cluster # 3584

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Oryza sativa
cluster # 3584 cluster # 3584 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3584#0 length = 1035 sequences # 1

consensus_3584#1 length = 288 sequences # 1

consensusID : consensus_3584#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1035
fasta sequence

                              [GACCGATCCCCAATTCGCCGCGCGCGCGCACGGCGGCGGCGGCGAGCCGGCGACCTCCCCCTCCGCCGCCATGGACGGCCGCCGCAACGGCGAGCACCAGCCGACCCGGTGGCCGCCGGGTGCGGGGGTGGAGGAGAGGGACAACGCCTCCTCCTCCCCCGCCTCCATCCTCCTCTTCGCCCTCATCGGCGCCACCGCCACCACCGCCGCGTTTGGTCAGCTGCGCAGGACGATGAGCTGGTTCTACACGCAGCTTAGTAGGTCGGAGCCTTATGTGTACTGGGAAGACATACCACGTCGACCGAATCGGCGTGGTGAAGCCTGGGGCCAGTATTACCAGAGGATGCGCGAGAAGAGTGAGGATCAGAGGGAGAGAGTGGAACGCATAAGGCACATGCAAGATATGTTCAAGAAGGAGAGAAGTGAATGTCGGGATTACCGAACTCGGGATGGCCATAATCCAAGCTACTATCAGAATAGTCGAAGAGAGGAGTGGTACTGGGATGCAGAGTCATTTTATGCTAACCAAAGAACAAATTTCAGATCGATGCCCAGGGAAGCCATGGGTTACACTATGTCACAGCACTACTCTATCTTGGGTCTTGACAGGTCAAGATTGGAGCCATTCTCAGATGCTGAAATTAAGAATGCATTTAGGAGAAAAGCGATGGAGTATCATCCAGATCAAAACCAACATAACAAAGAGTTTGCTGAGGCAAAATTCAAAGAGGTCATGGATTCCTATGAAGCAATAAAATTAGAAAGGCAAAATGGAAGTTTATGAATGCGCTCACAATGGAGGGCTGTTGTATATAAGGCGTTTGACACAAGATAAAACATGTCTTAACCTTGATTGCTGTTTTGCTTCTTTTTTCACTATTTATGTAAGCAACAACAAATAGTTATCTGTTGTGGGTGCTGAACCGCAGATTGTTGCCAAGATATCTAGCTGTCAGACCAGCTGTTGTAGGACATGCTGTCCTTGATAAAAATCCTCGTGTAGAAGTTTTGCTCTCACAAACAAAAGGCAGAATT]

[+] EMBL AK068837             [GACCGATCCCCAATTCGCCGCGCGCGCGCACGGCGGCGGCGGCGAGCCGGCGACCTCCCCCTCCGCCGCCATGGACGGCCGCCGCAACGGCGAGCACCAGCCGACCCGGTGGCCGCCGGGTGCGGGGGTGGAGGAGAGGGACAACGCCTCCTCCTCCCCCGCCTCCATCCTCCTCTTCGCCCTCATCGGCGCCACCGCCACCACCGCCGCGTTTGGTCAGCTGCGCAGGACGATGAGCTGGTTCTACACGCAGCTTAGTAGGTCGGAGCCTTATGTGTACTGGGAAGACATACCACGTCGACCGAATCGGCGTGGTGAAGCCTGGGGCCAGTATTACCAGAGGATGCGCGAGAAGAGTGAGGATCAGAGGGAGAGAGTGGAACGCATAAGGCACATGCAAGATATGTTCAAGAAGGAGAGAAGTGAATGTCGGGATTACCGAACTCGGGATGGCCATAATCCAAGCTACTATCAGAATAGTCGAAGAGAGGAGTGGTACTGGGATGCAGAGTCATTTTATGCTAACCAAAGAACAAATTTCAGATCGATGCCCAGGGAAGCCATGGGTTACACTATGTCACAGCACTACTCTATCTTGGGTCTTGACAGGTCAAGATTGGAGCCATTCTCAGATGCTGAAATTAAGAATGCATTTAGGAGAAAAGCGATGGAGTATCATCCAGATCAAAACCAACATAACAAAGAGTTTGCTGAGGCAAAATTCAAAGAGGTCATGGATTCCTATGAAGCAATAAAATTAGAAAGGCAAAATGGAAGTTTATGAATGCGCTCACAATGGAGGGCTGTTGTATATAAGGCGTTTGACACAAGATAAAACATGTCTTAACCTTGATTGCTGTTTTGCTTCTTTTTTCACTATTTATGTAAGCAACAACAAATAGTTATCTGTTGTGGGTGCTGAACCGCAGATTGTTGCCAAGATATCTAGCTGTCAGACCAGCTGTTGTAGGACATGCTGTCCTTGATAAAAATCCTCGTGTAGAAGTTTTGCTCTCACAAACAAAAGGCAGAATT]




