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Oryza sativa
cluster # 3630 cluster # 3630       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3630#0 length = 1785 sequences # 2  

consensusID : consensus_3630#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1785
fasta sequence
                              [TTCCATCAGCTCGACTGTTTCGTTGCGAAATCGTCTGTGTTGCGTAAGCAAACCACGGGATAGGATCATAGGAAGGAGAGGTGACGACAAAGCGCCACACCGCCGCGGCGGACCAACCACCAGTCCAACACTACTACGATCTCCGATCCACCACCAAACAGTTTTGTTCATCCATGGATCCCGCGACCGTCGGCGGCGGCGGCGGCGAGCCGGAGGCGGCAGCCGAGTGGCGCGCCCGCGCGGTGGGCGGGATGGAGTACGGCTGGTACCGCGCCGTGCCGGGCGGAACCGGCACGACGCTGCTCGCGCTCCGCCTCGCGCGCGGCGCAGAGGCGGCGGTGGCGGCGGCGACCGTCCAGGCGGCGCTGCGGGCCATCCTGGACGCTCACCCCGTCCTCCGCGCGCGCCTCCGCGGGTCCGCTTCCGGCAGCCCAACCCTCGCCTTCCCCTCCGCCGCCGCGCCGCCTCCGCCCCCGCTAGCGCTCGAGCTCCTCCCCGTGCCCGAATCCGCCACCGACTTCCCTTCCCTCCTCGAGCACGAGCTCAACCGCAACCCATGGACCGCCGCCGCCGCAACCGCAACCGCGTCCGAACACGAGCCCGACGCGCCACCGGTGCTCTTCGCCACGCTCTACGAGCTGCCGCCGCCAGCGGGTGGGGGGTCGGCGCTGTTCGTCCGGATCCACACGGCCGCGTGCGACCGCGCGGCGTCGGCCTCGCTGGTGAGGGAGCTCCTCGCGCAGCTGGCCGGCGATGGCGCCGCCGCCGCGGCAGCGAGCGAACCCGAGGACGCGGCGGTGCGCGCGTCGCTGGAGGAGAGGATACCGCAGAGGGACTCGTGGAAGCCGTTCTGGGCGCGGGGGCTCGACATGGTGGGCTACTCCATCAACGGCCTACGCACGTCGACGCTGCCGTTCGAGGTGACCGGCACGGAGAGGTCCACGCAGATGCTGCGCCTCGGCTTCGACCGCGACGAGACGACGAGGCTGCTCGATGCGTGCAAGCAGAACGGAGTGAAGCTTTGTGCAGCCATGGCGGCCGCGACGCTGCTCGCTGCACGGCAGTCGAAGCTGCAGCTGGCGAGCAACCAGCAGGAGACGTACTCCATTGCGACCCTTATCAATTGCCGCAAGTTTCTCGAACCGGCCCTGGATGATCACAACGTTGGGTTCTACCATTCTGCTATCACCAACACGCACGCAATCCATGGCGGAGAAGAGCTATGGGAGCTGGCCAAGAGGTGCCAAGATTCGTATACCAACGCCAAGAACAACAAGAAGCACCTCACTGACATTGCCGACCTCAACTTCCTCATGTGCCGGGCAATCGAGAACCCGCAGCTGACGACGGGCTCTGCGCTCCGGACGGCGGTCGTCTCCGTGTTCGAGGAGCCGGTGGTGTACGACCTCTCCGATCTGCAGAGCAAGGCCGGCGTGGAGGAATTCGTGTGCTGCGCCACCGTGCATGGCGTCGGGCCATCCATCGGATTGTTTGACTCCATCAGAGATGGTCAGCTGGAGTTCGCGTGCATGTACCCTTGCCCTCTCCATTCCAGAAAGCAGATGCAGGAGATCTTGAACAAGGTGAATCAGATCTTACACGAAGGGAGCATCGGAGATGATGAAAGCTTTGAAGATTGTACCTGAAAGATCGTCGAACCGTGGTACGAGGCTATGACTTATGATTTATGACCATTTTCGCCTTTTTGGGTAAATAAACTATCGGCATGTTGTCCCATGTAGTAATTGATGTTGCACGTTTTGGTGCAATATGTAGTGTCCTGAA]

