These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_36#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 388 fasta sequence [GGTAATCCGAATCAACGGGAGGAGACATTCGCGGACAGCATCGAGCTCTTCGAGAAGGCAGCCTTCTGGATGGACAACCTTTCCGGCTTCCCTATCTCTACCGTATGCTGCCTAGGAATGAACTGAAAATATGTGTAATAATAAGTTGGCATCAGGCCCGATTATCAGCTACTTCCTCCGTTTCATAATGTAAGTCTTTCTAGCTTGTCCATATTAATATAGATGTTAATAAATCTAGGCATATATGTGTCTAGATTCATTAACATCTATACGAATATGATGCTAGAAAGTCTTATATTATGAAACGGAGGGACTAATTAATACATCCTCTGTTTCACTTATTTTTTTTATTTTGAATAAATTAATATATAGATTCACGTAAAAAAAA] [+] EMBL BI811161 [GGTAATCCGAATCAACGGGAGGAGACATTCGCGGACAGCATCGAGCTCTTCGAGAAGGCAGCCTTCTGGATGGACAACCTTTCCGGCTTCCCTATCTCTACCGTATGCTGCCTAGGAATGAACTGAAAATATGTGTAATAATAAGTTGGCATCAGGCCCGATTATCAGCTACTTCCTCCGTTTCATAATGTAAGTCTTTCTAGCTTGTCCATATTAATATAGATGTTAATAAATCTAGGCATATATGTGTCTAGATTCATTAACATCTATACGAATATGATGCTAGAAAGTCTTATATTATGAAACGGAGGGACTAATTAATACATCCTCTGTTTCACTTATTTTTTTTATTTTGAATAAATTAATATATAGATTCACGTAAAAAAAA] consensusID : consensus_36#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 345 fasta sequence [TGAAAATATGTGTAATAATAAGTGGGCATCAGGCCCGATTATCAGCTACTTCCCCCGTTTCATAATATAAGTCTTTCAAGCATTGTCCCCATTAATATAGATGTTAATAAATTTAGGCATATATGTGTTTAGATTCATTAACATCTATACGAATATGAGCAATGTTAGAAAGTTTTATATAATGAAAGGGAGGGCCAAATTAAAAAATCCTCTGTTTCCCATTATTTTTTTTATTTTGAATAAATTAATATATAAATTCAGGTATGTGCTTGGTATATTTGTTTAAAATTCATATAAATACTAGTGAATTTAGATGAGGGATGAAGAGCCCAAAAAAAAAAAAAA] [-] EMBL CF294988 [TGAAAATATGTGTAATAATAAGTGGGCATCAGGCCCGATTATCAGCTACTTCCCCCGTTTCATAATATAAGTCTTTCAAGCATTGTCCCCATTAATATAGATGTTAATAAATTTAGGCATATATGTGTTTAGATTCATTAACATCTATACGAATATGAGCAATGTTAGAAAGTTTTATATAATGAAAGGGAGGGCCAAATTAAAAAATCCTCTGTTTCCCATTATTTTTTTTATTTTGAATAAATTAATATATAAATTCAGGTATGTGCTTGGTATATTTGTTTAAAATTCATATAAATACTAGTGAATTTAGATGAGGGATGAAGAGCCCAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_36#0 GGTAATCCGAATCAACGGGAGGAGACATTCGCGGACAGCATCGAGCTCTTCGAGAAGGCA 60 consensus_36#1 ------------------------------------------------------------ consensus_36#0 GCCTTCTGGATGGACAACCTTTCCGGCTTCCCTATCTCTACCGTATGCTGCCTAGGAATG 120 consensus_36#1 ------------------------------------------------------------ consensus_36#0 AACTGAAAATATGTGTAATAATAAGTTGGCATCAGGCCCGATTATCAGCTACTTCCTCCG 180 consensus_36#1 ---TGAAAATATGTGTAATAATAAGTGGGCATCAGGCCCGATTATCAGCTACTTCCCCCG 57 *********************** ***************************** *** consensus_36#0 TTTCATAATGTAAGTCTTTCTAGC-TTGTCCATATTAATATAGATGTTAATAAATCTAGG 239 consensus_36#1 TTTCATAATATAAGTCTTTCAAGCATTGTCCCCATTAATATAGATGTTAATAAATTTAGG 117 ********* ********** *** ****** ********************** **** consensus_36#0 CATATATGTGTCTAGATTCATTAACATCTATACGAATATGA----TGCTAGAAAGTCTTA 295 consensus_36#1 CATATATGTGTTTAGATTCATTAACATCTATACGAATATGAGCAATGTTAGAAAGTTTTA 177 *********** ***************************** ** ******** *** consensus_36#0 TATTATGAAACGGAGGGACTAATTAATACATCCTCTGTTTCAC-TTATTTTTTTTATTTT 354 consensus_36#1 TATAATGAAAGGGAGGGCCAAATTAAAAAATCCTCTGTTTCCCATTATTTTTTTTATTTT 237 *** ****** ****** * ****** * ************ * **************** consensus_36#0 GAATAAATTAATATATAGATTCACGTAAAAAAAA-------------------------- 388 consensus_36#1 GAATAAATTAATATATAAATTCAGGTATGTGCTTGGTATATTTGTTTAAAATTCATATAA 297 ***************** ***** *** consensus_36#0 ------------------------------------------------ consensus_36#1 ATACTAGTGAATTTAGATGAGGGATGAAGAGCCCAAAAAAAAAAAAAA 345 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||