>consensus_3584#0
GACCGATCCCCAATTCGCCGCGCGCGCGCACGGCGGCGGCGGCGAGCCGGCGACCTCCCC
CTCCGCCGCCATGGACGGCCGCCGCAACGGCGAGCACCAGCCGACCCGGTGGCCGCCGGG
TGCGGGGGTGGAGGAGAGGGACAACGCCTCCTCCTCCCCCGCCTCCATCCTCCTCTTCGC
CCTCATCGGCGCCACCGCCACCACCGCCGCGTTTGGTCAGCTGCGCAGGACGATGAGCTG
GTTCTACACGCAGCTTAGTAGGTCGGAGCCTTATGTGTACTGGGAAGACATACCACGTCG
ACCGAATCGGCGTGGTGAAGCCTGGGGCCAGTATTACCAGAGGATGCGCGAGAAGAGTGA
GGATCAGAGGGAGAGAGTGGAACGCATAAGGCACATGCAAGATATGTTCAAGAAGGAGAG
AAGTGAATGTCGGGATTACCGAACTCGGGATGGCCATAATCCAAGCTACTATCAGAATAG
TCGAAGAGAGGAGTGGTACTGGGATGCAGAGTCATTTTATGCTAACCAAAGAACAAATTT
CAGATCGATGCCCAGGGAAGCCATGGGTTACACTATGTCACAGCACTACTCTATCTTGGG
TCTTGACAGGTCAAGATTGGAGCCATTCTCAGATGCTGAAATTAAGAATGCATTTAGGAG
AAAAGCGATGGAGTATCATCCAGATCAAAACCAACATAACAAAGAGTTTGCTGAGGCAAA
ATTCAAAGAGGTCATGGATTCCTATGAAGCAATAAAATTAGAAAGGCAAAATGGAAGTTT
ATGAATGCGCTCACAATGGAGGGCTGTTGTATATAAGGCGTTTGACACAAGATAAAACAT
GTCTTAACCTTGATTGCTGTTTTGCTTCTTTTTTCACTATTTATGTAAGCAACAACAAAT
AGTTATCTGTTGTGGGTGCTGAACCGCAGATTGTTGCCAAGATATCTAGCTGTCAGACCA
GCTGTTGTAGGACATGCTGTCCTTGATAAAAATCCTCGTGTAGAAGTTTTGCTCTCACAA
ACAAAAGGCAGAATT

consensusID : consensus_3584#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 288
fasta sequence

                              [GCCGCAACNGCACCAGCCGACCCGGTGGCCGCCNCGGGGTGGAGGAGAGGGACAACGCCTCCTCCTCCCNTCCATCCTCCTCTNNNCCCTCATCGGNCCACCGCACCACCGCCGCGTTTGGTCAGCTNCNAGGACGACGAGCTGGTTCTACACNCAGCTTAGTAGGTCGGAGCTTATGTGTACTGGGAAGACATACCACGTCGACCGATCGANNCGAANGGGGCCAGTATACAGAGAGCGCGAGAAGAGTGAGGATCAGAGGAGAGAGNANATANCCAATCGAGAAGT]

[+] EMBL D42319               [GCCGCAACNGCACCAGCCGACCCGGTGGCCGCCNCGGGGTGGAGGAGAGGGACAACGCCTCCTCCTCCCNTCCATCCTCCTCTNNNCCCTCATCGGNCCACCGCACCACCGCCGCGTTTGGTCAGCTNCNAGGACGACGAGCTGGTTCTACACNCAGCTTAGTAGGTCGGAGCTTATGTGTACTGGGAAGACATACCACGTCGACCGATCGANNCGAANGGGGCCAGTATACAGAGAGCGCGAGAAGAGTGAGGATCAGAGGAGAGAGNANATANCCAATCGAGAAGT]




>consensus_3584#1
GCCGCAACNGCACCAGCCGACCCGGTGGCCGCCNCGGGGTGGAGGAGAGGGACAACGCCT
CCTCCTCCCNTCCATCCTCCTCTNNNCCCTCATCGGNCCACCGCACCACCGCCGCGTTTG
GTCAGCTNCNAGGACGACGAGCTGGTTCTACACNCAGCTTAGTAGGTCGGAGCTTATGTG
TACTGGGAAGACATACCACGTCGACCGATCGANNCGAANGGGGCCAGTATACAGAGAGCG
CGAGAAGAGTGAGGATCAGAGGAGAGAGNANATANCCAATCGAGAAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3584#0      GACCGATCCCCAATTCGCCGCGCGCGCGCACGGCGGCGGCGGCGAGCCGGCGACCTCCCC 60
consensus_3584#1      ------------------------------------------------------------
                                                                                  

