cluster # 371

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Oryza sativa
cluster # 371 cluster # 371 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_371#0 length = 419 sequences # 1

consensus_371#1 length = 84 sequences # 1

consensusID : consensus_371#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 419
fasta sequence

                              [CCTCGAGATTGGATCCCCCTTTTTGCTTGAATAATAAAGAAATGGTGGTCATTCATTCCCTCTACATTCTTGAGTTCAATTCTCTCTCTCGCTCAATCAATTCTATTCACAATACGTTATCGGCACTTTCCCTCTCCCAAGGGAGTTCGCGAAGTTTAAGAAGGAAGAACATCACTTTTTGATCTGCGGGAAAAGCCAATACAAAAACAACGGAAGGGACGATGCCTACCTTTCATTGGATCATGGATGCCGTTCTCGGCCTCCCTCGCCATCAGCGCGCACGCCAGCTTCGCTATCTTCTTCGTCTATCGATGAGGAGGACGCGTTGGGGATCCCTCGGAGGCAGGGCTAGGGTTGTGGCCGCCGCCACTACCCTCGCCGCCGGGTGACTGCAACTCCAGTTGAGGTTCCCCCGCCTG]

[+] EMBL CB684629             [CCTCGAGATTGGATCCCCCTTTTTGCTTGAATAATAAAGAAATGGTGGTCATTCATTCCCTCTACATTCTTGAGTTCAATTCTCTCTCTCGCTCAATCAATTCTATTCACAATACGTTATCGGCACTTTCCCTCTCCCAAGGGAGTTCGCGAAGTTTAAGAAGGAAGAACATCACTTTTTGATCTGCGGGAAAAGCCAATACAAAAACAACGGAAGGGACGATGCCTACCTTTCATTGGATCATGGATGCCGTTCTCGGCCTCCCTCGCCATCAGCGCGCACGCCAGCTTCGCTATCTTCTTCGTCTATCGATGAGGAGGACGCGTTGGGGATCCCTCGGAGGCAGGGCTAGGGTTGTGGCCGCCGCCACTACCCTCGCCGCCGGGTGACTGCAACTCCAGTTGAGGTTCCCCCGCCTG]




>consensus_371#0
CCTCGAGATTGGATCCCCCTTTTTGCTTGAATAATAAAGAAATGGTGGTCATTCATTCCC
TCTACATTCTTGAGTTCAATTCTCTCTCTCGCTCAATCAATTCTATTCACAATACGTTAT
CGGCACTTTCCCTCTCCCAAGGGAGTTCGCGAAGTTTAAGAAGGAAGAACATCACTTTTT
GATCTGCGGGAAAAGCCAATACAAAAACAACGGAAGGGACGATGCCTACCTTTCATTGGA
TCATGGATGCCGTTCTCGGCCTCCCTCGCCATCAGCGCGCACGCCAGCTTCGCTATCTTC
TTCGTCTATCGATGAGGAGGACGCGTTGGGGATCCCTCGGAGGCAGGGCTAGGGTTGTGG
CCGCCGCCACTACCCTCGCCGCCGGGTGACTGCAACTCCAGTTGAGGTTCCCCCGCCTG

consensusID : consensus_371#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 84
fasta sequence

                              [GAATTGATTGAGCGAGAGAGAGAATTGAACACAAGAATGTAGAGGGAATGAATGAGCAGATTTCTTTATTGATCAAAAAAAAAA]

[+] EMBL AA750798             [GAATTGATTGAGCGAGAGAGAGAATTGAACACAAGAATGTAGAGGGAATGAATGAGCAGATTTCTTTATTGATCAAAAAAAAAA]




>consensus_371#1
GAATTGATTGAGCGAGAGAGAGAATTGAACACAAGAATGTAGAGGGAATGAATGAGCAGA
TTTCTTTATTGATCAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_371#0      CCTCGAGATTGGATCCCCCTTTTTGCTTGAATAATAAAGAAATGGTGGTCATTCATTCCC 60
consensus_371#1      ------------------------------------------------------------
                                                                                 

consensus_371#0      TCTACATTCTTGAGTTCAATTCTCTCTCTCGCTCAATCAATTCTATTCACAATACGTTAT 120
consensus_371#1      ------------------------------------------------------------
                                                                                 

consensus_371#0      CGGCACTTTCCCTCTCCCAAGGGAGTTCGCGAAGTTTAAGAAGGAAGAACATCACTTTTT 180
consensus_371#1      ---------------------------------------------------GAATTGATT 9
                                                                          * *  **

consensus_371#0      GATCT-GCGGGAAAAGCCAATACAAAAACAACGGAAGGGACGATGCCTACCTTTCATTG- 238
consensus_371#1      GAGCGAGAGAGAGAATTGAACACAAGAATGTAGAGGGAATGAATGAGCAGATTTCTTTAT 69
                     ** *  * * ** **   ** **** **    *   *     ***   *  **** **  

consensus_371#0      -GATCATGGATGCCGTTCTCGGCCTCCCTCGCCATCAGCGCGCACGCCAGCTTCGCTATC 297
consensus_371#1      TGATCAAAAAAAAAA--------------------------------------------- 84
                      *****   *                                                  

consensus_371#0      TTCTTCGTCTATCGATGAGGAGGACGCGTTGGGGATCCCTCGGAGGCAGGGCTAGGGTTG 357
consensus_371#1      ------------------------------------------------------------
                                                                                 

consensus_371#0      TGGCCGCCGCCACTACCCTCGCCGCCGGGTGACTGCAACTCCAGTTGAGGTTCCCCCGCC 417
consensus_371#1      ------------------------------------------------------------
                                                                                 

consensus_371#0      TG 419
consensus_371#1      --