Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3623 cluster # 3623       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3623#0 length = 1334 sequences # 2  

consensusID : consensus_3623#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1334
fasta sequence
                              [AAACATGGAGTGGCTTAATGGATTTTCTTTATAATTTTTCATTATAGTGTTGTAAGTTCATCATGCCCCGTAAAAGAAGTTCATCGTGCATAGTGACAGTTTTTTGAGGCATTTCGTTTTGAAAAAAAATCAACATGGATTTATAAAATGTGGACACATGGAATGTCCAAATTGGGACAACGATAGGGCATTTCACTTTTCATATGCTCCACACTTAGTCCAATGGAGCGAAAGTTAAACAGTATAGCATAGCGTAGTAAGGAACTAAGAGGCGCAATAAACATGAACTGAATTCTGATATGTTTACCTTCATGATCTCACAATCATATCAAATATGTTTAGATACTTTTCTTTTTTGCGAGGAGCTAATTAATTTTTATGGACATAAGAATAATGGCTTATTTCTCTTGATAGCCTCATTTGTTTGGTTCTATACAGGATTTCCAATTGACAAGGTGGCTATGTTAGACCAGGAAACCCGTAACTATGTTGGCTGTAAATTGCTTGAGCTTACAATAAAGGAGTTGTTTGTCTTCCGATTTATGCAGACTGATCCAAATTGGAGCAACTTCCTTTTCGATGAACCTACAAGGAAGTTCAATCTGATTGACTTTGGCGCAGCTCGTGATTTTCCAAAACGTTTTGTGGACGACTACCTTCGTATGGTAGTTGCCTGTGCGAACAAGGATAGAGCTGGTGTCTTAGAAATGTCCCGCAGACTAGGATTTCTCACAGGTGAGGAACCGGAAGTCATGCTGGATGCTCATGTCCAAGCTGCCTTCATTGTTGGTGTGCCATTCGCAAAACCAGGTGGTCACGATTTCCGTGCAAACAACATCACACATAGTGTTTCCAACCTCGGAGCTACCATGTTGAAGCACAGGCTGACGCCACCACCCGACGAAGTTTACAGCCTCCACAGAAAGTTGTCAGGTGCATTCCTAGCCTGCATCAAGATAGGGGCAGTTGTACCCTGTAGGGAGATGCTGTTCAAGGTTTATGAGCAATACAATTTCAGCGATGATCGTCCGGAAGTATTGTCCAGCACCGGATAGAAATATGAAAGGCCAACCTTTTGCC-CAC-TTCCCTTTT-GGGGAACTTTAAATAGTTACAGGTCGGTTGCAGCTCATTTTTTCGAGAGCCACACAATCGGCTGCTCCATTTGTTGTTA-GGCTGAAAGAA--TGCTC-TGACAAATTGTATTATT-GATAGC-TTGAAAAGTGAGGATATTCTGTTTAGGGATGAGCTCTACAAAAACTGTATAATGCTCTTATACTTAAGATGATGAAAGTTACTCTGCATATTTTTGAGCACAAGAAAATAAATGCATCAGAATG]

