCGGCGGGGGCGACCCCGCCGGACCCCCTCCGCCGCGACCGCATCCT 240
consensus_3582#1      ------------------------------------------------------------
                                                                                  

consensus_3582#0      CTCCAGCAAGCTCTACCTCGACGTCCCGGGCTCCAAGGCTCCGGTGGTGTACTCGCCGGC 300
consensus_3582#1      ------------------------------------------------------------
                                                                                  

consensus_3582#0      GTACGACATCGCCTTCCTCGGGATCGAGAAGCTGCACCCGTTCGATTCCTCCAAATGGGG 360
consensus_3582#1      ------------------------------------------------------------
                                                                                  

consensus_3582#0      CCGCATATGCAAGTTCCTCACCAAGGAAGGGCACCTGGAGAAGAACCGAGTGGTGGAGCC 420
consensus_3582#1      ------------------------------------------------------------
                                                                                  

consensus_3582#0      ATTGGAAGCGACCAAGGACGATTTGCTGGTGGTGCACTCGGAGTCGTACTTGAACAGCCT 480
consensus_3582#1      ------------------------------------------------------------
                                                                                  

consensus_3582#0      CAAGAGCAGCCTGAAGGTTGCGTCCATTGTAGAGCTTCCTCCTGTGGCATTCATTCCTAA 540
consensus_3582#1      ------------------------------------------------------------
                                                                                  

consensus_3582#0      TTGGCTTGTGCAGCAAAAGCTACTGTACCCTTTCAGGAAACAGGTGGGTGGGTCGATTCT 600
consensus_3582#1      ------------------------------------------------------------
                                                                                  

consensus_3582#0      ATCGGCCAAGCTTGCACTTGAGAGAGGATGGGCCATTAATGTTGGCGGAGGGTTTCACCA 660
consensus_3582#1      ATCCCCCAAGCTTGCACTTGAGAGAGGATGGGCCATTAATGTTGGCGGAGGGTTTCACCA 60
                      ***  *******************************************************

consensus_3582#0      TTGTTCGGCAGAGCAAGGGGGCGGGTTTTGTGCATATGCTGATATTTCTCTCTGCATTCA 720
consensus_3582#1      TTGTTCGGCAGAGCAAGGGGGCGGGTTTTGTGCATATGCTGATATTTCTCTCTGCATTCA 120
                      ************************************************************

consensus_3582#0      GTTTGCTTTTGTCCGTCTAAATATTTCAAGAGTGATGATCATAGATCTGGATGCCCACCA 780
consensus_3582#1      GTTTGCTTTTGTCCGTCTAAATATTTCAAGAGTGATGATCATAGATCTGGATGCCCACCA 180
                      ************************************************************

consensus_3582#0      AGGAAATGGCCATGAAAAGGATTTCGCTAATGATGGAAGAGTTTACACTTTGGATATGTA 840
consensus_3582#1      AGGAAATGGCCATGAAAAGGATTTCGCTAATGATGGTATGACCTTTACTTTTTCTGCACA 240
                      ************************************ *     *  *****   *    *

consensus_3582#0      CAATGCTGGAATATATCCCTATGATCATGTTGCTAAGCGGTATATTGATCAAAAAGTCGA 900
consensus_3582#1      TTATCTTTTCA-ATATATAGGTTATTATGATGCCAATTT-TCTCTTGCAGGAAGAGTTTA 298
                        **  *   * ****     * ** *** *** **    * * ***    ** ***  *

consensus_3582#0      GCTAGTTAGTGGG-ACAAAGACAGAAGAC-TACTTGGATCAACTTGACA---AGGCTCTT 955
consensus_3582#1      CACTTTGGATATGTACAATGCTGGAATATATCCCTATGTAAGAATAACATCTGGAGTATA 358
                           *   *  * **** *   *** *  * * *   * *   * ***    *  * * 

consensus_3582#0      AAGGTTGCAGAAAGTAGATTTCAGCCTCAGTTGATTGTTTACAATGCTGGGACAGATATC 1015
consensus_3582#1      TGGGTTTGTGGTTATACAAGT---TCTGGGTTTATTGTGTAGGCTGTAGGG---GACACA 412
                        ****   *    ** *  *    **  *** ***** **   **  ***   ** *  

consensus_3582#0      CTGGATGGCGATCCATTGGGAAGATTGAAGATAAGCCCTCAGGGCGTGGTGATCAGAGAT 1075
consensus_3582#1      CTT--TTGCATTTTATCAGGT--TTAGACAACCAGTGTTGAACATATATCAAAACTGAAA 468
                      **   * **  *  **  **    * **  *  **   * *     *    *      * 

consensus_3582#0      GAGAAGGTGTTCAGGTTTGCAAAGGATCAAAGCATCCCACTACTCATGTTAACATCAGGA 1135
consensus_3582#1      CTCAAACTGTCTATTTCTGCAATTTATACAAAACTCTCTATTCAAATGTTGTGGT---GT 525
                         **  ***  *  * *****   **  **   ** *  * *  *****    *   * 

consensus_3582#0      GGATACATGAAGTCGAGCGCCCGAGTGATCGCCGACTCGATAATCAATCTCTCGAATAAA 1195
consensus_3582#1      TGTTTTTTTGAGACGAAA------------------------------------------ 543
                       * *   *  ** ***                                            

consensus_3582#0      AACTTGATAGAGCTTGGTAGCCAGCTTGGCTGAACGAGTGCTTAGCCTGAATCGACAGAT 1255
consensus_3582#1      ------------------------------------------------------------
                                                                                  

consensus_3582#0      CGCAGATCTACTGGATGTATATATCCTGTCTATAAGAGGCTTACACTAATGTGATAATGG 1315
consensus_3582#1      ------------------------------------------------------------
                                                                                  

consensus_3582#0      TATTAATATAAGCCACAAA 1334
consensus_3582#1      -------------------