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Oryza sativa
cluster # 3727 cluster # 3727       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3727#0 length = 1524 sequences # 2  

consensusID : consensus_3727#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1524
fasta sequence
                              [TTAGAAGGGCCCGCCGCCCTTGCCCCACTGGCCACCAGCCACGCCGCCCCGCTTGCCCGCGCCTCCCCTCCACCGTCCCCGCCGCCTCGCCTAACCCTATCGACGGATCGGTGGCGTGATGGCGTCGCATCTCCCCGCCGCCGTGTTATCTTCCCCTATCCAGAATCGAGTTTTTGAGCACCCACCCTGCTCTGTTCCCCGCTGGCGACTGCGACCCCCCCGCATCTCCTCTCTTCTCGTCGGCCCTGTCCCCAGATATCGCGGGCAATGGACTAAGCACAAGTACCAAAACCTGTTTGACTTGGTGAAGTTGGACTTGCAGGTAAAAGCTTATCAAAATTATGATGCTGGTAATCGTCAGATACAACATTGTCTGGGAGGATATTAGTGAGAAATTGACAACCCGAAATCGCAAGAATTGCTGCATTAAGTGTTGATTTCAGACAGAAGTGCAGTGATCGTATCATTATCCATGTATTTCATCGGATTTGTCCATACAATAATAATACTTACAGTGTCCTCAAAATGGGAAAAGTACATGCATTTTGGTTATTTTAGGTGATAAAAGTTGATAGGCTCGGTCTCCGTACCATAGTAATCTATACCTATATTTAAAAAATATGTAAGTATTCCGTATTTCTTTTTTCGCCCTCTTTTTCTTTTTTTCCGTCATTTTTTCCTCCTTTTTTTTTGCCATCCACTTTTTTCTTGCTGTTTCTTCGCTATTCGGCGCGCCCTTTTTGGTCATTTTTCTCTTTTTTTTCATCCGCTTTTTTGCCGATATTTTTAAGTTGCTGTTTTTTTTCACGCGTTTTTTCAGTTTTTTTCATCCGCTATTTTTTGCATGGTTTTTTTCGTCCTTTTTTTTTCTTTCATCCGCTTTTTCGCTATTTTTTTACGTCATATTTTTTTGGCACGTGGTAAGAATTCAGTTTTTTTTTATCCACTTGGTTTTTTTTCCTGTCATCGGGATTTAATCTTCAACAGCCATCCAGGCCGAATCCTAGCGTCGCTGCCACGTTAATCTGCCTCCCCATTCGTTTCCTTCTTCAATTTATTTGCAAAAATTGATTCTGCACTACTTGGTCATCATTTTCTCCTTCATTTTCTATTATTATTTGGTTTTACTTCACCGGATTTAATCTCCATTTTAACAATCGCCGTTTTTGTCCCATGTTTTACGGAATAAAACCGGGAAGAGAAGATCGAGTGGATAAAAACCCTCAACCATTAATTTTGGTGATGGGAGGATCGAGAAAGATTCGACCGGATTTGATGGGAGGATCAGCTCCTGCATCGTAGGCACTTCAGACGGCTGTTAGTTGTGCGAGCTAGACCTACAGCTCCACTTATGGGTTTAGCTGGCTTAAAAGGAAGAAAGTAATGGGTTTGTAGTCGAAAACCATCGAAAACCAAGGAAGTAGTGTAATGCATAGCGATAAAAACGGTTTTACCCGTTGCTTCGCACGGGCATTATTTCTAGTATGAGAAATAAACAACTATGGTTCTATAATACATGATTAT]

