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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3720#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1340 fasta sequence
[GAACAGTGCCAGAAAGCATCTACTCATGCAGAAATCTAAGTGCATTGCAGCTGTCTAACAATAGCTTCCATGGCCAGCTCTCGGAGAAAATCCGCAATCTGAAGTGCCTCTCATTTGTATCACTTGTTGACATCTCTCTTACAAATATCACAGGTTCACTTCAGATACTTCAGAGCTGCAGGAACCTGACCACCTTGCTTATTGGGTACAACTTCATGCAAGAGACCATGCCAGAGGATGACGAGATTTATGGTTTTGAGAATCTTCGGATTTTTTCCCTGAACGATTGTTCATTGTCTGGAAAAATACCTAAATGGTTATCAAAGCTCACAAATCTGGAGATGCTATCTTTATATAACAATCAACTAAACGGAGCAATACCTGACTGGATCAGCAGCCTAAACTTCTTGTTCCATATAGACATTTCAAACAACAGCCTTTCAGGGGAAATTCCATCAGCCTTAGTTGAGATGCCAATGCTAAAATCAGATAATGTTCCACCAAAGGTCTTTGAGCTGCCTATCTGTACAGGTTATGCACTTCAATACCGAATAAACAGTGCATTCCCTAAAGTGCTGAATCTAGGCATCAATAATTTCACTGGCATCATCCCGAATGAGATTGGTCAGTTGAAGGCACTCCAGTTACTCAATTTGAGTTCCAACAGATTGTCTGGAGAGATACCAGAATCAATCTACAAGCTCACAAACCTACAGGTGCTTGATTTGTCCAGCAATAATCTCACTGGTACAATTCCTGATGGGCTGAACAAACTTCACTTCCTTTCAGCATTCAACATTTCTAACAATGACCTTGAAGGGCCAGTTCCAAATGCAGGACAGCTTAGCACATTCCCAAGTACTAGCTTTGATGGGAACCCAAAGTTGTGTGGTCCTATGCTTGCACGCCATTGTGGTTTAGCACAAACACCATTTGTCTCCACAAAACAAAATGCTGACAAGGTTGTATCATCATTTGTCTTTATGATTTCCTTTGGTGCATTCTTTGCTGTAGGGGTGTTATATGATCAGATTGTCCTATCAAGGTTTTTCTAGCTCTACTTCAGTTAGGTCGCAAACCAACCAAGACCTGTGACACAATGATAGCTGTCACTATCTCCGGCCATGGTCTGATGATTTCTTATAGCCCAAGCTTAAGCCAGATCAATCAACAGCAATAACTGAATGCAGCATACCTGTCATTCAAGTACATAAGCAGAGAGATTAAATTGGAAGGTGTTTGTGTGTTAAGAGAAGCCACCTTTTTGCAGATATAAAATTTACATAATGCACTTATGTAAGACTTTTGAACGGAAGCGCCAAAGTTGTGTCAATAAATCA]
[+] EMBL AK100447 [GAACAGTGCCAGAAAGCATCTACTCATGCAGAAATCTAAGTGCATTGCAGCTGTCTAACAATAGCTTCCATGGCCAGCTCTCGGAGAAAATCCGCAATCTGAAGTGCCTCTCATTTGTATCACTTGTTGACATCTCTCTTACAAATATCACAGGTTCACTTCAGATACTTCAGAGCTGCAGGAACCTGACCACCTTGCTTATTGGGTACAACTTCATGCAAGAGACCATGCCAGAGGATGACGAGATTTATGGTTTTGAGAATCTTCGGATTTTTTCCCTGAACGATTGTTCATTGTCTGGAAAAATACCTAAATGGTTATCAAAGCTCACAAATCTGGAGATGCTATCTTTATATAACAATCAACTAAACGGAGCAATACCTGACTGGATCAGCAGCCTAAACTTCTTGTTCCATATAGACATTTCAAACAACAGCCTTTCAGGGGAAATTCCATCAGCCTTAGTTGAGATGCCAATGCTAAAATCAGATAATGTTCCACCAAAGGTCTTTGAGCTGCCTATCTGTACAGGTTATGCACTTCAATACCGAATAAACAGTGCATTCCCTAAAGTGCTGAATCTAGGCATCAATAATTTCACTGGCATCATCCCGAATGAGATTGGTCAGTTGAAGGCACTCCAGTTACTCAATTTGAGTTCCAACAGATTGTCTGGAGAGATACCAGAATCAATCTACAAGCTCACAAACCTACAGGTGCTTGATTTGTCCAGCAATAATCTCACTGGTACAATTCCTGATGGGCTGAACAAACTTCACTTCCTTTCAGCATTCAACATTTCTAACAATGACCTTGAAGGGCCAGTTCCAAATGCAGGACAGCTTAGCACATTCCCAAGTACTAGCTTTGATGGGAACCCAAAGTTGTGTGGTCCTATGCTTGCACGCCATTGTGGTTTAGCACAAACACCATTTGTCTCCACAAAACAAAATGCTGACAAGGTTGTATCATCATTTGTCTTTATGATTTCCTTTGGTGCATTCTTTGCTGTAGGGGTGTTATATGATCAGATTGTCCTATCAAGGTTTTTCTAGCTCTACTTCAGTTAGGTCGCAAACCAACCAAGACCTGTGACACAATGATAGCTGTCACTATCTCCGGCCATGGTCTGATGATTTCTTATAGCCCAAGCTTAAGCCAGATCAATCAACAGCAATAACTGAATGCAGCATACCTGTCATTCAAGTACATAAGCAGAGAGATTAAATTGGAAGGTGTTTGTGTGTTAAGAGAAGCCACCTTTTTGCAGATATAAAATTTACATAATGCACTTATGTAAGACTTTTGAACGGAAGCGCCAAAGTTGTGTCAATAAATCA]
consensusID : consensus_3720#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 805 fasta sequence
[ATTGGTCAATTGAAGGCACTTCTATTACTCAATTTGAGCTTCAACAGATTATCTGGAGACATACCAGAATCAATCTACAACCTCACAAACCTGCAGGTGCTTGATTTGTCAAGCAATAATCTCACTGGTACAATTCCTGATGGGCTGAATAAACTGCACTTTCTTTCAGCATTCAACATTTCTAACAATGACCTTGAAGGGCCAGTTCCAAATGCAGGACAGCTTAGCACATTCCCAAGTACTAGCTTTGATGGGAACCCAAGGTTGTGTGGTCCTATGCTCGCACACCATTGTGGTTTAGCAGAAACACCGTTTGTCTCCACAAAACAAACTAATGACAAGATTGTATCACCATTTGTCTTTATGATTTCCTTTGGCGCATTCTTTTGTGTAGGGGTGCTATATGATCAGATTGTCCTATCAAGGTTTTTCTAGCTCTGCTTCAGTTTTGATCATATTTGGTCCAGTCATACCAATATGTATCAAATGAAGCATATCAAACCAACCCAGACCTGTGACAAAATGACAGCCGTCACTATCTCCCGCCATGGCCTGATGATTTCTTGTAGTCCAAGCTTCAGTGAAATCAATCAACAGCTCCAATTGAACTGTGCACCAGTTATTCAAGTACACAGAGAGATAATTTGGAAGGTTTTTATGTGTTAAGAGAAGCCAATTTGTTGCAGATGTAAAATTTACATAATATAATTATGTAAGACTGTTGAACTGAAGAAGTTAACTGTGTCAGTAACTCAATCTAGTCCAAACCCACTGTAATTTTATTTTCAGTATTTACATTAGTACG]
[-] EMBL CB630989 [ATTGGTCAATTGAAGGCACTTCTATTACTCAATTTGAGCTTCAACAGATTATCTGGAGACATACCAGAATCAATCTACAACCTCACAAACCTGCAGGTGCTTGATTTGTCAAGCAATAATCTCACTGGTACAATTCCTGATGGGCTGAATAAACTGCACTTTCTTTCAGCATTCAACATTTCTAACAATGACCTTGAAGGGCCAGTTCCAAATGCAGGACAGCTTAGCACATTCCCAAGTACTAGCTTTGATGGGAACCCAAGGTTGTGTGGTCCTATGCTCGCACACCATTGTGGTTTAGCAGAAACACCGTTTGTCTCCACAAAACAAACTAATGACAAGATTGTATCACCATTTGTCTTTATGATTTCCTTTGGCGCATTCTTTTGTGTAGGGGTGCTATATGATCAGATTGTCCTATCAAGGTTTTTCTAGCTCTGCTTCAGTTTTGATCATATTTGGTCCAGTCATACCAATATGTATCAAATGAAGCATATCAAACCAACCCAGACCTGTGACAAAATGACAGCCGTCACTATCTCCCGCCATGGCCTGATGATTTCTTGTAGTCCAAGCTTCAGTGAAATCAATCAACAGCTCCAATTGAACTGTGCACCAGTTATTCAAGTACACAGAGAGATAATTTGGAAGGTTTTTATGTGTTAAGAGAAGCCAATTTGTTGCAGATGTAAAATTTACATAATATAATTATGTAAGACTGTTGAACTGAAGAAGTTAACTGTGTCAGTAACTCAATCTAGTCCAAACCCACTGTAATTTTATTTTCAGTATTTACATTAGTACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3720#0 GAACAGTGCCAGAAAGCATCTACTCATGCAGAAATCTAAGTGCATTGCAGCTGTCTAACA 60
