These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3609#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1250 fasta sequence [TGTGTTCATGAGTGTGAGAGTGTTCCTAGGCTAAGCCAACATTTGGTATCAGAGCCTGGAGATGAAGATCGGAGATGGCTCGACCTCCGATGCCTCCGTGGAGCGCGTCGTGCCCAATTCCAGCGTCATGGAGCTGCTGCTGCTAACCAGGGCCAACTACCATCAGTGGGCCTTGGTTATGCGGGTGAGCTTGGAGGCGCTGGAGTTGTGGGACGCGGTGGAAGCGGTCACCAAGGATAGGCGGGCGTTGGCCACCATCTTGCACGCGGTACCACCGAAGATGAAGGTCGGGCTCGCCGTGAAGACGTCGGCGAAGGAAGCGTGGGACTCGGTGAAGAAGATGCGAGCCGGCGACGACCGCGTGAAGTCAGCGAGTGTGCAACGCTTCATGAAGGAGTTTGAGAACATGATGTTCCGCGACGGGGAGACCGTCGGCGACTTTGCGATGCGCATCAACGGGCCCACCGCGAGCCTGCGTGACCTTGGGGAGGAGATAGAAGACAGCCACGTGGTGAAGAAGGTCCTGCGCGTGGTCCCGAAGAGGTTGAAGCAAGTCACGGTGGCAATTGAGATGCTCGAGGACATGGATGATATGTCCGTTGAGGAGCTCGTCGGGCGGCTGCAAGTGGCGGTGGACGCCGACGTTGAAGATCAAACGGAGGTCCATGGCGGGCAGCTACTTCTCGCTGAGGAGCAGTGGGAGGCTAGCAGGCGTCAACGCGGCAGCAAGCAGCACACAGGCAGTGGGGTGCGCCATGACAATGGCAAGAAAGGCGACGACCATGGTGGAGACTGCGAGGATGACGATGACGACGGCAGCAGCACGAGCTCAGGGCTGGATCGACAGGATCCCGTCGAATGTGCTCCACTTGATAGGATCCCGTCGAATGCGCTCCATTCGATTGCCTGGCTTGTCAAACTAAGCTAGTTCAACAGGTCCCTATTTTTGCAAATAAATCCGGATACCAACTTTTGTTTTTGTGACTTTTTATTAAAATAATAATATTTCTAAGAAAATGCCAGCGCACACCACGAGTGTGTTTGGGTCTACATGCATGTAGTAGAGTACGCGGACATCTGATGTTTGATAAAAGATGTCCCTCCTTTTTGTGGCTTTCTCTGTTTTTTTCACTGGAACAAATAAGATGTCCCTCCTTTTTTTAATCACTTTCAACTACGTGGTACGACACATTGAAGGTCCAGTGTAGTGCCTCTTTAAAACCCACCTATCAGGCCTCTTGAAGCCTATC] [+] EMBL AK100859 [TGTGTTCATGAGTGTGAGAGTGTTCCTAGGCTAAGCCAACATTTGGTATCAGAGCCTGGAGATGAAGATCGGAGATGGCTCGACCTCCGATGCCTCCGTGGAGCGCGTCGTGCCCAATTCCAGCGTCATGGAGCTGCTGCTGCTAACCAGGGCCAACTACCATCAGTGGGCCTTGGTTATGCGGGTGAGCTTGGAGGCGCTGGAGTTGTGGGACGCGGTGGAAGCGGTCACCAAGGATAGGCGGGCGTTGGCCACCATCTTGCACGCGGTACCACCGAAGATGAAGGTCGGGCTCGCCGTGAAGACGTCGGCGAAGGAAGCGTGGGACTCGGTGAAGAAGATGCGAGCCGGCGACGACCGCGTGAAGTCAGCGAGTGTGCAACGCTTCATGAAGGAGTTTGAGAACATGATGTTCCGCGACGGGGAGACCGTCGGCGACTTTGCGATGCGCATCAACGGGCCCACCGCGAGCCTGCGTGACCTTGGGGAGGAGATAGAAGACAGCCACGTGGTGAAGAAGGTCCTGCGCGTGGTCCCGAAGAGGTTGAAGCAAGTCACGGTGGCAATTGAGATGCTCGAGGACATGGATGATATGTCCGTTGAGGAGCTCGTCGGGCGGCTGCAAGTGGCGGTGGACGCCGACGTTGAAGATCAAACGGAGGTCCATGGCGGGCAGCTACTTCTCGCTGAGGAGCAGTGGGAGGCTAGCAGGCGTCAACGCGGCAGCAAGCAGCACACAGGCAGTGGGGTGCGCCATGACAATGGCAAGAAAGGCGACGACCATGGTGGAGACTGCGAGGATGACGATGACGACGGCAGCAGCACGAGCTCAGGGCTGGATCGACAGGATCCCGTCGAATGTGCTCCACTTGATAGGATCCCGTCGAATGCGCTCCATTCGATTGCCTGGCTTGTCAAACTAAGCTAGTTCAACAGGTCCCTATTTTTGCAAATAAATCCGGATACCAACTTTTGTTTTTGTGACTTTTTATTAAAATAATAATATTTCTAAGAAAATGCCAGCGCACACCACGAGTGTGTTTGGGTCTACATGCATGTAGTAGAGTACGCGGACATCTGATGTTTGATAAAAGATGTCCCTCCTTTTTGTGGCTTTCTCTGTTTTTTTCACTGGAACAAATAAGATGTCCCTCCTTTTTTTAATCACTTTCAACTACGTGGTACGACACATTGAAGGTCCAGTGTAGTGCCTCTTTAAAACCCACCTATCAGGCCTCTTGAAGCCTATC] consensusID : consensus_3609#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 768 fasta sequence [AGGCGGCTCTCCAACGACCGCGCCAAGGATCGGCGGGCGTTGGCCGCCATCTTGCGTGCAGTGCCATCGGAGATGAAGGCCGGGCTTGCCGTGAAGACGTCGGCGAAGGAGGCGTGGGACTCGGTGAAGAAGATGTGAGCCGGCGACGATCGCGTGAAATAGGCGAGCGTGCAACGCCTCATGAAGGAGTTTGAGAACATGGCGTTCCGCGACGGGGAGACCGTTGGTGACTTTGTGATGCGCATCAACGGGCTCACCGCAAGCCTGCGCGACCTCGGGGAGGAGATGGAAGACAGTCGCGTGGTGAAGAAGGTCGCGCGTGGTCCCGAAGAGGTTGAAGCAAGTCGCGGTTGCGATTGAGATGCTCGCGGACATGGATGTTATGTCCGTCGAGGAGCTCGTCGGACGCCTGCAAGTGGCGGAGGACGCCGACGCTGAAGATCACGTGGAGGCCCATGGCGAGCAGCTACTTCTCACCGAGGAGCAGTGGGAGGCACGTCGGCGCCAGCGTCGCGAAAAGGAGCGTGTGCGTGAGGGCGGCGCCAAGGACGACGGCCGAAACAGCGACAATGACGACGGCGGCAGCAGTGTGAGCTCCGAGGTAAACCGGCGTCCGCGCCGTCCAGGAGGGAAGTGCTACAATTGTGGTGTTCGTGGCCATCTCTCCCGGGATTGCCGCAAGCCAAGGAAGGAGGAGGCGCTCCTCGCCTCTGCCGACGACGAGCCGACGCTCCTGTAGGTCAGGTTTAGGGGGGTGATTGTTAGGAA] [+] EMBL CB626539 [AGGCGGCTCTCCAACGACCGCGCCAAGGATCGGCGGGCGTTGGCCGCCATCTTGCGTGCAGTGCCATCGGAGATGAAGGCCGGGCTTGCCGTGAAGACGTCGGCGAAGGAGGCGTGGGACTCGGTGAAGAAGATGTGAGCCGGCGACGATCGCGTGAAATAGGCGAGCGTGCAACGCCTCATGAAGGAGTTTGAGAACATGGCGTTCCGCGACGGGGAGACCGTTGGTGACTTTGTGATGCGCATCAACGGGCTCACCGCAAGCCTGCGCGACCTCGGGGAGGAGATGGAAGACAGTCGCGTGGTGAAGAAGGTCGCGCGTGGTCCCGAAGAGGTTGAAGCAAGTCGCGGTTGCGATTGAGATGCTCGCGGACATGGATGTTATGTCCGTCGAGGAGCTCGTCGGACGCCTGCAAGTGGCGGAGGACGCCGACGCTGAAGATCACGTGGAGGCCCATGGCGAGCAGCTACTTCTCACCGAGGAGCAGTGGGAGGCACGTCGGCGCCAGCGTCGCGAAAAGGAGCGTGTGCGTGAGGGCGGCGCCAAGGACGACGGCCGAAACAGCGACAATGACGACGGCGGCAGCAGTGTGAGCTCCGAGGTAAACCGGCGTCCGCGCCGTCCAGGAGGGAAGTGCTACAATTGTGGTGTTCGTGGCCATCTCTCCCGGGATTGCCGCAAGCCAAGGAAGGAGGAGGCGCTCCTCGCCTCTGCCGACGACGAGCCGACGCTCCTGTAGGTCAGGTTTAGGGGGGTGATTGTTAGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3609#0 