These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3736#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 795 fasta sequence [GTTACAGAGGGTTCTTATAAATACACCTTATTTTTAGTATCAAACAAGATCTTCAAGAATTAGTGGTTGCTCAGAAGCCAACAAATAGGCTCCGAGAGCATCCCAGTAGCAATCACCTAGCTAGTGTGTTCTACTATATTGGTTATCAACGACCTTTGCCGATGATTTATTTTGTTCTCCAAAGCTATGCCAGCACGATCAGGACGTTAGCTGCTGCTGGGGCGACTGTCGCTGCTTGGAATGGCAAGCAGCGTCTGGGGAAGGTTACTGACCTTTGTTGCCTCATCTGCACGCTTTGCCGGCTTCTGTATTTCAATACCATGATGATGAAGTTCAGCAGTAGCCTTCGGTGGGTTAACTTGCCTATCTTCGGAGTCTATTTTTCGTTTCTTCATGCTGGTAGAACTCCTGTTGCCATCCGATCCTGCACCGACGCTCATTTCATTAACTTTGTCGACACTTCTGCTACTCTGACTATTTCCATTGTTAACCACAGGATACATGGTATGGGTGCTTGTCATATTTTGCAGGGACTGTGCAGATTGTGGGGCGGCAGGGTCGCTGTCACGCAACTTGGCAGCAGCAGCCAGCCTTCTCTTCATCCTCTGGTCATTGCGGACCTGAATGGCATGATTGGTTTAAATGAGGTACTATAAAATAGGATAATTTGGAAATTTACATTACTGAATTGTACACTTGTTTTCCTTCACTCCATATGATTATGACGGTTAAAAATAAAGACATGGTTAAGCTAAAATGGCATTCACGCCTTAAGAGAAGATCTTTCACCTTCCT] [+] EMBL CB631702 [GTTACAGAGGGTTCTTATAAATACACCTTATTTTTAGTATCAAACAAGATCTTCAAGAATTAGTGGTTGCTCAGAAGCCAACAAATAGGCTCCGAGAGCATCCCAGTAGCAATCACCTAGCTAGTGTGTTCTACTATATTGGTTATCAACGACCTTTGCCGATGATTTATTTTGTTCTCCAAAGCTATGCCAGCACGATCAGGACGTTAGCTGCTGCTGGGGCGACTGTCGCTGCTTGGAATGGCAAGCAGCGTCTGGGGAAGGTTACTGACCTTTGTTGCCTCATCTGCACGCTTTGCCGGCTTCTGTATTTCAATACCATGATGATGAAGTTCAGCAGTAGCCTTCGGTGGGTTAACTTGCCTATCTTCGGAGTCTATTTTTCGTTTCTTCATGCTGGTAGAACTCCTGTTGCCATCCGATCCTGCACCGACGCTCATTTCATTAACTTTGTCGACACTTCTGCTACTCTGACTATTTCCATTGTTAACCACAGGATACATGGTATGGGTGCTTGTCATATTTTGCAGGGACTGTGCAGATTGTGGGGCGGCAGGGTCGCTGTCACGCAACTTGGCAGCAGCAGCCAGCCTTCTCTTCATCCTCTGGTCATTGCGGACCTGAATGGCATGATTGGTTTAAATGAGGTACTATAAAATAGGATAATTTGGAAATTTACATTACTGAATTGTACACTTGTTTTCCTTCACTCCATATGATTATGACGGTTAAAAATAAAGACATGGTTAAGCTAAAATGGCATTCACGCCTTAAGAGAAGATCTTTCACCTTCCT] consensusID : consensus_3736#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 723 fasta sequence [TATAAATACACCTTATCCTTAAAAGTCAACAAGATCTTCAAGAATTAGTGGTTGCTCAGAAGCCAACAAATAGGCTCCGAGAGCATCCCCCTAACAATCACCTAGCTAGTGTGTTCTACTATATTGGTTATCAACGACCTTTGCCGATGATTTATTTTGTTCTCCAAAGCTATGCCAGCACGATCAGGACGTTAGCTGCTGCTGGGGCGACTGTCGCTGCTTGGAATGGCAAGCAGCGTCTGGGGAAGGTTACTGACCTTTGTTGCCTCATCTGCACGCTTTGCCGGCTTCTGTATTTCAATACCATGATGATGAAGTTCAGCAGTAGCCTTCGGTGGGTTAACTTGCCTATCTTCAGAGTCTATTTTTCGTTTCTTCATGCTGGTAGAACTCCTGTTGCCATCCGATCCTGCACCGACGCTCATTTCATTAACTTTGTCGACACTTCTGCTACTCTGACTATTTCCATTGTTAACCACAGGATACATGGTATGGGTGCTTGTCATATTTTGCAGGGACTGTGCAGATTGTGGGGCGGCAGGGTCGCTGTCACGCAACTTGGCAGCAGCAGCCAGCCTTCTCCTCTTCATCCTCTGGTCATTGCGGACCTTCCTCTGCCTATATAATAAATTCCTTCGCTCCTTAGATCTAGAAATGGCATCTCGAATTCCAACTTTATCCATGTCGCCATGTGGCCATAAGTTAGCAAGCTCTAGATACAAC] [+] EMBL CB673737 [TATAAATACACCTTATCCTTAAAAGTCAACAAGATCTTCAAGAATTAGTGGTTGCTCAGAAGCCAACAAATAGGCTCCGAGAGCATCCCCCTAACAATCACCTAGCTAGTGTGTTCTACTATATTGGTTATCAACGACCTTTGCCGATGATTTATTTTGTTCTCCAAAGCTATGCCAGCACGATCAGGACGTTAGCTGCTGCTGGGGCGACTGTCGCTGCTTGGAATGGCAAGCAGCGTCTGGGGAAGGTTACTGACCTTTGTTGCCTCATCTGCACGCTTTGCCGGCTTCTGTATTTCAATACCATGATGATGAAGTTCAGCAGTAGCCTTCGGTGGGTTAACTTGCCTATCTTCAGAGTCTATTTTTCGTTTCTTCATGCTGGTAGAACTCCTGTTGCCATCCGATCCTGCACCGACGCTCATTTCATTAACTTTGTCGACACTTCTGCTACTCTGACTATTTCCATTGTTAACCACAGGATACATGGTATGGGTGCTTGTCATATTTTGCAGGGACTGTGCAGATTGTGGGGCGGCAGGGTCGCTGTCACGCAACTTGGCAGCAGCAGCCAGCCTTCTCCTCTTCATCCTCTGGTCATTGCGGACCTTCCTCTGCCTATATAATAAATTCCTTCGCTCCTTAGATCTAGAAATGGCATCTCGAATTCCAACTTTATCCATGTCGCCATGTGGCCATAAGTTAGCAAGCTCTAGATACAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3736#0 