These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3643#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 794 fasta sequence [TTTTTGATGGTCTTCGAGCATTCAAGCAAGGATCCCCCAACATGAACTCTCTTGTCATGCTTCTCGGATTTGTGCTTCTTGGACGATCTCTTGAAGAAAGTGCCAGGCTTAAGGCTTCTAGCGATATGAATGAGCTCGTTTCACTCTTATCACCTCAGTCAAGATTGGTCGTTACTTCCTCAAGTGACGATCCATCCTCAGATGGTGTTTTGAATTCAGATGCAATCACTGTTGAGGTTCCTGTTGATGATGTTCGTGTTGGAGACTTCATATTGGTCCTTCCAGGAGAAACAATCCCTGTAGATGGAAATGTCCTTGGAGGATCAAGTTTTGTTGACGAATCAATGCTTACTGGGGAATCGTTGCCAGTCCCCAAGGAAAAAGGGTTTCCTGTATTTGCTGGAACTGTAAACTGGGATGGTCCTTTAAAGATCAAAGCGACAACTACTGGACCATCATCAACAATTGCTAAGATTGTCCGAATGGTTGAGGATGCACAAGCACGTGAAGCTCCCGTTCAAAGGCTTGCAGATTCAATTGCAGGGCCATTTGTTTATACTGTTATGACATTGTCTGCAGCAACATTTTCTTTCTGGTATTACATTGGCACCCACATCTTTCCAGAGGTCCTTCTAAATGATATTTCTGGTCCAGACGGGGATTCATTACTATTGAGCTTGAAGCTCGCTGTGGATGTACTTGTTGTTTCCTGTCCTTGTGCACTCGGATTAGCTACCCCTACAGCTATTTTGATAGGAACTTCACTGGGTGCTAAACGGGGACTACTTATTAGA] [+] EMBL CB627957 [TTTTTGATGGTCTTCGAGCATTCAAGCAAGGATCCCCCAACATGAACTCTCTTGTCATGCTTCTCGGATTTGTGCTTCTTGGACGATCTCTTGAAGAAAGTGCCAGGCTTAAGGCTTCTAGCGATATGAATGAGCTCGTTTCACTCTTATCACCTCAGTCAAGATTGGTCGTTACTTCCTCAAGTGACGATCCATCCTCAGATGGTGTTTTGAATTCAGATGCAATCACTGTTGAGGTTCCTGTTGATGATGTTCGTGTTGGAGACTTCATATTGGTCCTTCCAGGAGAAACAATCCCTGTAGATGGAAATGTCCTTGGAGGATCAAGTTTTGTTGACGAATCAATGCTTACTGGGGAATCGTTGCCAGTCCCCAAGGAAAAAGGGTTTCCTGTATTTGCTGGAACTGTAAACTGGGATGGTCCTTTAAAGATCAAAGCGACAACTACTGGACCATCATCAACAATTGCTAAGATTGTCCGAATGGTTGAGGATGCACAAGCACGTGAAGCTCCCGTTCAAAGGCTTGCAGATTCAATTGCAGGGCCATTTGTTTATACTGTTATGACATTGTCTGCAGCAACATTTTCTTTCTGGTATTACATTGGCACCCACATCTTTCCAGAGGTCCTTCTAAATGATATTTCTGGTCCAGACGGGGATTCATTACTATTGAGCTTGAAGCTCGCTGTGGATGTACTTGTTGTTTCCTGTCCTTGTGCACTCGGATTAGCTACCCCTACAGCTATTTTGATAGGAACTTCACTGGGTGCTAAACGGGGACTACTTATTAGA] consensusID : consensus_3643#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 777 fasta sequence [CGTGCTTGGCATGATGTGCGGTGGCTGCGCGGCGCGGGTGCGGACCATCCTGGCCGCGGACGAGCGGGTGGAGACCGCGGCGGTCAACCTCCTCGCGGAGTCGGCGGCCGTGCGGCTGAGGTCGCCGGAGCCGGCCGCCGGGAAGGAGCTGGCGGCGAGGCTGACGGAGTGCGGGTTCCCCTCGGTGGCGCGGCGAGGGGGCGCGGCCTCGGGGGCTAGCGACAGCGCTCGGAAGTGGAGGGAGATGGCGGCCAGGAAGGCGGAGCTCCTCACGCGGAGCCGTGGGCGCGTCGCCTTCGCGTGGACGCTCGTTGCGCTCTGCTGCGGCTCGCACGCAACCCATTTCCTACACTCGCTCGGCATCCACGTCGGCCATGGAACGTTTTTGGATCTGTTGCATAATTCGTATGTGAAATGTGGCATTGCAATAGCGGCATTGTTTGGGCCTGGAAGAGATATACTTTTTGATGGTCTTCGAGCATTCAAGCAAGGATCCCCCAACATGAACTCTCTTGTAGGGTTTGGATCTGCAGCGGCATTTGCTATCAGTTCAGTGTCCTTGCTGAACCCTGAACTGGAATGGAATTCAACCTTTTTTGATGAACCGCATGCAGGTCATGCTTCTCGGATTTGTGCTTCTTGGACGATCTCTTGAAGAAAGTGCCAGGCTTAAGGCTTCTAGCGATATGAATGAGCTCGTTTCACTCTTATCACCTCAGTCAAGATTGGTCGTTACTTCCTCAAGTGACGATCCATCCTCAGATGGTGTTTTGAATT] [+] EMBL CB659140 [CGTGCTTGGCATGATGTGCGGTGGCTGCGCGGCGCGGGTGCGGACCATCCTGGCCGCGGACGAGCGGGTGGAGACCGCGGCGGTCAACCTCCTCGCGGAGTCGGCGGCCGTGCGGCTGAGGTCGCCGGAGCCGGCCGCCGGGAAGGAGCTGGCGGCGAGGCTGACGGAGTGCGGGTTCCCCTCGGTGGCGCGGCGAGGGGGCGCGGCCTCGGGGGCTAGCGACAGCGCTCGGAAGTGGAGGGAGATGGCGGCCAGGAAGGCGGAGCTCCTCACGCGGAGCCGTGGGCGCGTCGCCTTCGCGTGGACGCTCGTTGCGCTCTGCTGCGGCTCGCACGCAACCCATTTCCTACACTCGCTCGGCATCCACGTCGGCCATGGAACGTTTTTGGATCTGTTGCATAATTCGTATGTGAAATGTGGCATTGCAATAGCGGCATTGTTTGGGCCTGGAAGAGATATACTTTTTGATGGTCTTCGAGCATTCAAGCAAGGATCCCCCAACATGAACTCTCTTGTAGGGTTTGGATCTGCAGCGGCATTTGCTATCAGTTCAGTGTCCTTGCTGAACCCTGAACTGGAATGGAATTCAACCTTTTTTGATGAACCGCATGCAGGTCATGCTTCTCGGATTTGTGCTTCTTGGACGATCTCTTGAAGAAAGTGCCAGGCTTAAGGCTTCTAGCGATATGAATGAGCTCGTTTCACTCTTATCACCTCAGTCAAGATTGGTCGTTACTTCCTCAAGTGACGATCCATCCTCAGATGGTGTTTTGAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3643#0 --------------TTTTTGATGGTCTTCGAGCATTCAAGCAAGGATCCCCCAACATGAA 46 consensus_3643#1 CGTGCTTGGCATGATGTGCGGTGGCTGCGCGGCGCGGGTGCGGACCATCCTGGCCGCGGA 60 * * * *** ** ** ** * * * consensus_3643#0 CTCTCTTGTCATGCTTCTCGGATTTGTGCTTCTTGGACGATCTCTTGAAGAAAGTGCCAG 106 consensus_3643#1 CGAGCGGGTGGAGACCGCGGCGGTCAACCTCCTCGCGGAGTCGGCGGCCGTGCGGCTGAG 120 * * ** * * * ** ** * ** * * * ** consensus_3643#0 GCTTAAGGCTTCTAGCGATATGAATGAGCTCGTTTCACTCTTATCACCTCAGTCAAGATT 166 consensus_3643#1 GTCGCCGGAGCCGGCCGCCGGGAAGGAGCTGGCGGCGAGGCTGACGG---AGTGCGGGTT 177 * ** * ** *** ***** * * * * *** * ** consensus_3643#0 GGTCGTTACTTCCTCAAGTGACGATCCATCCTCAGATGGTGTT--TTGAATTCAGATGCA 224 consensus_3643#1 CCCCTCGGTGGCGCGGCGAGGGGGCGCGGCCTCGGGGGCTAGCGACAGCGCTCGGAAGTG 