These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3604#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 507 fasta sequence [ATGCGGTGGCCGGCAAAATGTAGGTGGAATGACGGATGAGAAATTTCCCGACCGCCTCGGGGCTTTTCGCGCGTCGCTGCTGATCCGATGATGATGAACCATTGAAGAGAAGGTGTGGGATGGAATTTTTTTTTTTTTGAAAAAAAAAAAAGTTCTTCCCCCTGACAACAATTTGTGCGGTAAATTCATCGGCGCACCGGAGGATGTATTTTCGTAGTCCACCCCTTTTGTATACCGGCTTGTTTTCTCTCAGTGAAAATTGTGGGAGAAAACAGCTTGGAAGTTGCATGACAGGACTTAGATCAAATTTGTGAGGGTGCACTTCCAAGCCATTTTGGCCCTTCAGTTCATCTGATTTACTAATTTTAATTTCAGATTCCGGCTGTTAGTTGACATTTTATTGTCTGCTGCTTGCTTCTGTTTGTTGTTGGAAGCAGCCAATGTTCCCCCCTTACTAAACATCTTCAGGGAGCAAATTTGGCCCCCTTTTACTGAGCAAAAAAAAAA] [+] EMBL BM419828 [ATGCGGTGGCCGGCAAAATGTAGGTGGAATGACGGATGAGAAATTTCCCGACCGCCTCGGGGCTTTTCGCGCGTCGCTGCTGATCCGATGATGATGAACCATTGAAGAGAAGGTGTGGGATGGAATTTTTTTTTTTTTGAAAAAAAAAAAAGTTCTTCCCCCTGACAACAATTTGTGCGGTAAATTCATCGGCGCACCGGAGGATGTATTTTCGTAGTCCACCCCTTTTGTATACCGGCTTGTTTTCTCTCAGTGAAAATTGTGGGAGAAAACAGCTTGGAAGTTGCATGACAGGACTTAGATCAAATTTGTGAGGGTGCACTTCCAAGCCATTTTGGCCCTTCAGTTCATCTGATTTACTAATTTTAATTTCAGATTCCGGCTGTTAGTTGACATTTTATTGTCTGCTGCTTGCTTCTGTTTGTTGTTGGAAGCAGCCAATGTTCCCCCCTTACTAAACATCTTCAGGGAGCAAATTTGGCCCCCTTTTACTGAGCAAAAAAAAAA] consensusID : consensus_3604#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 346 fasta sequence [CTTTTTTTTTTTTTGCGCGGTAAANTCATCGGCGCACCGGAGGATGTGTTTTCGTAGNCCACCCCTTTTGTANACCGGCTTGTTTTCTCTCAGTGAAAANTGTGGGAGAAAACAGCTTGGAAGTTGCCTGACAGGACTTAGANCAAANTTGTGAGGGTGCACTTCCAANCCATTTTGGCCCTTCAGTTCATCTGATTTACTAANTTTAANTTCAGANTCCGGCTGTTAGTTGACANTTTATTGTCTGCTGCTTGCTTCTGTTCTTTGTTGTTGGAANCAGCCAATGTTCCCCCCTTACTAAANATCTTCAGGGAGCAAANTTGGCCCCCTTTTACTGANCAAAAAA] [+] EMBL AU070428 [CTTTTTTTTTTTTTGCGCGGTAAANTCATCGGCGCACCGGAGGATGTGTTTTCGTAGNCCACCCCTTTTGTANACCGGCTTGTTTTCTCTCAGTGAAAANTGTGGGAGAAAACAGCTTGGAAGTTGCCTGACAGGACTTAGANCAAANTTGTGAGGGTGCACTTCCAANCCATTTTGGCCCTTCAGTTCATCTGATTTACTAANTTTAANTTCAGANTCCGGCTGTTAGTTGACANTTTATTGTCTGCTGCTTGCTTCTGTTCTTTGTTGTTGGAANCAGCCAATGTTCCCCCCTTACTAAANATCTTCAGGGAGCAAANTTGGCCCCCTTTTACTGANCAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3604#0 ATGCGGTGGCCGGCAAAATGTAGGTGGAATGACGGATGAGAAATTTCCCGACCGCCTCGG 60 consensus_3604#1 ------------------------------------------------------------ consensus_3604#0 GGCTTTTCGCGCGTCGCTGCTGATCCGATGATGATGAACCATTGAAGAGAAGGTGTGGGA 120 consensus_3604#1 ------------------------------------------------------------ consensus_3604#0 TGGAATTTTTTTTTTTTTGAAAAAAAAAAAAGTTCTTCCCCCTGACAACAATTTGTGCGG 180 consensus_3604#1 ----------------------------------------CTTTTTTTTTTTTTGCGCGG 20 * * **** **** consensus_3604#0 TAAATTCATCGGCGCACCGGAGGATGTATTTTCGTAGTCCACCCCTTTTGTATACCGGCT 240 consensus_3604#1 TAAANTCATCGGCGCACCGGAGGATGTGTTTTCGTAGNCCACCCCTTTTGTANACCGGCT 80 **** ********************** ********* ************** ******* consensus_3604#0 TGTTTTCTCTCAGTGAAAATTGTGGGAGAAAACAGCTTGGAAGTTGCATGACAGGACTTA 300 consensus_3604#1 TGTTTTCTCTCAGTGAAAANTGTGGGAGAAAACAGCTTGGAAGTTGCCTGACAGGACTTA 140 ******************* *************************** ************ consensus_3604#0 GATCAAATTTGTGAGGGTGCACTTCCAAGCCATTTTGGCCCTTCAGTTCATCTGATTTAC 360 consensus_3604#1 GANCAAANTTGTGAGGGTGCACTTCCAANCCATTTTGGCCCTTCAGTTCATCTGATTTAC 200 ** **** ******************** ******************************* consensus_3604#0 TAATTTTAATTTCAGATTCCGGCTGTTAGTTGACATTTTATTGTCTGCTGCTTGCTTCTG 420 consensus_3604#1 TAANTTTAANTTCAGANTCCGGCTGTTAGTTGACANTTTATTGTCTGCTGCTTGCTTCTG 260 *** ***** ****** ****************** ************************ consensus_3604#0 TT---TGTTGTTGGAAGCAGCCAATGTTCCCCCCTTACTAAACATCTTCAGGGAGCAAAT 477 consensus_3604#1 TTCTTTGTTGTTGGAANCAGCCAATGTTCCCCCCTTACTAAANATCTTCAGGGAGCAAAN 320 ** *********** ************************* **************** consensus_3604#0 TTGGCCCCCTTTTACTGAGCAAAAAAAAAA 507 consensus_3604#1 TTGGCCCCCTTTTACTGANCAAAAAA---- 346 ****************** ******* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||