These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3596#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1792 fasta sequence [CCGTCCTCTCCTCGCCCACCGCCGCCGCCGCCGCCGCCCATCCTCCTTCCTCTCCTCGGGCGCTGAACCGCCGAGCTGAGCAGCCGCCCCGCCGCCCCCTCCTCCGCCGCCACAAGCCCGATCGAGGGGTGTCTCGCCCGGGATATATATATATGGCGGCGGGGCCGGCGGGGATCGTGTGGCAGACGCCGGCGAACCCGCCGGAGCGGCAGGACTACATCTTCCGCGACGGTAGTAGCAACCCGCAGCCCGGCCTCCGTCTCGTCCCCAACGCGCGCATCTTTCTTTCTGCCCGCCAAACCCCCTCCCCGGAGGCCCCGGACTGACGCGGTTGGTTATTCCCCCCCCATTTTGCTTCGCAGGGCGGCGCTACGTGAGGCCCTACTACTTCGAGTTCATCTCCCATGTGAAAAACAGATGGGCTGGGAAGACCATTGTTGACCTCTTCACCGATGAGTTCAAGGGCCGGCCTCGTGAATATTATGTTCATGCAGTGAAGTGTGGGAGGCTTCAGGTGGATGACCAAATGGTTCACGCAGACTATGTTGTGCAATCATCACAAAAGATAAGCCATTTCTTGCACAGGCATGAACCTCCAGTTTTGGGTGGTGATATTACAATCCTTCAAAATGAAGCTGATGTTGTTACAGTTTGCAAACCTGCATCTGTTCCAGTTCATCCGTGTGGTCAATACCGCAAGAATACTGTTGTCGGTATTCTGCAAGCTGAACATGGATTGGTGCCCCTATTTCTATTTTGACAGCCGTGCATCGGCTAGATCGGTTAGTTTCAGGTCTCCTTATATTTGCTAAAAATGCTGACAAAGCTGAAAGTTTCAGGCAACAGATCGAAGCTAGTTTGCTGCAGAAAGAATATGTGGCCAAGGTTGTTGGGGTGTTTCCTGATGGTGAGCAAACTGTTAATGCAAATGTGCACTTCAACGCACGGGAAGGAAGGAGCACTGCAGAGGTTTGTGATGGTGATGGTAAAGCTCCAATTGGAAAACAAGCCTGCACCAAGTTTCAGAGGATCTGTACTGATGGAATCCACAGCATTGTCCTGTGCAAACCTGTGACTGGCCGGACTCATCAGGTCACACTACCTTATACACATCAACATTGATTTGCTCGTTCAAACTTCAAACAATCGAAACGACCTGGAAATTTCCCAAAAAAATGAATCTAAAAGCCTACTACATAGAAAAAGTTCAAGTGGCCTTTAAACTTACTGCACTATCTGAATCATAATGGAAATCTTAATCCTGCTAGAGCTTGGCAAAATGCATTTTAGGTGCACACAGGTGACACGCAAACTGTTGAGTGCCTCTTTATTTAGTCATAGCTCCCTTGTCCCTGTTTTGATAACATGCTTCATGCCCAATCCGTTACTTCCAAAATAATCAAATTATCAGACATCTGTTCACCATAGCATGTCTCTGATGCAAGATGAGATAGATGTGGTCATAATTTTTCTGCTGATTCTTTGTGCCAATAGTATGCCCTCTTGTCCTATGGTTTTGTTTTTTCAGTTACTTATCTATATTTCTGATACAGCTTTTTGTTTGACAAATGTAGATAAGGGTACATCTAAAACACATTGGTTACCCAATAGCCAATGACGAGGTGTACCTTTCCGAGAATTTTTCTCCACGTTCGTCAAAGGGAACAAGAATCAACAGAGCAACCACGCTAGCTTGTTCATTGCCATCTTCAGATCCTGACAGTTGTGCTGACCTTGGGAACAATGATACAAACGAAGATACAGAAGCCGATGAGGAGTTCAGCATCGATCC] [+] EMBL AK073819 [CCGTCCTCTCCTCGCCCACCGCCGCCGCCGCCGCCGCCCATCCTCCTTCCTCTCCTCGGGCGCTGAACCGCCGAGCTGAGCAGCCGCCCCGCCGCCCCCTCCTCCGCCGCCACAAGCCCGATCGAGGGGTGTCTCGCCCGGGATATATATATATGGCGGCGGGGCCGGCGGGGATCGTGTGGCAGACGCCGGCGAACCCGCCGGAGCGGCAGGACTACATCTTCCGCGACGGTAGTAGCAACCCGCAGCCCGGCCTCCGTCTCGTCCCCAACGCGCGCATCTTTCTTTCTGCCCGCCAAACCCCCTCCCCGGAGGCCCCGGACTGACGCGGTTGGTTATTCCCCCCCCATTTTGCTTCGCAGGGCGGCGCTACGTGAGGCCCTACTACTTCGAGTTCATCTCCCATGTGAAAAACAGATGGGCTGGGAAGACCATTGTTGACCTCTTCACCGATGAGTTCAAGGGCCGGCCTCGTGAATATTATGTTCATGCAGTGAAGTGTGGGAGGCTTCAGGTGGATGACCAAATGGTTCACGCAGACTATGTTGTGCAATCATCACAAAAGATAAGCCATTTCTTGCACAGGCATGAACCTCCAGTTTTGGGTGGTGATATTACAATCCTTCAAAATGAAGCTGATGTTGTTACAGTTTGCAAACCTGCATCTGTTCCAGTTCATCCGTGTGGTCAATACCGCAAGAATACTGTTGTCGGTATTCTGCAAGCTGAACATGGATTGGTGCCCCTATTTCTATTTTGACAGCCGTGCATCGGCTAGATCGGTTAGTTTCAGGTCTCCTTATATTTGCTAAAAATGCTGACAAAGCTGAAAGTTTCAGGCAACAGATCGAAGCTAGTTTGCTGCAGAAAGAATATGTGGCCAAGGTTGTTGGGGTGTTTCCTGATGGTGAGCAAACTGTTAATGCAAATGTGCACTTCAACGCACGGGAAGGAAGGAGCACTGCAGAGGTTTGTGATGGTGATGGTAAAGCTCCAATTGGAAAACAAGCCTGCACCAAGTTTCAGAGGATCTGTACTGATGGAATCCACAGCATTGTCCTGTGCAAACCTGTGACTGGCCGGACTCATCAGGTCACACTACCTTATACACATCAACATTGATTTGCTCGTTCAAACTTCAAACAATCGAAACGACCTGGAAATTTCCCAAAAAAATGAATCTAAAAGCCTACTACATAGAAAAAGTTCAAGTGGCCTTTAAACTTACTGCACTATCTGAATCATAATGGAAATCTTAATCCTGCTAGAGCTTGGCAAAATGCATTTTAGGTGCACACAGGTGACACGCAAACTGTTGAGTGCCTCTTTATTTAGTCATAGCTCCCTTGTCCCTGTTTTGATAACATGCTTCATGCCCAATCCGTTACTTCCAAAATAATCAAATTATCAGACATCTGTTCACCATAGCATGTCTCTGATGCAAGATGAGATAGATGTGGTCATAATTTTTCTGCTGATTCTTTGTGCCAATAGTATGCCCTCTTGTCCTATGGTTTTGTTTTTTCAGTTACTTATCTATATTTCTGATACAGCTTTTTGTTTGACAAATGTAGATAAGGGTACATCTAAAACACATTGGTTACCCAATAGCCAATGACGAGGTGTACCTTTCCGAGAATTTTTCTCCACGTTCGTCAAAGGGAACAAGAATCAACAGAGCAACCACGCTAGCTTGTTCATTGCCATCTTCAGATCCTGACAGTTGTGCTGACCTTGGGAACAATGATACAAACGAAGATACAGAAGCCGATGAGGAGTTCAGCATCGATCC] consensusID : consensus_3596#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 333 fasta sequence [GGGCGCGNGGGATCGTGTGGCAGACGCGGCGAACCCGCAGNCNGCAGGACTACATCTTCCGCGACGGGCGCGCTACGTGAGGCCCTACTACTTCGAGTTCATCTCCCATGTGAAAAACAGATGGGCTGGGAAGACCATTGTTGACCTCTTCACCGATGAGTTCAAGGGCCGGCCTCGTGAATATTATGTTCATGCAGTGAAGTGTGGGAGGCTTCAGGTGGATGACCAAATGGTTCACGCAGACTATGTTGTGCAATCATCACAAAAGATAAGCCATTTCTTGCACAGGCATGAACCTCCAGTTTTGGGTGGTGATATTACAATCCTTCAAAA] [+] EMBL D42523 [GGGCGCGNGGGATCGTGTGGCAGACGCGGCGAACCCGCAGNCNGCAGGACTACATCTTCCGCGACGGGCGCGCTACGTGAGGCCCTACTACTTCGAGTTCATCTCCCATGTGAAAAACAGATGGGCTGGGAAGACCATTGTTGACCTCTTCACCGATGAGTTCAAGGGCCGGCCTCGTGAATATTATGTTCATGCAGTGAAGTGTGGGAGGCTTCAGGTGGATGACCAAATGGTTCACGCAGACTATGTTGTGCAATCATCACAAAAGATAAGCCATTTCTTGCACAGGCATGAACCTCCAGTTTTGGGTGGTGATATTACAATCCTTCAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3596#0 CCGTCCTCTCCTCGCCCACCGCCGCCGCCGCCGCCGCCCATCCTCCTTCCTCTCCTCGGG 60 consensus_3596#1 ------------------------------------------------------------ consensus_3596#0 CGCTGAACCGCCGAGCTGAGCAGCCGCCCCGCCGCCCCCTCCTCCGCCGCCACAAGCCCG 120 consensus_3596#1 ------------------------------------------------------------ consensus_3596#0 ATCGAGGGGTGTCTCGCCCGGGATATATATATATGGCGGCGGGGCCGGCGGGGATCGTGT 180 consensus_3596#1 ------------------------------------------------------------ consensus_3596#0 GGCAGACGCCGGCGAACCCGCCGGAGCGGCAGGACTACATCTTCCGCGACGGTAGTAGCA 240 consensus_3596#1 ------------------------------------------------------------ consensus_3596#0 ACCCGCAGCCCGGCCTCCGTCTCGTCCCCAACGCGCGCATCTTTCTTTCTGCCCGCCAAA 300 consensus_3596#1 ------------------------------------------------GGGCGCGNGGGA 12 ** ** * consensus_3596#0 CCCCCTCCCCGGAGGCCCCGGACTGACGCGGTTGGTTATTCCCCCCCCATTTTGCTTCGC 360 consensus_3596#1 TCGTGTGGC-AGACGCGGCGAACC--CGCAGNCNGCAGGACTAC----ATCTT-CCGCGA 64 * * * ** ** ** ** *** * * * * ** ** * ** consensus_3596#0 AGGGCGGCGCTACGTGAGGCCCTACTACTTCGAGTTCATCTCCCATGTGAAAAACAGATG 420 consensus_3596#1 CGGGCG-CGCTACGTGAGGCCCTACTACTTCGAGTTCATCTCCCATGTGAAAAACAGATG 123 ***** ***************************************************** consensus_3596#0 GGCTGGGAAGACCATTGTTGACCTCTTCACCGATGAGTTCAAGGGCCGGCCTCGTGAATA 480 consensus_3596#1 GGCTGGGAAGACCATTGTTGACCTCTTCACCGATGAGTTCAAGGGCCGGCCTCGTGAATA 183 ************************************************************ consensus_3596#0 TTATGTTCATGCAGTGAAGTGTGGGAGGCTTCAGGTGGATGACCAAATGGTTCACGCAGA 540 consensus_3596#1 TTATGTTCATGCAGTGAAGTGTGGGAGGCTTCAGGTGGATGACCAAATGGTTCACGCAGA 243 ************************************************************ consensus_3596#0 CTATGTTGTGCAATCATCACAAAAGATAAGCCATTTCTTGCACAGGCATGAACCTCCAGT 600 consensus_3596#1 CTATGTTGTGCAATCATCACAAAAGATAAGCCATTTCTTGCACAGGCATGAACCTCCAGT 303 ************************************************************ consensus_3596#0 TTTGGGTGGTGATATTACAATCCTTCAAAATGAAGCTGATGTTGTTACAGTTTGCAAACC 660 consensus_3596#1 TTTGGGTGGTGATATTACAATCCTTCAAAA------------------------------ 333 ****************************** consensus_3596#0 TGCATCTGTTCCAGTTCATCCGTGTGGTCAATACCGCAAGAATACTGTTGTCGGTATTCT 720 consensus_3596#1 ------------------------------------------------------------ consensus_3596#0 GCAAGCTGAACATGGATTGGTGCCCCTATTTCTATTTTGACAGCCGTGCATCGGCTAGAT 780 consensus_3596#1 ------------------------------------------------------------ consensus_3596#0 CGGTTAGTTTCAGGTCTCCTTATATTTGCTAAAAATGCTGACAAAGCTGAAAGTTTCAGG 840 consensus_3596#1 ------------------------------------------------------------ consensus_3596#0 CAACAGATCGAAGCTAGTTTGCTGCAGAAAGAATATGTGGCCAAGGTTGTTGGGGTGTTT 900 consensus_3596#1 ------------------------------------------------------------ consensus_3596#0 CCTGATGGTGAGCAAACTGTTAATGCAAATGTGCACTTCAACGCACGGGAAGGAAGGAGC 960 consensus_3596#1 ------------------------------------------------------------ consensus_3596#0 ACTGCAGAGGTTTGTGATGGTGATGGTAAAGCTCCAATTGGAAAACAAGCCTGCACCAAG 1020 consensus_3596#1 ------------------------------------------------------------ consensus_3596#0 TTTCAGAGGATCTGTACTGATGGAATCCACAGCATTGTCCTGTGCAAACCTGTGACTGGC 1080 consensus_3596#1 ------------------------------------------------------------ consensus_3596#0 CGGACTCATCAGGTCACACTACCTTATACACATCAACATTGATTTGCTCGTTCAAACTTC 1140 consensus_3596#1 ------------------------------------------------------------ consensus_3596#0 AAACAATCGAAACGACCTGGAAATTTCCCAAAAAAATGAATCTAAAAGCCTACTACATAG 1200 consensus_3596#1 ------------------------------------------------------------ consensus_3596#0 AAAAAGTTCAAGTGGCCTTTAAACTTACTGCACTATCTGAATCATAATGGAAATCTTAAT 1260 consensus_3596#1 ------------------------------------------------------------ consensus_3596#0 CCTGCTAGAGCTTGGCAAAATGCATTTTAGGTGCACACAGGTGACACGCAAACTGTTGAG 1320 consensus_3596#1 ------------------------------------------------------------ consensus_3596#0 TGCCTCTTTATTTAGTCATAGCTCCCTTGTCCCTGTTTTGATAACATGCTTCATGCCCAA 1380 consensus_3596#1 ------------------------------------------------------------ consensus_3596#0 TCCGTTACTTCCAAAATAATCAAATTATCAGACATCTGTTCACCATAGCATGTCTCTGAT 1440 consensus_3596#1 ------------------------------------------------------------ consensus_3596#0 GCAAGATGAGATAGATGTGGTCATAATTTTTCTGCTGATTCTTTGTGCCAATAGTATGCC 1500 consensus_3596#1 ------------------------------------------------------------ consensus_3596#0 CTCTTGTCCTATGGTTTTGTTTTTTCAGTTACTTATCTATATTTCTGATACAGCTTTTTG 1560 consensus_3596#1 ------------------------------------------------------------ consensus_3596#0 TTTGACAAATGTAGATAAGGGTACATCTAAAACACATTGGTTACCCAATAGCCAATGACG 1620 consensus_3596#1 ------------------------------------------------------------ consensus_3596#0 AGGTGTACCTTTCCGAGAATTTTTCTCCACGTTCGTCAAAGGGAACAAGAATCAACAGAG 1680 consensus_3596#1 ------------------------------------------------------------ consensus_3596#0 CAACCACGCTAGCTTGTTCATTGCCATCTTCAGATCCTGACAGTTGTGCTGACCTTGGGA 1740 consensus_3596#1 ------------------------------------------------------------ consensus_3596#0 ACAATGATACAAACGAAGATACAGAAGCCGATGAGGAGTTCAGCATCGATCC 1792 consensus_3596#1 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||