237 * * * * * * **** * * * * ** ** * consensus_3643#0 ATCACTGTTGAGGTTCCTGTTGATGATGTTCGTGTTGGAGA-CTTCATATTGGTCCTTCC 283 consensus_3643#1 GAGGGAGATGGCGGCCAGGAAGGCGGAGCTCCTCACGCGGAGCCGTGGGCGCGTCGCCTT 297 * ** * * * * * * ** * * ** * *** consensus_3643#0 AGGAGAAACAATCCCTGTAGATGGAAATGTCCTTGGAGGATCAAGTTTTGTTGAC----- 338 consensus_3643#1 CGCGTGGACGCTCGTTGCGCTCTGCTGCGGCTCGCACGCAACCCATTTCCTACACTCGCT 357 * ** ** ** * * * * * * *** * ** consensus_3643#0 --GAATCAATGCTTACTGGGGAATCGTTGCCAGTCCCCAAGGAAAAAGGGTTTCCTGTAT 396 consensus_3643#1 CGGCATCCACGTCGGCCATGGAA-CGTTTTTGGATCTGTTGCATAA-----TTCGTATGT 411 * *** * * * **** **** * * * * ** *** * * * consensus_3643#0 TTGCTGGAACTGTAAACTGGGATGGTCCTTTAAAGATCAAAGCGACA-ACTACTGGACCA 455 consensus_3643#1 GAAATGTGGCATTGCAATAGCGGCATTGTTTGGGCCTGGAAGAGATATACTTTTTGATGG 471 ** * * * * * * *** * *** ** * *** * ** consensus_3643#0 TCATCAACAATTGCTAAGATTGTCCGAATGGTTGAGGATGCACAAGCACGTGAAGCTCCC 515 consensus_3643#1 TCTTCGAGCATT--CAAG----CAAGGATCCCCCAACATGAACTCTCTTGTAGGGTTTGG 525 ** ** * *** *** * ** * *** ** * ** * * consensus_3643#0 GTT--CAAAGGCTTGCAGATTCAATTGCAGGGCCATTTGTTTATACTGTTATGACATTGT 573 consensus_3643#1 ATCTGCAGCGGCATTTGCTATCAGTT-CAGTGTCCTTGCTGAACCCTGAACTGGAATGGA 584 * ** *** * *** ** *** * * ** * * *** ** ** * consensus_3643#0 CTGCAGCAACATTTTCTTTCTGGTATTACATTGGCACCCACATCTTTCCAGAGGTCCTTC 633 consensus_3643#1 ATTCAAC-----CTTTTTTGATGAACCGCAT--GCAGGT-CATGCTTCTCGGATTTGTGC 636 * ** * ** *** * * *** *** *** *** * * * * consensus_3643#0 TAAATGATATTTCTGGTCCAGACGGGGATTCATTACTATTGAGCTTGAAGCTCGCTGTGG 693 consensus_3643#1 TTCTTGGACGATCT---CTTGAAGAAAGTGCCAGGCT-TAAGGCTTCTAGC--GATATGA 690 * ** *** * ** * * * ** * **** *** * * ** consensus_3643#0 ATGTACTTGTTGTTTCCTGTCCTTGTGCACTCGGATTAGCTACCCCTACAGCTATTT-TG 752 consensus_3643#1 ATGAGCTCGTTTCACTCTTATCACCTCAGTCAAGATTGGTCGTTACTTCCTCAAGTGACG 750 *** ** *** ** * * **** * ** * * * * * consensus_3643#0 ATAGGAACTTCACTGG-GTGCTAAACGGGGACTACTTATTAGA 794 consensus_3643#1 ATCCATCCTCAGATGGTGTTTTGAATT---------------- 777 ** ** *** ** * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||