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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3597#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1185 fasta sequence
[GTGGGGAAAAGGTGGTGACTGTTAGTCCTGAGAAGGTTTCTGGTGCCAAGTCTACTGATGAAGGAGGTGGTTCAGACAAGAGCAAGGGAAGTGAGGTGGGTAAGAGTGTTTTGCAACCTGATGTGAAGAGGATCAGAACTGAGGCTGCCCATGGTGGCGGCAGCGGAAGCGGTGGGAGTGTATCGAAGGATGGAACCGGCGGGAAAATGCTGCGCCCGGGGTTCCCCAAGTGGCGATTTGAGAAGCCGGAGGTAAGGGCAGGGCGGGTTCTTGATGAGAAAGGTGGGGTCGAGACGAAGGTAAGCAGTTCCCAAAAGGTTAAGGACCATGCATCGAGTTCGGTTTATGAGAGAAGACGGCCAGAGCCACTGAAACCTGAGAAATCGACGCCATCGAAGACTAACCAAGAGGTTATAAGGGTACAAGGGAAAAGCGGTGTCTTAAAGATCCGTCCGAAGAACAATAAGGTGGCTAGTGAAACTGGTGATGGCAAGAACCTGCCGAAGAATGCTAAGGTGGATGGGGATACTGGTGATGGCAAAGTTCTGCCAAAGAAGACTACAGTGGAGGAAAATGGTGATGGAAAGATTTTGACCAAGAGTGGTGTTTTAAAGCTCCTCCCAAAGAACAATAAGGTGGCCAAGGAAACCAGTGATGGCAATCCTCGAAGCAAGAACACTAAGGTGGTTGGGGAAACCAGTGACGCCAAGATTCTGATGAAGAACAAGGCGAATAGGGAAAGTGGTGATGATAAGGCACCGAAGAACTGTACGGTGAATCTAGAAACTAGCGCTGGCAAGATTTTGTCCAGAAACACTAAGGAAGATTTGAAAACCAGCGATGTCTGTAGACAAGATAAGGAGAAAAGCGATGCAATTGATGTGTCCCAAAAACAGGGTGCAGATGGTGAGAAGAGAATCACAGAAAAACTAGTCTCCCCCATCCTATTGAGGAAAAGTGACCCAAGTGTAGTGGGAATTTCTTTGGGCCAGAAAATGAAGCAGCAAAATTCAAAGGCGCAACTGAAGATATCCTCACTAGGCCAACGTCAGCCTTCACTTAATTTGAAAGATGAGAAGAATAAGAAAAAAAGATTGCTTGATCATAAAATGTCACCAGAAAATTTGTCCAAGAAAGCAAAACCAAATGCCATTGATCAGGATACATCTCGTCCTTCTCTTGAGA]
[+] EMBL AK110935 [GTGGGGAAAAGGTGGTGACTGTTAGTCCTGAGAAGGTTTCTGGTGCCAAGTCTACTGATGAAGGAGGTGGTTCAGACAAGAGCAAGGGAAGTGAGGTGGGTAAGAGTGTTTTGCAACCTGATGTGAAGAGGATCAGAACTGAGGCTGCCCATGGTGGCGGCAGCGGAAGCGGTGGGAGTGTATCGAAGGATGGAACCGGCGGGAAAATGCTGCGCCCGGGGTTCCCCAAGTGGCGATTTGAGAAGCCGGAGGTAAGGGCAGGGCGGGTTCTTGATGAGAAAGGTGGGGTCGAGACGAAGGTAAGCAGTTCCCAAAAGGTTAAGGACCATGCATCGAGTTCGGTTTATGAGAGAAGACGGCCAGAGCCACTGAAACCTGAGAAATCGACGCCATCGAAGACTAACCAAGAGGTTATAAGGGTACAAGGGAAAAGCGGTGTCTTAAAGATCCGTCCGAAGAACAATAAGGTGGCTAGTGAAACTGGTGATGGCAAGAACCTGCCGAAGAATGCTAAGGTGGATGGGGATACTGGTGATGGCAAAGTTCTGCCAAAGAAGACTACAGTGGAGGAAAATGGTGATGGAAAGATTTTGACCAAGAGTGGTGTTTTAAAGCTCCTCCCAAAGAACAATAAGGTGGCCAAGGAAACCAGTGATGGCAATCCTCGAAGCAAGAACACTAAGGTGGTTGGGGAAACCAGTGACGCCAAGATTCTGATGAAGAACAAGGCGAATAGGGAAAGTGGTGATGATAAGGCACCGAAGAACTGTACGGTGAATCTAGAAACTAGCGCTGGCAAGATTTTGTCCAGAAACACTAAGGAAGATTTGAAAACCAGCGATGTCTGTAGACAAGATAAGGAGAAAAGCGATGCAATTGATGTGTCCCAAAAACAGGGTGCAGATGGTGAGAAGAGAATCACAGAAAAACTAGTCTCCCCCATCCTATTGAGGAAAAGTGACCCAAGTGTAGTGGGAATTTCTTTGGGCCAGAAAATGAAGCAGCAAAATTCAAAGGCGCAACTGAAGATATCCTCACTAGGCCAACGTCAGCCTTCACTTAATTTGAAAGATGAGAAGAATAAGAAAAAAAGATTGCTTGATCATAAAATGTCACCAGAAAATTTGTCCAAGAAAGCAAAACCAAATGCCATTGATCAGGATACATCTCGTCCTTCTCTTGAGA]
consensusID : consensus_3597#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 812 fasta sequence
[ACGCCCCTCTAAACTTAATTTGAAAGATGAGAAGAATAAGAAAAAAAGATTGCTTGATCATAAAATGTCACCAGAAAATTTGTCCAAGAAAGCAAAACCAAATGCCATTGATCAGGATACATCTCGTCCTTCTCTTGAGAAGCATGGAATAAAGAAGGAAAGGAAAGGGCCTCGTTACACAATGAAGCAGAAGCTCAGGGGTCAGATAAAGGACATTCTTTTAAACAATGGATGGAAAATTGATCTAAGGCGCAGGAAAAACAAAGATTATGAAGATTCTGTCTATGTTTCTCCACAAGGAAATGGCTATTGGTCAATCACTAAGGCTTATGCTGTGTTCCAAGAGCAGTCTAAAAGTGGGAAGCGTACAGGTAAATCATCTAAGCATAAAGCAGGTGTTGCAGATGCTGCCTGTAATGCCATATCAGAAAATGATTTAGCAATGCTACAGAGGAATGTGGTGAAAAGGAGGACCAAGAAAGAACTTGGTGCTTCTAAAAAGAAGTATGAGGACAGCAGCAGCAGGAACTCCAAAGACAACAATGCTGGTAGAAGTTCTGGAAACAAGCATCAAAGCAGTGGAGTTAGGGGATGTGCGCTTCTTGTCCGTGGTAGTACTCATAGCATGGAAGGCAATGTGGACGGCTATGTTCCTTATCGATGGAAGCGGACAGTTTTATCATGGATGATAGATATGGGGGTTGTTTCTGAAGATGCAAAGGTCAAATATATGAATAAGAAGGGCACACGGGCAAGGTTGGAGGGTAGAATTACTAGGGATGGCATTCACTGCGGATGTTGCTCTAAGATTC]
[+] EMBL CB624178 [ACGCCCCTCTAAACTTAATTTGAAAGATGAGAAGAATAAGAAAAAAAGATTGCTTGATCATAAAATGTCACCAGAAAATTTGTCCAAGAAAGCAAAACCAAATGCCATTGATCAGGATACATCTCGTCCTTCTCTTGAGAAGCATGGAATAAAGAAGGAAAGGAAAGGGCCTCGTTACACAATGAAGCAGAAGCTCAGGGGTCAGATAAAGGACATTCTTTTAAACAATGGATGGAAAATTGATCTAAGGCGCAGGAAAAACAAAGATTATGAAGATTCTGTCTATGTTTCTCCACAAGGAAATGGCTATTGGTCAATCACTAAGGCTTATGCTGTGTTCCAAGAGCAGTCTAAAAGTGGGAAGCGTACAGGTAAATCATCTAAGCATAAAGCAGGTGTTGCAGATGCTGCCTGTAATGCCATATCAGAAAATGATTTAGCAATGCTACAGAGGAATGTGGTGAAAAGGAGGACCAAGAAAGAACTTGGTGCTTCTAAAAAGAAGTATGAGGACAGCAGCAGCAGGAACTCCAAAGACAACAATGCTGGTAGAAGTTCTGGAAACAAGCATCAAAGCAGTGGAGTTAGGGGATGTGCGCTTCTTGTCCGTGGTAGTACTCATAGCATGGAAGGCAATGTGGACGGCTATGTTCCTTATCGATGGAAGCGGACAGTTTTATCATGGATGATAGATATGGGGGTTGTTTCTGAAGATGCAAAGGTCAAATATATGAATAAGAAGGGCACACGGGCAAGGTTGGAGGGTAGAATTACTAGGGATGGCATTCACTGCGGATGTTGCTCTAAGATTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3597#0 