These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3715#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 308 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATAGTAACAATTTAACAACCCGAGGGTGCAACCCTCACCCTTAATTTTAAAAACAAAACTCAACGGGCCCAACCAAAAAATTTTTACAGTAATCAGCAAGCCCTTAACAGGAACCCTTTACCCAAAAAAAAAAAATCAGAAATCGACAGGGCAACTACCACCGGTGCCATGGACTCGCTTCCACCAAAACCAAAAAAAAATCACCCAACCCCTTCCCTTAAACGCCTAAAAACTGGGGAACTTGGGGACGGCCTTGGGGCCCTCGGAAAC] [+] EMBL CF313967 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATAGTAACAATTTAACAACCCGAGGGTGCAACCCTCACCCTTAATTTTAAAAACAAAACTCAACGGGCCCAACCAAAAAATTTTTACAGTAATCAGCAAGCCCTTAACAGGAACCCTTTACCCAAAAAAAAAAAATCAGAAATCGACAGGGCAACTACCACCGGTGCCATGGACTCGCTTCCACCAAAACCAAAAAAAAATCACCCAACCCCTTCCCTTAAACGCCTAAAAACTGGGGAACTTGGGGACGGCCTTGGGGCCCTCGGAAAC] consensusID : consensus_3715#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 279 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAACAATTTAACAACCCAAGGGTGCAACCCTCCCCCTTAATTTTAAAAACAAAACTCAACGGGCCCAACCAAAAAATTTTTACAGTAATCAGCAAGCCCTTAACAGGAACCCTTTACCCAAAAAAAAAAAATTCGAAATCGACGGGGGAACTTCCCCCGGTGCCATGGACTCCCTTCAACAAAAACCAAAAAAAAATTCCCCAACCCCTTCTACCCTTAAGCCCCTAAAAACTGGGGAACTTGGGGACGG] [+] EMBL CF302683 [TTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAACAATTTAACAACCCAAGGGTGCAACCCTCCCCCTTAATTTTAAAAACAAAACTCAACGGGCCCAACCAAAAAATTTTTACAGTAATCAGCAAGCCCTTAACAGGAACCCTTTACCCAAAAAAAAAAAATTCGAAATCGACGGGGGAACTTCCCCCGGTGCCATGGACTCCCTTCAACAAAAACCAAAAAAAAATTCCCCAACCCCTTCTACCCTTAAGCCCCTAAAAACTGGGGAACTTGGGGACGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3715#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATAGTAACAATTTAACAACCCG 60 consensus_3715#1 -------------TTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAACAATTTAACAACCCA 47 ************************ *** **************** consensus_3715#0 AGGGTGCAACCCTCACCCTTAATTTTAAAAACAAAACTCAACGGGCCCAACCAAAAAATT 120 consensus_3715#1 AGGGTGCAACCCTCCCCCTTAATTTTAAAAACAAAACTCAACGGGCCCAACCAAAAAATT 107 ************** ********************************************* consensus_3715#0 TTTACAGTAATCAGCAAGCCCTTAACAGGAACCCTTTACCCAAAAAAAAAAAATCAGAAA 180 consensus_3715#1 TTTACAGTAATCAGCAAGCCCTTAACAGGAACCCTTTACCCAAAAAAAAAAAATTCGAAA 167 ****************************************************** **** consensus_3715#0 TCGACAGGGCAACTACCACCGGTGCCATGGACTCGCTTCCACCAAAACCAAAAAAAAATC 240 consensus_3715#1 TCGACGGGGGAACTTCCCCCGGTGCCATGGACTCCCTTCAACAAAAACCAAAAAAAAATT 227 ***** *** **** ** **************** **** ** **************** consensus_3715#0 ACCCAACCCCTTC---CCTTAAACGCCTAAAAACTGGGGAACTTGGGGACGGCCTTGGGG 297 consensus_3715#1 CCCCAACCCCTTCTACCCTTAAGCCCCTAAAAACTGGGGAACTTGGGGACGG-------- 279 ************ ****** * *************************** consensus_3715#0 CCCTCGGAAAC 308 consensus_3715#1 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||