[+] EMBL AK105529             [TTCCATCAGCTCGACTGTTTCGTTGCGAAATCGTCTGTGTTGCGTAAGCAAACCACGGGATAGGATCATAGGAAGGAGAGGTGACGACAAAGCGCCACACCGCCGCGGCGGACCAACCACCAGTCCAACACTACTACGATCTCCGATCCACCACCAAACAGTTTTGTTCATCCATGGATCCCGCGACCGTCGGCGGCGGCGGCGGCGAGCCGGAGGCGGCAGCCGAGTGGCGCGCCCGCGCGGTGGGCGGGATGGAGTACGGCTGGTACCGCGCCGTGCCGGGCGGAACCGGCACGACGCTGCTCGCGCTCCGCCTCGCGCGCGGCGCAGAGGCGGCGGTGGCGGCGGCGACCGTCCAGGCGGCGCTGCGGGCCATCCTGGACGCTCACCCCGTCCTCCGCGCGCGCCTCCGCGGGTCCGCTTCCGGCAGCCCAACCCTCGCCTTCCCCTCCGCCGCCGCGCCGCCTCCGCCCCCGCTAGCGCTCGAGCTCCTCCCCGTGCCCGAATCCGCCACCGACTTCCCTTCCCTCCTCGAGCACGAGCTCAACCGCAACCCATGGACCGCCGCCGCCGCAACCGCAACCGCGTCCGAACACGAGCCCGACGCGCCACCGGTGCTCTTCGCCACGCTCTACGAGCTGCCGCCGCCAGCGGGTGGGGGGTCGGCGCTGTTCGTCCGGATCCACACGGCCGCGTGCGACCGCGCGGCGTCGGCCTCGCTGGTGAGGGAGCTCCTCGCGCAGCTGGCCGGCGATGGCGCCGCCGCCGCGGCAGCGAGCGAACCCGAGGACGCGGCGGTGCGCGCGTCGCTGGAGGAGAGGATACCGCAGAGGGACTCGTGGAAGCCGTTCTGGGCGCGGGGGCTCGACATGGTGGGCTACTCCATCAACGGCCTACGCACGTCGACGCTGCCGTTCGAGGTGACCGGCACGGAGAGGTCCACGCAGATGCTGCGCCTCGGCTTCGACCGCGACGAGACGACGAGGCTGCTCGATGCGTGCAAGCAGAACGGAGTGAAGCTTTGTGCAGCCATGGCGGCCGCGACGCTGCTCGCTGCACGGCAGTCGAAGCTGCAGCTGGCGAGCAACCAGCAGGAGACGTACTCCATTGCGACCCTTATCAATTGCCGCAAGTTTCTCGAACCGGCCCTGGATGATCACAACGTTGGGTTCTACCATTCTGCTATCACCAACACGCACGCAATCCATGGCGGAGAAGAGCTATGGGAGCTGGCCAAGAGGTGCCAAGATTCGTATACCAACGCCAAGAACAACAAGAAGCACCTCACTGACATTGCCGACCTCAACTTCCTCATGTGCCGGGCAATCGAGAACCCGCAGCTGACGACGGGCTCTGCGCTCCGGACGGCGGTCGTCTCCGTGTTCGAGGAGCCGGTGGTGTACGACCTCTCCGATCTGCAGAGCAAGGCCGGCGTGGAGGAATTCGTGTGCTGCGCCACCGTGCATGGCGTCGGGCCATCCATCGGATTGTTTGACTCCATCAGAGATGGTCAGCTGGAGTTCGCGTGCATGTACCCTTGCCCTCTCCATTCCAGAAAGCAGATGCAGGAGATCTTGAACAAGGTGAATCAGATCTTACACGAAGGGAGCATCGGAGATGATGAAAGCTTTGAAGATTGTACCTGAAAGATCGTCGAACCGTGGTACGAGGCTATGACTTATGATTTATGACCATTTTCGCCTTTTTGGGTAAATAAACTATCGGCATGTTGTCCCATGTAGTAATTGATGTTGCACGTTTTGGTGCAATATGTAGTGTCCTGAA]
[+] EMBL AU070543             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CGGCAGTCGAAGCTGCAGCTGGCGAGCAACCAGCAGGAGACGTACTCCATTGCGACCCTTATCAATTGCCGCAAGTTTCTCGAACCGGCCCTGGATGATCACAACGTTGGGTTCTACCATTCTGCTATCACCAACACGCACGCAATCCATGGCGGAGAAGAGCTATGGGAGCTGGCCAAGAGGTGCCAAGATTCGTATACCAACGCCAAGAACAACAAGAAGCACCTCACTGACATTGCCGACCTCAACTTCCTCATGTGCCGGGCAATCGAGAACCCGCAGCTGACGACGGGCTCTGCGCTCCGGACGGCGGTCGTCTCCGTGTTCGAGGAGCCGGTGGTGTACGACCTCTCCGATCT                                                                                                                                                                                                                                                                                                                                                                                ]


