cluster # 3590

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3590 cluster # 3590 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3590#0 length = 516 sequences # 1

consensus_3590#1 length = 281 sequences # 1

consensusID : consensus_3590#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 516
fasta sequence

                              [ACCTCCTCCTTGTTGAAAAATCTTAGCAGATCCACCTCCTCAATGTGCTTATAGCCGGGTCTTGCGACGTTCTTGAAAATGGCAGATGCAGCTGCCTTTGCCTCCCACTCATTATTTATCTCCTTATCCTTCTGCTCCATGCCATCAACATCATCAAAGCTCTCGATCGTATTAGATATCGTTGACAGCCTTGAGCTTCCGATTGCCGCCATCAACCCTTTCATCGTCCACGCCGACACCTTCTCCTGGACACATAATTGAGAATTCTGGCCGTCTTGGCCGATCGCCCGACGTCGCGGTCGAAGAGCTGCGACCAGGCGATGAGCACGAGCCCGATCCAGAGGCAGACCTGGACGCTCTTCTTGAGGCCGAAGACGAAGTAGAGCACCTTGTTGCGGAGGAGGAAGTTGCGCTCGACGAGGAAGACGACGAGCGTGACGACCCAATGGCTGACGAGGTGGCCGGAGAAGACGCAGATGACCATGACGCACCACTTCCAGATCTCCAGGCCCCAGA]

[+] EMBL AU092498             [ACCTCCTCCTTGTTGAAAAATCTTAGCAGATCCACCTCCTCAATGTGCTTATAGCCGGGTCTTGCGACGTTCTTGAAAATGGCAGATGCAGCTGCCTTTGCCTCCCACTCATTATTTATCTCCTTATCCTTCTGCTCCATGCCATCAACATCATCAAAGCTCTCGATCGTATTAGATATCGTTGACAGCCTTGAGCTTCCGATTGCCGCCATCAACCCTTTCATCGTCCACGCCGACACCTTCTCCTGGACACATAATTGAGAATTCTGGCCGTCTTGGCCGATCGCCCGACGTCGCGGTCGAAGAGCTGCGACCAGGCGATGAGCACGAGCCCGATCCAGAGGCAGACCTGGACGCTCTTCTTGAGGCCGAAGACGAAGTAGAGCACCTTGTTGCGGAGGAGGAAGTTGCGCTCGACGAGGAAGACGACGAGCGTGACGACCCAATGGCTGACGAGGTGGCCGGAGAAGACGCAGATGACCATGACGCACCACTTCCAGATCTCCAGGCCCCAGA]




>consensus_3590#0
ACCTCCTCCTTGTTGAAAAATCTTAGCAGATCCACCTCCTCAATGTGCTTATAGCCGGGT
CTTGCGACGTTCTTGAAAATGGCAGATGCAGCTGCCTTTGCCTCCCACTCATTATTTATC
TCCTTATCCTTCTGCTCCATGCCATCAACATCATCAAAGCTCTCGATCGTATTAGATATC
GTTGACAGCCTTGAGCTTCCGATTGCCGCCATCAACCCTTTCATCGTCCACGCCGACACC
TTCTCCTGGACACATAATTGAGAATTCTGGCCGTCTTGGCCGATCGCCCGACGTCGCGGT
CGAAGAGCTGCGACCAGGCGATGAGCACGAGCCCGATCCAGAGGCAGACCTGGACGCTCT
TCTTGAGGCCGAAGACGAAGTAGAGCACCTTGTTGCGGAGGAGGAAGTTGCGCTCGACGA
GGAAGACGACGAGCGTGACGACCCAATGGCTGACGAGGTGGCCGGAGAAGACGCAGATGA
CCATGACGCACCACTTCCAGATCTCCAGGCCCCAGA

consensusID : consensus_3590#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 281
fasta sequence

                              [AATGAGCACGGAGGCGAGAAACCTGGACACATAATTGAGAATTCTGGCCGTCTTGGCCGATCGCCCGACGTCGCGGTCGAAGAGCTGCGACCAGGCGATGAGCACGAGCCCGATCCAGAGGCAGACCTGGACGCTCTTCTTGAGGCCGAAGACGAAGTAGAGCACCTTGTTGCGGAGGAGGAAGTTGCGCTCGACGAGGAAGACGACGAGCGTGACGACCCAATGGCTGACGAGGTGGCCGGAGAAGACGCAGATGACCATGACGCACCACTTCCAGATCT]