GTGGGGAAAAGGTGGTGACTGTTAGTCCTGAGAAGGTTTCTGGTGCCAAGTCTACTGATG 60
consensus_3597#1 ------------------------------------------------------------
consensus_3597#0 AAGGAGGTGGTTCAGACAAGAGCAAGGGAAGTGAGGTGGGTAAGAGTGTTTTGCAACCTG 120
consensus_3597#1 ------------------------------------------------------------
consensus_3597#0 ATGTGAAGAGGATCAGAACTGAGGCTGCCCATGGTGGCGGCAGCGGAAGCGGTGGGAGTG 180
consensus_3597#1 ------------------------------------------------------------
consensus_3597#0 TATCGAAGGATGGAACCGGCGGGAAAATGCTGCGCCCGGGGTTCCCCAAGTGGCGATTTG 240
consensus_3597#1 ------------------------------------------------------------
consensus_3597#0 AGAAGCCGGAGGTAAGGGCAGGGCGGGTTCTTGATGAGAAAGGTGGGGTCGAGACGAAGG 300
consensus_3597#1 --------------ACGCCCCTCTAAA--CTTAATTTGAAAGATGAGAAGAATAAGAAAA 44
* * * *** ** ***** ** * * * ***
consensus_3597#0 TAAGCAGTTCCCAAAAGGTTAAGGACCATGCATCGAGTTCGGTTTATGAGAGAAGACGGC 360
consensus_3597#1 AAAG--ATTGCTTGATCATAAAATGTCAC-CAGAAAATTTGTCCAAGAAAGCAAAAC--C 99
*** ** * * * ** ** ** * ** * * * ** ** *
consensus_3597#0 CAGAGCCACTGAAACCTGAGAAATCGACGCCATCGAAGACTAACCAAGAGGTTATAAGGG 420
consensus_3597#1 AAATGCCATTGAT-CAGGATACATCTCGTCCTTCTCTTGAGAAGCATGGAATAAAGAAGG 158
* **** *** * ** * *** ** ** ** ** * * * * **
consensus_3597#0 TACAAGGGAAAAGCGGTGTCTTAAAGATCCGTCCGAAGAACAATAAGGTGGCTAGTGAAA 480
consensus_3597#1 AA--AGGAAAGGGCCTCGTTACACA-ATGAAGCAGAAGCTCAGGGGTCAGATAAAGGACA 215
* *** ** ** ** * * ** * **** ** * * ** *
consensus_3597#0 CTGGTGATGGCAAGAACCTGCCGAAGAATGCTAAGGTGGATGGGGATACTGGTGATGGCA 540
consensus_3597#1 TTCTTTTAAACAATGGATGGAAAATTGAT-CTAAGGCGCA-GGAAAAACAAAGATTATGA 273
* * *** * * ** ****** * * ** * ** * *
consensus_3597#0 AAGTTCTGCCAAAGAAGACTACAGTGGAGGAAAATGGTGATGGAAAGATTTTGACCAAGA 600
consensus_3597#1 AGATTCTGTCTATG----TTTCTCCACAAGGAAATGGCTATTGGTCAATC---ACTAAGG 326
