These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3626#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 320 fasta sequence [TGCAGCCCCTCCGNGCGGGCCGCGATNGAGCGNGCGGCGGCGGGTGANGGCGGGGCGGCGGTGAAGGAGCGGGTGGTGNCCGTGGAGCTCCACAAGGAGGCCACCGAGGCGTACATNGCCTACGCCATGTCGGTGCTGCTCGGCCGNGCGCTCCCCGACGTCCGAGATGNGCTCAAGCCAGTGCACCGCAGGATACTTTATGCTATNCATGAGATGGGTCTTGCATCCCGTAGACCATTCAGAAAATGTGCAACGGTTGTCGGTNAGGTACTAGGTAAGTTCCANCCACATGGGAGATTCNGGCCGTATATGAAACCTTA] [+] EMBL AU197266 [TGCAGCCCCTCCGNGCGGGCCGCGATNGAGCGNGCGGCGGCGGGTGANGGCGGGGCGGCGGTGAAGGAGCGGGTGGTGNCCGTGGAGCTCCACAAGGAGGCCACCGAGGCGTACATNGCCTACGCCATGTCGGTGCTGCTCGGCCGNGCGCTCCCCGACGTCCGAGATGNGCTCAAGCCAGTGCACCGCAGGATACTTTATGCTATNCATGAGATGGGTCTTGCATCCCGTAGACCATTCAGAAAATGTGCAACGGTTGTCGGTNAGGTACTAGGTAAGTTCCANCCACATGGGAGATTCNGGCCGTATATGAAACCTTA] consensusID : consensus_3626#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 281 fasta sequence [GTCGTGGCCGTCCCCGCCGTCCGCTTCCTCTCCTCCTCATCCTCCTCCTCGGACGGCTCGCGCTCCGTGCAGCCCCTCCGCGCGGGCCGCGATGAGCGGGCGGCGGCGGGTGAGGGCGGTNTTTTTNGTGAAGGAGCGGGTGGTGCCCGTGGAGCTCCACAAGGAGGCCACCGAGGCGTACATGGCCTACGCCATGTCGGTGCTGCTCGGCCGCGCGCTCCCCGACGTCCGAGATGGGCTCAAGCCAGTGCACCGCAGGATACTTTATGCTATGCATGAGA] [+] EMBL AU176395 [GTCGTGGCCGTCCCCGCCGTCCGCTTCCTCTCCTCCTCATCCTCCTCCTCGGACGGCTCGCGCTCCGTGCAGCCCCTCCGCGCGGGCCGCGATGAGCGGGCGGCGGCGGGTGAGGGCGGTNTTTTTNGTGAAGGAGCGGGTGGTGCCCGTGGAGCTCCACAAGGAGGCCACCGAGGCGTACATGGCCTACGCCATGTCGGTGCTGCTCGGCCGCGCGCTCCCCGACGTCCGAGATGGGCTCAAGCCAGTGCACCGCAGGATACTTTATGCTATGCATGAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3626#0 ------------------------------------------------------------ consensus_3626#1 GTCGTGGCCGTCCCCGCCGTCCGCTTCCTCTCCTCCTCATCCTCCTCCTCGGACGGCTCG 60 consensus_3626#0 -------TGCAGCCCCTCCGNGCGGGCCGCGATNGAGCGNGCGGCGGCGGGTGANGGCGG 53 consensus_3626#1 CGCTCCGTGCAGCCCCTCCGCGCGGGCCGCGATG-AGCGGGCGGCGGCGGGTGAGGGCGG 119 ************* ************ **** ************** ***** consensus_3626#0 GGCGGC-GGTGAAGGAGCGGGTGGTGNCCGTGGAGCTCCACAAGGAGGCCACCGAGGCGT 112 consensus_3626#1 TNTTTTTNGTGAAGGAGCGGGTGGTGCCCGTGGAGCTCCACAAGGAGGCCACCGAGGCGT 179 ****************** ********************************* consensus_3626#0 ACATNGCCTACGCCATGTCGGTGCTGCTCGGCCGNGCGCTCCCCGACGTCCGAGATGNGC 172 consensus_3626#1 ACATGGCCTACGCCATGTCGGTGCTGCTCGGCCGCGCGCTCCCCGACGTCCGAGATGGGC 239 **** ***************************** ********************** ** consensus_3626#0 TCAAGCCAGTGCACCGCAGGATACTTTATGCTATNCATGAGATGGGTCTTGCATCCCGTA 232 consensus_3626#1 TCAAGCCAGTGCACCGCAGGATACTTTATGCTATGCATGAGA------------------ 281 ********************************** ******* consensus_3626#0 GACCATTCAGAAAATGTGCAACGGTTGTCGGTNAGGTACTAGGTAAGTTCCANCCACATG 292 consensus_3626#1 ------------------------------------------------------------ consensus_3626#0 GGAGATTCNGGCCGTATATGAAACCTTA 320 consensus_3626#1 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||