consensus_3720#1 ------------------------------------------------------------
consensus_3720#0 ATAGCTTCCATGGCCAGCTCTCGGAGAAAATCCGCAATCTGAAGTGCCTCTCATTTGTAT 120
consensus_3720#1 ------------------------------------------------------------
consensus_3720#0 CACTTGTTGACATCTCTCTTACAAATATCACAGGTTCACTTCAGATACTTCAGAGCTGCA 180
consensus_3720#1 ------------------------------------------------------------
consensus_3720#0 GGAACCTGACCACCTTGCTTATTGGGTACAACTTCATGCAAGAGACCATGCCAGAGGATG 240
consensus_3720#1 ------------------------------------------------------------
consensus_3720#0 ACGAGATTTATGGTTTTGAGAATCTTCGGATTTTTTCCCTGAACGATTGTTCATTGTCTG 300
consensus_3720#1 ------------------------------------------------------------
consensus_3720#0 GAAAAATACCTAAATGGTTATCAAAGCTCACAAATCTGGAGATGCTATCTTTATATAACA 360
consensus_3720#1 ------------------------------------------------------------
consensus_3720#0 ATCAACTAAACGGAGCAATACCTGACTGGATCAGCAGCCTAAACTTCTTGTTCCATATAG 420
consensus_3720#1 ------------------------------------------------------------
consensus_3720#0 ACATTTCAAACAACAGCCTTTCAGGGGAAATTCCATCAGCCTTAGTTGAGATGCCAATGC 480
consensus_3720#1 ------------------------------------------------------------
consensus_3720#0 TAAAATCAGATAATGTTCCACCAAAGGTCTTTGAGCTGCCTATCTGTACAGGTTATGCAC 540
consensus_3720#1 ------------------------------------------------------------
consensus_3720#0 TTCAATACCGAATAAACAGTGCATTCCCTAAAGTGCTGAATCTAGGCATCAATAATTTCA 600
consensus_3720#1 ------------------------------------------------------------
consensus_3720#0 CTGGCATCATCCCGAATGAGATTGGTCAGTTGAAGGCACTCCAGTTACTCAATTTGAGTT 660
consensus_3720#1 --------------------ATTGGTCAATTGAAGGCACTTCTATTACTCAATTTGAGCT 40
******** *********** * ************** *
consensus_3720#0 CCAACAGATTGTCTGGAGAGATACCAGAATCAATCTACAAGCTCACAAACCTACAGGTGC 720
consensus_3720#1 TCAACAGATTATCTGGAGACATACCAGAATCAATCTACAACCTCACAAACCTGCAGGTGC 100
********* ******** ******************** *********** *******
consensus_3720#0 TTGATTTGTCCAGCAATAATCTCACTGGTACAATTCCTGATGGGCTGAACAAACTTCACT 780
consensus_3720#1 TTGATTTGTCAAGCAATAATCTCACTGGTACAATTCCTGATGGGCTGAATAAACTGCACT 160
********** ************************************** ***** ****
consensus_3720#0 TCCTTTCAGCATTCAACATTTCTAACAATGACCTTGAAGGGCCAGTTCCAAATGCAGGAC 840
