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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 371 cluster # 371       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_371#0 length = 419 sequences # 1  
consensus_371#1 length = 84 sequences # 1  

consensusID : consensus_371#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 419
fasta sequence
                              [CCTCGAGATTGGATCCCCCTTTTTGCTTGAATAATAAAGAAATGGTGGTCATTCATTCCCTCTACATTCTTGAGTTCAATTCTCTCTCTCGCTCAATCAATTCTATTCACAATACGTTATCGGCACTTTCCCTCTCCCAAGGGAGTTCGCGAAGTTTAAGAAGGAAGAACATCACTTTTTGATCTGCGGGAAAAGCCAATACAAAAACAACGGAAGGGACGATGCCTACCTTTCATTGGATCATGGATGCCGTTCTCGGCCTCCCTCGCCATCAGCGCGCACGCCAGCTTCGCTATCTTCTTCGTCTATCGATGAGGAGGACGCGTTGGGGATCCCTCGGAGGCAGGGCTAGGGTTGTGGCCGCCGCCACTACCCTCGCCGCCGGGTGACTGCAACTCCAGTTGAGGTTCCCCCGCCTG]

[+] EMBL CB684629             [CCTCGAGATTGGATCCCCCTTTTTGCTTGAATAATAAAGAAATGGTGGTCATTCATTCCCTCTACATTCTTGAGTTCAATTCTCTCTCTCGCTCAATCAATTCTATTCACAATACGTTATCGGCACTTTCCCTCTCCCAAGGGAGTTCGCGAAGTTTAAGAAGGAAGAACATCACTTTTTGATCTGCGGGAAAAGCCAATACAAAAACAACGGAAGGGACGATGCCTACCTTTCATTGGATCATGGATGCCGTTCTCGGCCTCCCTCGCCATCAGCGCGCACGCCAGCTTCGCTATCTTCTTCGTCTATCGATGAGGAGGACGCGTTGGGGATCCCTCGGAGGCAGGGCTAGGGTTGTGGCCGCCGCCACTACCCTCGCCGCCGGGTGACTGCAACTCCAGTTGAGGTTCCCCCGCCTG]


>consensus_371#0 CCTCGAGATTGGATCCCCCTTTTTGCTTGAATAATAAAGAAATGGTGGTCATTCATTCCC TCTACATTCTTGAGTTCAATTCTCTCTCTCGCTCAATCAATTCTATTCACAATACGTTAT CGGCACTTTCCCTCTCCCAAGGGAGTTCGCGAAGTTTAAGAAGGAAGAACATCACTTTTT GATCTGCGGGAAAAGCCAATACAAAAACAACGGAAGGGACGATGCCTACCTTTCATTGGA TCATGGATGCCGTTCTCGGCCTCCCTCGCCATCAGCGCGCACGCCAGCTTCGCTATCTTC TTCGTCTATCGATGAGGAGGACGCGTTGGGGATCCCTCGGAGGCAGGGCTAGGGTTGTGG CCGCCGCCACTACCCTCGCCGCCGGGTGACTGCAACTCCAGTTGAGGTTCCCCCGCCTG



consensusID : consensus_371#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 84
fasta sequence
                              [GAATTGATTGAGCGAGAGAGAGAATTGAACACAAGAATGTAGAGGGAATGAATGAGCAGATTTCTTTATTGATCAAAAAAAAAA]

[+] EMBL AA750798             [GAATTGATTGAGCGAGAGAGAGAATTGAACACAAGAATGTAGAGGGAATGAATGAGCAGATTTCTTTATTGATCAAAAAAAAAA]


>consensus_371#1 GAATTGATTGAGCGAGAGAGAGAATTGAACACAAGAATGTAGAGGGAATGAATGAGCAGA TTTCTTTATTGATCAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_371#0      CCTCGAGATTGGATCCCCCTTTTTGCTTGAATAATAAAGAAATGGTGGTCATTCATTCCC 60
consensus_371#1      ------------------------------------------------------------
                                                                                 

consensus_371#0      TCTACATTCTTGAGTTCAATTCTCTCTCTCGCTCAATCAATTCTATTCACAATACGTTAT 120
consensus_371#1      ------------------------------------------------------------
                                                                                 

consensus_371#0      CGGCACTTTCCCTCTCCCAAGGGAGTTCGCGAAGTTTAAGAAGGAAGAACATCACTTTTT 180
consensus_371#1      ---------------------------------------------------GAATTGATT 9
                                                                          * *  **

consensus_371#0      GATCT-GCGGGAAAAGCCAATACAAAAACAACGGAAGGGACGATGCCTACCTTTCATTG- 238
consensus_371#1      GAGCGAGAGAGAGAATTGAACACAAGAATGTAGAGGGAATGAATGAGCAGATTTCTTTAT 69
                     ** *  * * ** **   ** **** **    *   *     ***   *  **** **  

consensus_371#0      -GATCATGGATGCCGTTCTCGGCCTCCCTCGCCATCAGCGCGCACGCCAGCTTCGCTATC 297
consensus_371#1      TGATCAAAAAAAAAA--------------------------------------------- 84
                      *****   *                                                  

consensus_371#0      TTCTTCGTCTATCGATGAGGAGGACGCGTTGGGGATCCCTCGGAGGCAGGGCTAGGGTTG 357
consensus_371#1      ------------------------------------------------------------
                                                                                 

consensus_371#0      TGGCCGCCGCCACTACCCTCGCCGCCGGGTGACTGCAACTCCAGTTGAGGTTCCCCCGCC 417
consensus_371#1      ------------------------------------------------------------
                                                                                 

consensus_371#0      TG 419
consensus_371#1      --
                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)