[+] EMBL AK105594             [AAACATGGAGTGGCTTAATGGATTTTCTTTATAATTTTTCATTATAGTGTTGTAAGTTCATCATGCCCCGTAAAAGAAGTTCATCGTGCATAGTGACAGTTTTTTGAGGCATTTCGTTTTGAAAAAAAATCAACATGGATTTATAAAATGTGGACACATGGAATGTCCAAATTGGGACAACGATAGGGCATTTCACTTTTCATATGCTCCACACTTAGTCCAATGGAGCGAAAGTTAAACAGTATAGCATAGCGTAGTAAGGAACTAAGAGGCGCAATAAACATGAACTGAATTCTGATATGTTTACCTTCATGATCTCACAATCATATCAAATATGTTTAGATACTTTTCTTTTTTGCGAGGAGCTAATTAATTTTTATGGACATAAGAATAATGGCTTATTTCTCTTGATAGCCTCATTTGTTTGGTTCTATACAGGATTTCCAATTGACAAGGTGGCTATGTTAGACCAGGAAACCCGTAACTATGTTGGCTGTAAATTGCTTGAGCTTACAATAAAGGAGTTGTTTGTCTTCCGATTTATGCAGACTGATCCAAATTGGAGCAACTTCCTTTTCGATGAACCTACAAGGAAGTTCAATCTGATTGACTTTGGCGCAGCTCGTGATTTTCCAAAACGTTTTGTGGACGACTACCTTCGTATGGTAGTTGCCTGTGCGAACAAGGATAGAGCTGGTGTCTTAGAAATGTCCCGCAGACTAGGATTTCTCACAGGTGAGGAACCGGAAGTCATGCTGGATGCTCATGTCCAAGCTGCCTTCATTGTTGGTGTGCCATTCGCAAAACCAGGTGGTCACGATTTCCGTGCAAACAACATCACACATAGTGTTTCCAACCTCGGAGCTACCATGTTGAAGCACAGGCTGACGCCACCACCCGACGAAGTTTACAGCCTCCACAGAAAGTTGTCAGGTGCATTCCTAGCCTGCATCAAGATAGGGGCAGTTGTACCCTGTAGGGAGATGCTGTTCAAGGTTTATGAGCAATACAATTTCAGCGATGATCGTCCGGAAGTATTGTCCAGCACCGGATAGAAATATGAAAGGCCAACCTTTTGCC CAC TTCCCTTTT GGGGAACTTTAAATAGTTACAGGTCGGTTGCAGCTCATTTTTTCGAGAGCCACACAATCGGCTGCTCCATTTGTTGTTA GGCTGAAAGAA  TGCTC TGACAAATTGTATTATT GATAGC TTGAAAAGTGAGGATATTCTGTTTAGGGATGAGCTCTACAAAAACTGTATAATGCTCTTATACTTAAGATGATGAAAGTTACTCTGCATATTTTTGAGCACAAGAAAATAAATGCATCAGAATG]
[+] EMBL D42876               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CACACATAGTGTTTCCAACCTCGGAGCTACCATGTTGAAGCACAGGCTGACGCCACCACCCGACGAAGTTTACAGCCTCCACAGAAAGTTGTCAGGTGCATTCCTAGCCTGCATCAAGATAGGGGCAGTTGTACCCTGTAGGGAGATGCTGTTCAAGGTTTATGAGCAATACAATTTCAGCGATGATCGTCCGGAAGTATTGTCCAGCACCGGATAGAAATATGAAAGGCCAACCTTTTGCCGCACTTTCCCTTTTGGGGGAACTTTAAATAGTTACAGGTCGGTTGCAGCTCATTTTTTCGAGAGCCACACAATCGGCTGCTCCATTTGTTGTTAGGGCTGAAAGAATGTGCTCTTGACAAATGGTTTTTTTGGTTAGCTTTGAAAGGGGGGGGTTTTtt                                                                                                        ]


>consensus_3623#0 AAACATGGAGTGGCTTAATGGATTTTCTTTATAATTTTTCATTATAGTGTTGTAAGTTCA TCATGCCCCGTAAAAGAAGTTCATCGTGCATAGTGACAGTTTTTTGAGGCATTTCGTTTT GAAAAAAAATCAACATGGATTTATAAAATGTGGACACATGGAATGTCCAAATTGGGACAA CGATAGGGCATTTCACTTTTCATATGCTCCACACTTAGTCCAATGGAGCGAAAGTTAAAC AGTATAGCATAGCGTAGTAAGGAACTAAGAGGCGCAATAAACATGAACTGAATTCTGATA TGTTTACCTTCATGATCTCACAATCATATCAAATATGTTTAGATACTTTTCTTTTTTGCG AGGAGCTAATTAATTTTTATGGACATAAGAATAATGGCTTATTTCTCTTGATAGCCTCAT TTGTTTGGTTCTATACAGGATTTCCAATTGACAAGGTGGCTATGTTAGACCAGGAAACCC GTAACTATGTTGGCTGTAAATTGCTTGAGCTTACAATAAAGGAGTTGTTTGTCTTCCGAT TTATGCAGACTGATCCAAATTGGAGCAACTTCCTTTTCGATGAACCTACAAGGAAGTTCA ATCTGATTGACTTTGGCGCAGCTCGTGATTTTCCAAAACGTTTTGTGGACGACTACCTTC GTATGGTAGTTGCCTGTGCGAACAAGGATAGAGCTGGTGTCTTAGAAATGTCCCGCAGAC TAGGATTTCTCACAGGTGAGGAACCGGAAGTCATGCTGGATGCTCATGTCCAAGCTGCCT TCATTGTTGGTGTGCCATTCGCAAAACCAGGTGGTCACGATTTCCGTGCAAACAACATCA CACATAGTGTTTCCAACCTCGGAGCTACCATGTTGAAGCACAGGCTGACGCCACCACCCG ACGAAGTTTACAGCCTCCACAGAAAGTTGTCAGGTGCATTCCTAGCCTGCATCAAGATAG GGGCAGTTGTACCCTGTAGGGAGATGCTGTTCAAGGTTTATGAGCAATACAATTTCAGCG ATGATCGTCCGGAAGTATTGTCCAGCACCGGATAGAAATATGAAAGGCCAACCTTTTGCC CACTTCCCTTTTGGGGAACTTTAAATAGTTACAGGTCGGTTGCAGCTCATTTTTTCGAGA GCCACACAATCGGCTGCTCCATTTGTTGTTAGGCTGAAAGAATGCTCTGACAAATTGTAT TATTGATAGCTTGAAAAGTGAGGATATTCTGTTTAGGGATGAGCTCTACAAAAACTGTAT AATGCTCTTATACTTAAGATGATGAAAGTTACTCTGCATATTTTTGAGCACAAGAAAATA AATGCATCAGAATG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)