>consensus_3630#0 TTCCATCAGCTCGACTGTTTCGTTGCGAAATCGTCTGTGTTGCGTAAGCAAACCACGGGA TAGGATCATAGGAAGGAGAGGTGACGACAAAGCGCCACACCGCCGCGGCGGACCAACCAC CAGTCCAACACTACTACGATCTCCGATCCACCACCAAACAGTTTTGTTCATCCATGGATC CCGCGACCGTCGGCGGCGGCGGCGGCGAGCCGGAGGCGGCAGCCGAGTGGCGCGCCCGCG CGGTGGGCGGGATGGAGTACGGCTGGTACCGCGCCGTGCCGGGCGGAACCGGCACGACGC TGCTCGCGCTCCGCCTCGCGCGCGGCGCAGAGGCGGCGGTGGCGGCGGCGACCGTCCAGG CGGCGCTGCGGGCCATCCTGGACGCTCACCCCGTCCTCCGCGCGCGCCTCCGCGGGTCCG CTTCCGGCAGCCCAACCCTCGCCTTCCCCTCCGCCGCCGCGCCGCCTCCGCCCCCGCTAG CGCTCGAGCTCCTCCCCGTGCCCGAATCCGCCACCGACTTCCCTTCCCTCCTCGAGCACG AGCTCAACCGCAACCCATGGACCGCCGCCGCCGCAACCGCAACCGCGTCCGAACACGAGC CCGACGCGCCACCGGTGCTCTTCGCCACGCTCTACGAGCTGCCGCCGCCAGCGGGTGGGG GGTCGGCGCTGTTCGTCCGGATCCACACGGCCGCGTGCGACCGCGCGGCGTCGGCCTCGC TGGTGAGGGAGCTCCTCGCGCAGCTGGCCGGCGATGGCGCCGCCGCCGCGGCAGCGAGCG AACCCGAGGACGCGGCGGTGCGCGCGTCGCTGGAGGAGAGGATACCGCAGAGGGACTCGT GGAAGCCGTTCTGGGCGCGGGGGCTCGACATGGTGGGCTACTCCATCAACGGCCTACGCA CGTCGACGCTGCCGTTCGAGGTGACCGGCACGGAGAGGTCCACGCAGATGCTGCGCCTCG GCTTCGACCGCGACGAGACGACGAGGCTGCTCGATGCGTGCAAGCAGAACGGAGTGAAGC TTTGTGCAGCCATGGCGGCCGCGACGCTGCTCGCTGCACGGCAGTCGAAGCTGCAGCTGG CGAGCAACCAGCAGGAGACGTACTCCATTGCGACCCTTATCAATTGCCGCAAGTTTCTCG AACCGGCCCTGGATGATCACAACGTTGGGTTCTACCATTCTGCTATCACCAACACGCACG CAATCCATGGCGGAGAAGAGCTATGGGAGCTGGCCAAGAGGTGCCAAGATTCGTATACCA ACGCCAAGAACAACAAGAAGCACCTCACTGACATTGCCGACCTCAACTTCCTCATGTGCC GGGCAATCGAGAACCCGCAGCTGACGACGGGCTCTGCGCTCCGGACGGCGGTCGTCTCCG TGTTCGAGGAGCCGGTGGTGTACGACCTCTCCGATCTGCAGAGCAAGGCCGGCGTGGAGG AATTCGTGTGCTGCGCCACCGTGCATGGCGTCGGGCCATCCATCGGATTGTTTGACTCCA TCAGAGATGGTCAGCTGGAGTTCGCGTGCATGTACCCTTGCCCTCTCCATTCCAGAAAGC AGATGCAGGAGATCTTGAACAAGGTGAATCAGATCTTACACGAAGGGAGCATCGGAGATG ATGAAAGCTTTGAAGATTGTACCTGAAAGATCGTCGAACCGTGGTACGAGGCTATGACTT ATGATTTATGACCATTTTCGCCTTTTTGGGTAAATAAACTATCGGCATGTTGTCCCATGT AGTAATTGATGTTGCACGTTTTGGTGCAATATGTAGTGTCCTGAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)