[+] EMBL AK071166             [TTAGAAGGGCCCGCCGCCCTTGCCCCACTGGCCACCAGCCACGCCGCCCCGCTTGCCCGCGCCTCCCCTCCACCGTCCCCGCCGCCTCGCCTAACCCTATCGACGGATCGGTGGCGTGATGGCGTCGCATCTCCCCGCCGCCGTGTTATCTTCCCCTATCCAGAATCGAGTTTTTGAGCACCCACCCTGCTCTGTTCCCCGCTGGCGACTGCGACCCCCCCGCATCTCCTCTCTTCTCGTCGGCCCTGTCCCCAGATATCGCGGGCAATGGACTAAGCACAAGTACCAAAACCTGTTTGACTTGGTGAAGTTGGACTTGCAGGTAAAAGCTTATCAAAATTATGATGCTGGTAATCGTCAGATACAACATTGTCTGGGAGGATATTAGTGAGAAATTGACAACCCGAAATCGCAAGAATTGCTGCATTAAGTGTTGATTTCAGACAGAAGTGCAGTGATCGTATCATTATCCATGTATTTCATCGGATTTGTCCATACAATAATAATACTTACAGTGTCCTCAAAATGGGAAAAGTACATGCATTTTGGTTATTTTAGGTGATAAAAGTTGATAGGCTCGGTCTCCGTACCATAGTAATCTATACCTATATTTAAAAAATATGTAAGTATTCCGTATTTCTTTTTTCGCCCTCTTTTTCTTTTTTTCCGTCATTTTTTCCTCCTTTTTTTTTGCCATCCACTTTTTTCTTGCTGTTTCTTCGCTATTCGGCGCGCCCTTTTTGGTCATTTTTCTCTTTTTTTTCATCCGCTTTTTTGCCGATATTTTTAAGTTGCTGTTTTTTTTCACGCGTTTTTTCAGTTTTTTTCATCCGCTATTTTTTGCATGGTTTTTTTCGTCCTTTTTTTTTCTTTCATCCGCTTTTTCGCTATTTTTTTACGTCATATTTTTTTGGCACGTGGTAAGAATTCAGTTTTTTTTTATCCACTTGGTTTTTTTTCCTGTCATCGGGATTTAATCTTCAACAGCCATCCAGGCCGAATCCTAGCGTCGCTGCCACGTTAATCTGCCTCCCCATTCGTTTCCTTCTTCAATTTATTTGCAAAAATTGATTCTGCACTACTTGGTCATCATTTTCTCCTTCATTTTCTATTATTATTTGGTTTTACTTCACCGGATTTAATCTCCATTTTAACAATCGCCGTTTTTGTCCCATGTTTTACGGAATAAAACCGGGAAGAGAAGATCGAGTGGATAAAAACCCTCAACCATTAATTTTGGTGATGGGAGGATCGAGAAAGATTCGACCGGATTTGATGGGAGGATCAGCTCCTGCATCGTAGGCACTTCAGACGGCTGTTAGTTGTGCGAGCTAGACCTACAGCTCCACTTATGGGTTTAGCTGGCTTAAAAGGAAGAAAGTAATGGGTTTGTAGTCGAAAACCATCGAAAACCAAGGAAGTAGTGTAATGCATAGCGATAAAAACGGTTTTACCCGTTGCTTCGCACGGGCATTATTTCTAGTATGAGAAATAAACAACTATGGTTCTATAATACATGATTA ]
[-] EMBL CB631119             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ATTTTTAAGTTGCTGTTTTTTTTCACGCGTTTTTTCAGTTTTTTTCATCCGCTATTTTTTGCATGGTTTTTTTCGTCCTTTTTTTTTCTTTCATCCGCTTTTTCGCTATTTTTTTACGTCATATTTTTTTGGCACGTGGTAAGAATTCAGTTTTTTTTTATCCACTTGGTTTTTTTTCCTGTCATCGGGATTTAATCTTCAACAGCCATCCAGGCCGAATCCTAGCGCCGCTGCCACGTTAATCTGCCTCCCCATTCGTTTCCTTCTTCAATTTATTTGCAAAAATTGATTCTGCACTACTTGGTCATCATTTTCTCCTTCATTTTCTATTATTATTTGGTTTTACTTCACCGGATTTAATCTCCATTTTAACAATCGCCGTTTTTGTCCCATGTTTTACGGAATAAAACCGGGAAGAGAAGATCGAGTGGATAAAAACCCTCAACCATTAATTTTGGTGATGGGAGGATCGAGAAAGATTCGACCGGATTTGATGGGAGGATCAGCTCCTGCATCGTAGGCACTTCAGACGGCTGTTAGTTGTGCGAGCTAGACCTACAGCTCCACTTATGGGTTTAGCTGGCTTAAAAGGAAGAAAGTAATGGGTTTGTAGTCGAAAACCATCGAAAACCAAGGAAGTAGTGTAATGCATAGCGATAAAAACGGTTTTACCCGTTGCTTCGCACGGGCATTATTTCTAGTATGAGAAATAAACAACTATGGTTCTATAATACATGATTAT]


>consensus_3727#0 TTAGAAGGGCCCGCCGCCCTTGCCCCACTGGCCACCAGCCACGCCGCCCCGCTTGCCCGC GCCTCCCCTCCACCGTCCCCGCCGCCTCGCCTAACCCTATCGACGGATCGGTGGCGTGAT GGCGTCGCATCTCCCCGCCGCCGTGTTATCTTCCCCTATCCAGAATCGAGTTTTTGAGCA CCCACCCTGCTCTGTTCCCCGCTGGCGACTGCGACCCCCCCGCATCTCCTCTCTTCTCGT CGGCCCTGTCCCCAGATATCGCGGGCAATGGACTAAGCACAAGTACCAAAACCTGTTTGA CTTGGTGAAGTTGGACTTGCAGGTAAAAGCTTATCAAAATTATGATGCTGGTAATCGTCA GATACAACATTGTCTGGGAGGATATTAGTGAGAAATTGACAACCCGAAATCGCAAGAATT GCTGCATTAAGTGTTGATTTCAGACAGAAGTGCAGTGATCGTATCATTATCCATGTATTT CATCGGATTTGTCCATACAATAATAATACTTACAGTGTCCTCAAAATGGGAAAAGTACAT GCATTTTGGTTATTTTAGGTGATAAAAGTTGATAGGCTCGGTCTCCGTACCATAGTAATC TATACCTATATTTAAAAAATATGTAAGTATTCCGTATTTCTTTTTTCGCCCTCTTTTTCT TTTTTTCCGTCATTTTTTCCTCCTTTTTTTTTGCCATCCACTTTTTTCTTGCTGTTTCTT CGCTATTCGGCGCGCCCTTTTTGGTCATTTTTCTCTTTTTTTTCATCCGCTTTTTTGCCG ATATTTTTAAGTTGCTGTTTTTTTTCACGCGTTTTTTCAGTTTTTTTCATCCGCTATTTT TTGCATGGTTTTTTTCGTCCTTTTTTTTTCTTTCATCCGCTTTTTCGCTATTTTTTTACG TCATATTTTTTTGGCACGTGGTAAGAATTCAGTTTTTTTTTATCCACTTGGTTTTTTTTC CTGTCATCGGGATTTAATCTTCAACAGCCATCCAGGCCGAATCCTAGCGTCGCTGCCACG TTAATCTGCCTCCCCATTCGTTTCCTTCTTCAATTTATTTGCAAAAATTGATTCTGCACT ACTTGGTCATCATTTTCTCCTTCATTTTCTATTATTATTTGGTTTTACTTCACCGGATTT AATCTCCATTTTAACAATCGCCGTTTTTGTCCCATGTTTTACGGAATAAAACCGGGAAGA GAAGATCGAGTGGATAAAAACCCTCAACCATTAATTTTGGTGATGGGAGGATCGAGAAAG ATTCGACCGGATTTGATGGGAGGATCAGCTCCTGCATCGTAGGCACTTCAGACGGCTGTT AGTTGTGCGAGCTAGACCTACAGCTCCACTTATGGGTTTAGCTGGCTTAAAAGGAAGAAA GTAATGGGTTTGTAGTCGAAAACCATCGAAAACCAAGGAAGTAGTGTAATGCATAGCGAT AAAAACGGTTTTACCCGTTGCTTCGCACGGGCATTATTTCTAGTATGAGAAATAAACAAC TATGGTTCTATAATACATGATTAT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)