consensus_3584#0      CTCCGCCGCCATGGACGGCCGCCGCAACGGCGAGCACCAGCCGACCCGGTGGCCGCCGGG 120
consensus_3584#1      --------------------GCCGCAAC----NGCACCAGCCGACCCGGTGGCCGCCNCG 36
                                          ********     ************************  *

consensus_3584#0      TGCGGGGGTGGAGGAGAGGGACAACGCCTCCTCCTCCCCCGCCTCCATCCTCCTCTTCGC 180
consensus_3584#1      -----GGGTGGAGGAGAGGGACAACGCCTCCTCCTCC----CNTCCATCCTCCTCTNNNC 87
                           ********************************    * *************   *

consensus_3584#0      CCTCATCGGCGCCACCGCCACCACCGCCGCGTTTGGTCAGCTGCGCAGGACGATGAGCTG 240
consensus_3584#1      CCTCATCGGN-CCACCGC-ACCACCGCCGCGTTTGGTCAGCTNCN-AGGACGACGAGCTG 144
                      *********  ******* *********************** *  ******* ******

consensus_3584#0      GTTCTACACGCAGCTTAGTAGGTCGGAGCCTTATGTGTACTGGGAAGACATACCACGTCG 300
consensus_3584#1      GTTCTACACNCAGCTTAGTAGGTCGGAGC-TTATGTGTACTGGGAAGACATACCACGTCG 203
                      ********* ******************* ******************************

consensus_3584#0      ACCGAATCGGCGTGGTGAAGCCTGGGGCCAGTATTACCAGAGGATGCGCGAGAAGAGTGA 360
consensus_3584#1      ACCGAT----CGANNCGAA---NGGGGCCAGTAT----ACAGAGAGCGCGAGAAGAGTGA 252
                      *****     **    ***    ***********    * **   ***************

consensus_3584#0      GGATCAGAGG-GAGAGAGTGGAACGCATAAGGCACATGCAAGATATGTTCAAGAAGGAGA 419
consensus_3584#1      GGATCAGAGGAGAGAGNANATANCCAATCGAGAAGT------------------------ 288
                      ********** *****     * *  **   * *                          

consensus_3584#0      GAAGTGAATGTCGGGATTACCGAACTCGGGATGGCCATAATCCAAGCTACTATCAGAATA 479
consensus_3584#1      ------------------------------------------------------------
                                                                                  

consensus_3584#0      GTCGAAGAGAGGAGTGGTACTGGGATGCAGAGTCATTTTATGCTAACCAAAGAACAAATT 539
consensus_3584#1      ------------------------------------------------------------
                                                                                  

consensus_3584#0      TCAGATCGATGCCCAGGGAAGCCATGGGTTACACTATGTCACAGCACTACTCTATCTTGG 599
consensus_3584#1      ------------------------------------------------------------
                                                                                  

consensus_3584#0      GTCTTGACAGGTCAAGATTGGAGCCATTCTCAGATGCTGAAATTAAGAATGCATTTAGGA 659
consensus_3584#1      ------------------------------------------------------------
                                                                                  

consensus_3584#0      GAAAAGCGATGGAGTATCATCCAGATCAAAACCAACATAACAAAGAGTTTGCTGAGGCAA 719
consensus_3584#1      ------------------------------------------------------------
                                                                                  

consensus_3584#0      AATTCAAAGAGGTCATGGATTCCTATGAAGCAATAAAATTAGAAAGGCAAAATGGAAGTT 779
consensus_3584#1      ------------------------------------------------------------
                                                                                  

consensus_3584#0      TATGAATGCGCTCACAATGGAGGGCTGTTGTATATAAGGCGTTTGACACAAGATAAAACA 839
consensus_3584#1      ------------------------------------------------------------
                                                                                  

consensus_3584#0      TGTCTTAACCTTGATTGCTGTTTTGCTTCTTTTTTCACTATTTATGTAAGCAACAACAAA 899
consensus_3584#1      ------------------------------------------------------------
                                                                                  

consensus_3584#0      TAGTTATCTGTTGTGGGTGCTGAACCGCAGATTGTTGCCAAGATATCTAGCTGTCAGACC 959
consensus_3584#1      ------------------------------------------------------------
                                                                                  

consensus_3584#0      AGCTGTTGTAGGACATGCTGTCCTTGATAAAAATCCTCGTGTAGAAGTTTTGCTCTCACA 1019
consensus_3584#1      ------------------------------------------------------------
                                                                                  

consensus_3584#0      AACAAAAGGCAGAATT 1035
consensus_3584#1      ----------------