TGTGTTCATGAGTGTGAGAGTGTTCCTAGGCTAAGCCAACATTTGGTATCAGAGCCTGGA 60 consensus_3609#1 ------------------------------------------------------------ consensus_3609#0 GATGAAGATCGGAGATGGCTCGACCTCCGATGCCTCCGTGGAGCGCGTCGTGCCCAATTC 120 consensus_3609#1 ------------------------------------------------------------ consensus_3609#0 CAGCGTCATGGAGCTGCTGCTGCTAACCAGGGCCAACTACCATCAGTGGGCCTTGGTTAT 180 consensus_3609#1 ------------------------------------------------------------ consensus_3609#0 GCGGGTGAGCTTGGAGGCGCTGGAGTTGTGGGACGCGGTGGAAGCGGTCACCAAGGATAG 240 consensus_3609#1 ---------------------------AGGCGGCTCTCCAACGACCG-CGCCAAGGATCG 32 * * * * * * * ******** * consensus_3609#0 GCGGGCGTTGGCCACCATCTTGCACGCGGTACCACCGAAGATGAAGGTCGGGCTCGCCGT 300 consensus_3609#1 GCGGGCGTTGGCCGCCATCTTGCGTGCAGTGCCATCGGAGATGAAGGCCGGGCTTGCCGT 92 ************* ********* ** ** *** ** ********* ****** ***** consensus_3609#0 GAAGACGTCGGCGAAGGAAGCGTGGGACTCGGTGAAGAAGATGCGAGCCGGCGACGACCG 360 consensus_3609#1 GAAGACGTCGGCGAAGGAGGCGTGGGACTCGGTGAAGAAGATGTGAGCCGGCGACGATCG 152 ****************** ************************ ************* ** consensus_3609#0 CGTGAAGTCAGCGAGTGTGCAACGCTTCATGAAGGAGTTTGAGAACATGATGTTCCGCGA 420 consensus_3609#1 CGTGAAATAGGCGAGCGTGCAACGCCTCATGAAGGAGTTTGAGAACATGGCGTTCCGCGA 212 ****** * ***** ********* *********************** ********* consensus_3609#0 CGGGGAGACCGTCGGCGACTTTGCGATGCGCATCAACGGGCCCACCGCGAGCCTGCGTGA 480 consensus_3609#1 CGGGGAGACCGTTGGTGACTTTGTGATGCGCATCAACGGGCTCACCGCAAGCCTGCGCGA 272 ************ ** ******* ***************** ****** ******** ** consensus_3609#0 CCTTGGGGAGGAGATAGAAGACAGCCACGTGGTGAAGAAGGTCCTGCGCGTGGTCCCGAA 540 consensus_3609#1 CCTCGGGGAGGAGATGGAAGACAGTCGCGTGGTGAAGAAGGTC--GCGCGTGGTCCCGAA 330 *** *********** ******** * **************** *************** consensus_3609#0 GAGGTTGAAGCAAGTCACGGTGGCAATTGAGATGCTCGAGGACATGGATGATATGTCCGT 600 consensus_3609#1 GAGGTTGAAGCAAGTCGCGGTTGCGATTGAGATGCTCGCGGACATGGATGTTATGTCCGT 390 **************** **** ** ************* *********** ********* consensus_3609#0 