* ***** * * * * * * * ****** ** * ** ** ***
consensus_3597#0 GTGGTGTTTTAAAGCTCCTCCCAAAGAACAATAAGGTGGCCAAGGAAACCAGTGATGGCA 660
consensus_3597#1 CTTATGCTGTG------TTCCAAGAGCAGTCTAAAAGTGGGAAGCGTACAGGTAA----- 375
* ** * * *** * ** * *** * *** ** ** *
consensus_3597#0 ATCCTCGAAGCAAGAACACTAAGGTGGTTGGGGAAACCAGTGACGCCA----AGATTCTG 716
consensus_3597#1 ATCATCTAAGCATAAA-GCAGGTGTTGCAGATGCTGCCTGTAATGCCATATCAGAAAATG 434
*** ** ***** ** * ** * * * ** ** * **** *** **
consensus_3597#0 ATGAAGAACAAGGCGAATAGGGAAAGTGGTGATGATAAGGCACCGAAGAACTGTACGGTG 776
consensus_3597#1 ATTTAG--CAATGCTACAGAGGAATGTGGTGAAAAGGAGG-ACCAAGAAAGAACTTGGTG 491
** ** *** ** * **** ******* * *** *** * ** ****
consensus_3597#0 AATCTAGAAACTAGCGCTGGCAAGATTTTGTCCAGAAACACTAAGGAAGATTTGAAAACC 836
consensus_3597#1 CTTCTAAAAAGAAGTA-TGAGGACAGCAGCAGCAGGAACTCCAAAGACAAC---AATGCT 547
**** *** ** ** * * *** *** * ** ** * ** *
consensus_3597#0 AGCGATGTCTGTAGACAAGATAAGGAGAAAAGCGATGCAATTGATGTGTCCCAAAAACAG 896
consensus_3597#1 GGTAGAAGTTCTGGA---AACAAGCATCAAAGCAGTGGAGTTAGGGGATGTGCGCTTCTT 604
* * * ** * *** * ***** ** * ** * * *
consensus_3597#0 GGTGCAGATGGTGAGAAGAGAATCACAGAAAAACTAGTCTCCCCCATCC--TATTGAGGA 954
consensus_3597#1 GTCCGTGGTAGTACTCATAGCATGGAAGGCAATGTGGACGGCTATGTTCCTTATCGATGG 664
* * * ** * ** ** ** ** * * * * * * *** ** *
consensus_3597#0 AAAGTGACCCAAGTGTAGTGGGAATTT--CTTTGGGCCAGAAAATGAAGCAGCAAAATTC 1012
consensus_3597#1 AAGCGGACAGTTTTATCATGGATGATAGATATGGGGGTTGTTTCTGAAGATGCAAAGGTC 724
** *** * * *** * * *** * ***** ***** **
consensus_3597#0 AAAGGCGCAACTGAAGATATCCTCACTAGGCCAACGTCAGCCTTCACTTAATTTGAAAGA 1072
consensus_3597#1 AAATATATGAATAAGAAGGGC---ACACGGGCAAGGT----------------TGGAGGG 765
*** * * * * * ** ** *** ** ** * *
consensus_3597#0 TGAGAAGAATAAGAAAAAAAGATTGCTTGATCATAAAATGTCACCAGAAAATTTGTCCAA 1132
consensus_3597#1 TAGAATTACTAGG-------GATGGCATTCACTGCGGATGTTGCTCTAAGATTC------ 812
* * * ** * *** ** * * **** * ** ***
consensus_3597#0 GAAAGCAAAACCAAATGCCATTGATCAGGATACATCTCGTCCTTCTCTTGAGA 1185
consensus_3597#1 -----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||