GTTACAGAGGGTTCTTATAAATACACCTTATTTTTAGTATCAAACAAGATCTTCAAGAAT 60 consensus_3736#1 ---------------TATAAATACACCTTATCCTTAAAAGTCAACAAGATCTTCAAGAAT 45 **************** *** * ****************** consensus_3736#0 TAGTGGTTGCTCAGAAGCCAACAAATAGGCTCCGAGAGCATCCCAGTAGCAATCACCTAG 120 consensus_3736#1 TAGTGGTTGCTCAGAAGCCAACAAATAGGCTCCGAGAGCATCCCCCTAACAATCACCTAG 105 ******************************************** ** *********** consensus_3736#0 CTAGTGTGTTCTACTATATTGGTTATCAACGACCTTTGCCGATGATTTATTTTGTTCTCC 180 consensus_3736#1 CTAGTGTGTTCTACTATATTGGTTATCAACGACCTTTGCCGATGATTTATTTTGTTCTCC 165 ************************************************************ consensus_3736#0 AAAGCTATGCCAGCACGATCAGGACGTTAGCTGCTGCTGGGGCGACTGTCGCTGCTTGGA 240 consensus_3736#1 AAAGCTATGCCAGCACGATCAGGACGTTAGCTGCTGCTGGGGCGACTGTCGCTGCTTGGA 225 ************************************************************ consensus_3736#0 ATGGCAAGCAGCGTCTGGGGAAGGTTACTGACCTTTGTTGCCTCATCTGCACGCTTTGCC 300 consensus_3736#1 ATGGCAAGCAGCGTCTGGGGAAGGTTACTGACCTTTGTTGCCTCATCTGCACGCTTTGCC 285 ************************************************************ consensus_3736#0 GGCTTCTGTATTTCAATACCATGATGATGAAGTTCAGCAGTAGCCTTCGGTGGGTTAACT 360 consensus_3736#1 GGCTTCTGTATTTCAATACCATGATGATGAAGTTCAGCAGTAGCCTTCGGTGGGTTAACT 345 ************************************************************ consensus_3736#0 TGCCTATCTTCGGAGTCTATTTTTCGTTTCTTCATGCTGGTAGAACTCCTGTTGCCATCC 420 consensus_3736#1 TGCCTATCTTCAGAGTCTATTTTTCGTTTCTTCATGCTGGTAGAACTCCTGTTGCCATCC 405 *********** ************************************************ consensus_3736#0 GATCCTGCACCGACGCTCATTTCATTAACTTTGTCGACACTTCTGCTACTCTGACTATTT 480 consensus_3736#1 GATCCTGCACCGACGCTCATTTCATTAACTTTGTCGACACTTCTGCTACTCTGACTATTT 465 ************************************************************ consensus_3736#0 CCATTGTTAACCACAGGATACATGGTATGGGTGCTTGTCATATTTTGCAGGGACTGTGCA 540 consensus_3736#1 CCATTGTTAACCACAGGATACATGGTATGGGTGCTTGTCATATTTTGCAGGGACTGTGCA 525 ************************************************************ consensus_3736#0 GATTGTGGGGCGGCAGGGTCGCTGTCACGCAACTTGGCAGCAGCAGCCAGCCTTCTC--- 597 consensus_3736#1 GATTGTGGGGCGGCAGGGTCGCTGTCACGCAACTTGGCAGCAGCAGCCAGCCTTCTCCTC 585 ********************************************************* consensus_3736#0 TTCATCCTCTGGTCATTGCGGACCTGAATGGCATGATTGGTTTAAATGAGGTACTATAAA 657 consensus_3736#1 TTCATCCTCTGGTCATTGCGGACCT--------TCCTCTGCCTATATAATAAATTCCTTC 637 ************************* * * * ** ** * * * consensus_3736#0 ATAGGATAATTTGGAAATTTACATTACTGAATTGTACACTTGTTTTCCTTCACTCCATAT 717 consensus_3736#1 GCTCCTTAGATCTAGAAATGGCATC-TCGAATTCCA-ACTT--TATCCATGTCGCCATGT 693 ** * ** * *** ***** * **** * *** * * **** * consensus_3736#0 GATTATGACGGTTAAAAATAAAGACATGGTTAAGCTAAAATGGCATTCACGCCTTAAGAG 777 consensus_3736#1 GGCCATAAGTTAGCAAGCTCTAGATACAAC------------------------------ 723 * ** * ** * *** * consensus_3736#0 AAGATCTTTCACCTTCCT 795 consensus_3736#1 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||