TGAGGAGCTCGTCGGGCGGCTGCAAGTGGCGGTGGACGCCGACGTTGAAGATCAAACGGA 660 consensus_3609#1 CGAGGAGCTCGTCGGACGCCTGCAAGTGGCGGAGGACGCCGACGCTGAAGATCACGTGGA 450 ************** ** ************* *********** ********* *** consensus_3609#0 GGTCCATGGCGGGCAGCTACTTCTCGCTGAGGAGCAGTGGGAGGCTAGCAGGCGTCAACG 720 consensus_3609#1 GGCCCATGGCGAGCAGCTACTTCTCACCGAGGAGCAGTGGGAGGCACGTCGGCGCCAGCG 510 ** ******** ************* * ***************** * **** ** ** consensus_3609#0 CGGCAGCAAGCAGCACACAGGCAGTGGGGTGCGCCATGACAATGGCAAGAAAGGCGACGA 780 consensus_3609#1 TCGCGAAAAGGAGCGT------------GTGCG---TGAGGGCGGCGCCAAGGACGACGG 555 ** *** *** ***** *** *** ** * ***** consensus_3609#0 CCATGGTGGAGACTGCGAGGATGACGATGACGACGGCAGCAGCACGAGCTCAGGGCTGGA 840 consensus_3609#1 CC------GAAACAGCGACAATGACGA---CGGCGGCAGCAGTGTGAGCTCCGAGGTAAA 606 ** ** ** **** ******* ** ********* ****** * * * * consensus_3609#0 TCGACAGGATCCCGTCGAATGTGCTCCACTTGATAGGATCCCGTCGAATGCGCTCCATTC 900 consensus_3609#1 CCGGC--GTCCGCGCCGTCCAGGAGGGAAGTGCTACAATTGTGGTGTTCGTGGCCATCTC 664 ** * * * ** ** * * ** ** ** * * * * * ** consensus_3609#0 GATTGCCTGGCTTGTCAAACTAAGCTAGTTCAACAGGTCCCTATTTTTGCAAATAAATCC 960 consensus_3609#1 ---TCCCGGGATTGCCG---CAAGCCAAGGAAGGAGGAGGCGCTCCTCGCCTCTG---CC 715 * ** ** *** * **** * * *** * * * ** * ** consensus_3609#0 GGATACCAACTTTTGTTTTTGTGACTTTTTATTAAAATAATAATATTTCTAAGAAAATGC 1020 consensus_3609#1 GACGACGAGCCGACGCTCCTGTAGGTCAGGTTTAGGGGGGTGA--TTGTTAGGAA----- 768 * ** * * * * *** * *** * * ** ** *** consensus_3609#0 CAGCGCACACCACGAGTGTGTTTGGGTCTACATGCATGTAGTAGAGTACGCGGACATCTG 1080 consensus_3609#1 ------------------------------------------------------------ consensus_3609#0 ATGTTTGATAAAAGATGTCCCTCCTTTTTGTGGCTTTCTCTGTTTTTTTCACTGGAACAA 1140 consensus_3609#1 ------------------------------------------------------------ consensus_3609#0 ATAAGATGTCCCTCCTTTTTTTAATCACTTTCAACTACGTGGTACGACACATTGAAGGTC 1200 consensus_3609#1 ------------------------------------------------------------ consensus_3609#0 CAGTGTAGTGCCTCTTTAAAACCCACCTATCAGGCCTCTTGAAGCCTATC 1250 consensus_3609#1 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Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||