consensus_3720#1 TTCTTTCAGCATTCAACATTTCTAACAATGACCTTGAAGGGCCAGTTCCAAATGCAGGAC 220
* **********************************************************
consensus_3720#0 AGCTTAGCACATTCCCAAGTACTAGCTTTGATGGGAACCCAAAGTTGTGTGGTCCTATGC 900
consensus_3720#1 AGCTTAGCACATTCCCAAGTACTAGCTTTGATGGGAACCCAAGGTTGTGTGGTCCTATGC 280
****************************************** *****************
consensus_3720#0 TTGCACGCCATTGTGGTTTAGCACAAACACCATTTGTCTCCACAAAACAAAATGCTGACA 960
consensus_3720#1 TCGCACACCATTGTGGTTTAGCAGAAACACCGTTTGTCTCCACAAAACAAACTAATGACA 340
* **** **************** ******* ******************* * *****
consensus_3720#0 AGGTTGTATCATCATTTGTCTTTATGATTTCCTTTGGTGCATTCTTTGCTGTAGGGGTGT 1020
consensus_3720#1 AGATTGTATCACCATTTGTCTTTATGATTTCCTTTGGCGCATTCTTTTGTGTAGGGGTGC 400
** ******** ************************* ********* **********
consensus_3720#0 TATATGATCAGATTGTCCTATCAAGGTTTTTCTAGCTCTACTTCAGTTA-GGTCG----- 1074
consensus_3720#1 TATATGATCAGATTGTCCTATCAAGGTTTTTCTAGCTCTGCTTCAGTTTTGATCATATTT 460
*************************************** ******** * **
consensus_3720#0 -------------------------------------CAAACCAACCAAGACCTGTGACA 1097
consensus_3720#1 GGTCCAGTCATACCAATATGTATCAAATGAAGCATATCAAACCAACCCAGACCTGTGACA 520
********** ************
consensus_3720#0 CAATGATAGCTGTCACTATCTCCGGCCATGGTCTGATGATTTCTTATAGCCCAAGCTTAA 1157
consensus_3720#1 AAATGACAGCCGTCACTATCTCCCGCCATGGCCTGATGATTTCTTGTAGTCCAAGCTTCA 580
***** *** ************ ******* ************* *** ******** *
consensus_3720#0 GCCAGATCAATCAACAGCAATAACTGAATGCAGCATACCTGTCATTCAAGTACATAAGCA 1217
consensus_3720#1 GTGAAATCAATCAACAGCTCCAATTGAA--CTGTGCACCAGTTATTCAAGTACA----CA 634
* * ************* ** **** * * *** ** *********** **
consensus_3720#0 GAGAGATTAAATTGGAAGGTGTTTGTGTGTTAAGAGAAGCCACCTTTTTGCAGATATAAA 1277
consensus_3720#1 GAGAGAT-AATTTGGAAGGTTTTTATGTGTTAAGAGAAGCCAATTTGTTGCAGATGTAAA 693
******* ** ********* *** ***************** ** ******** ****
consensus_3720#0 ATTTACATAATGCACTTATGTAAGACTTTTGAACGGAAGCGCCAAAGTTGTGTCAATAAA 1337
consensus_3720#1 ATTTACATAATATAATTATGTAAGACTGTTGAACTGAAGAAGTTAA-CTGTGTCAGTAAC 752
*********** * ************ ****** **** ** ******* ***
consensus_3720#0 TCA-------------------------------------------------- 1340
consensus_3720#1 TCAATCTAGTCCAAACCCACTGTAATTTTATTTTCAGTATTTACATTAGTACG 805
***
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||