[-] EMBL AU176400             [AATGAGCACGGAGGCGAGAAACCTGGACACATAATTGAGAATTCTGGCCGTCTTGGCCGATCGCCCGACGTCGCGGTCGAAGAGCTGCGACCAGGCGATGAGCACGAGCCCGATCCAGAGGCAGACCTGGACGCTCTTCTTGAGGCCGAAGACGAAGTAGAGCACCTTGTTGCGGAGGAGGAAGTTGCGCTCGACGAGGAAGACGACGAGCGTGACGACCCAATGGCTGACGAGGTGGCCGGAGAAGACGCAGATGACCATGACGCACCACTTCCAGATCT]




>consensus_3590#1
AATGAGCACGGAGGCGAGAAACCTGGACACATAATTGAGAATTCTGGCCGTCTTGGCCGA
TCGCCCGACGTCGCGGTCGAAGAGCTGCGACCAGGCGATGAGCACGAGCCCGATCCAGAG
GCAGACCTGGACGCTCTTCTTGAGGCCGAAGACGAAGTAGAGCACCTTGTTGCGGAGGAG
GAAGTTGCGCTCGACGAGGAAGACGACGAGCGTGACGACCCAATGGCTGACGAGGTGGCC
GGAGAAGACGCAGATGACCATGACGCACCACTTCCAGATCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3590#0      ACCTCCTCCTTGTTGAAAAATCTTAGCAGATCCACCTCCTCAATGTGCTTATAGCCGGGT 60
consensus_3590#1      ------------------------------------------------------------
                                                                                  

consensus_3590#0      CTTGCGACGTTCTTGAAAATGGCAGATGCAGCTGCCTTTGCCTCCCACTCATTATTTATC 120
consensus_3590#1      ------------------------------------------------------------
                                                                                  

consensus_3590#0      TCCTTATCCTTCTGCTCCATGCCATCAACATCATCAAAGCTCTCGATCGTATTAGATATC 180
consensus_3590#1      ------------------------------------------------------------
                                                                                  

consensus_3590#0      GTTGACAGCCTTGAGCTTCCGATTGCCGCCATCAACCCTTTCATCGTCCACGCCGACACC 240
consensus_3590#1      ------------------------------------------AATGAGCACGGAGGCGAG 18
                                                                *  *  ****  * *   

consensus_3590#0      TTCTCCTGGACACATAATTGAGAATTCTGGCCGTCTTGGCCGATCGCCCGACGTCGCGGT 300
consensus_3590#1      AAA-CCTGGACACATAATTGAGAATTCTGGCCGTCTTGGCCGATCGCCCGACGTCGCGGT 77
                          ********************************************************

consensus_3590#0      CGAAGAGCTGCGACCAGGCGATGAGCACGAGCCCGATCCAGAGGCAGACCTGGACGCTCT 360
consensus_3590#1      CGAAGAGCTGCGACCAGGCGATGAGCACGAGCCCGATCCAGAGGCAGACCTGGACGCTCT 137
                      ************************************************************

consensus_3590#0      TCTTGAGGCCGAAGACGAAGTAGAGCACCTTGTTGCGGAGGAGGAAGTTGCGCTCGACGA 420
consensus_3590#1      TCTTGAGGCCGAAGACGAAGTAGAGCACCTTGTTGCGGAGGAGGAAGTTGCGCTCGACGA 197
                      ************************************************************

consensus_3590#0      GGAAGACGACGAGCGTGACGACCCAATGGCTGACGAGGTGGCCGGAGAAGACGCAGATGA 480
consensus_3590#1      GGAAGACGACGAGCGTGACGACCCAATGGCTGACGAGGTGGCCGGAGAAGACGCAGATGA 257
                      ************************************************************

consensus_3590#0      CCATGACGCACCACTTCCAGATCTCCAGGCCCCAGA 516
consensus_3590#1      CCATGACGCACCACTTCCAGATCT------------ 281
                      ************************