Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3750 cluster # 3750       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3750#0 length = 2224 sequences # 2  

consensusID : consensus_3750#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2224
fasta sequence
                              [GGGGAGGTGGCCGTGGCGGCCCGTGTGGTGAAGGTGGATGGGGGGAAGGTTGTGGTGGCCATGGATGAGGATGCCGCTGCAGGAGGTGGCGTCGGAGTCGGAGTGGTGAGCGATTTGCTGTACGCGACGGGATCGGCGGCAGTGGGTGAAGGATACGGGGGTGAGTGTACTGACAACATGCAGGAGCTGCTGGATGGAGGTGGTGCAGAGGAGAGGATGTTGGGAGTGGAACTCGGTGGCTTTCGTGGTGAGGCAGGGTGGACGCTTATGCCGGTAGGAGATGCTGCTATAGAGACTTCAGAGGAAATGTCTGATCCTGTCACACTGCAATACTCTGAAACAGGGCTCACAGGGGATGATCAGCGTGCCAAATACCGCCTCCCTCCTCTTGACGGATATGGTTTTCGAGCATCTGGTCTTGTGTGGAGTAAATTGAAAGGTCATCCTTGGTGGCCTGGTGAGATATTTGATACTTCAGATGCATCTGAGTTGGCACTGAAACACCAGAAGAAGAAGGGCAGTCATTTGGTAGCATATTTCGGTAGCAATACTTTTGCATGGTGTGATGAATCCCAGTTGAAGCCTTTCATGTCAAACTATTCTCAAATGGCGAATCAGAGCAATTCTGATGCCTTCATTAGTTCAGTTAACCTTGCTCTTGAAGAAATCTCAAGGCGGATATTGTCAGGGATGTGTTGCTTTTGTCTTCCAGAAGATCTCTCTGACAATTGCATGTCTTACATGGTTGAGAATTCTGGGCTCAGGGATGGAGTTACTTGCTCTAAAGTTACACGGTCAGAGATCTTGGAATGTTTCAATGCAGAAAATTTTCTAAGTTATCTCAGGTCATTGGCTCTGTTCCCTGGTCAAGGAGGTGAGCTGCTGGATTTAGTGATAGCATGCTCTCAACTTACATCTTTCTTTCAATCTAAGGGATGCCATGAACTTGCATCATTTGGAAGTGGCAGTGAGTTGGTTGATGATGGCATGGACTCTTCTTCCACCAAGAATGTCTTGTTGCCAGAAGCTGTCACCTATGAACAGAAACCTAGTGAAGGTAAGCCCAAAAGACGTAGGATAAAAACTTGTGTTAAAAAACCTCAGAATGATTTAGAGTTGACAGAGGAAAATCCCATATCCAGTTTGAACAATGAGTGCACTTTTGTTGATTGCATGGGCTTGAACATCATTGGGAAAGTTAAAGGGAAGAGAAGTGAAAAGAGGAGAAAATATGTGCCTTCTCCTGAGGTACATACAACTGATCATGGGCAGGACGACTCCTGGTCTGGATTCTGTTTAAACAATGATCCAACTGATACCCTCGGGGAAGCAAGTGCCAAAATGAGGCCAAGACGTAAGCAGAGATCATCGAAAGAAACATGTGCACCTTCATCAGATCTCTCTTCCCATGTACCACCTCTGCAACTTGGATTGCTTGGTCCTAAGAAACAGATACAACTGATAGAAAGATAAATTATCCATGCCGATGAACAGAGAATTGATGAGATCATGCCCTCCGCACTTGTTTTGAGTTTTGGCAGATCAGCTGCTCTTCCCTCAAAATTGGATCTTATTAGGTTGTTCAGTCGCTATGGACCTCTGAAAGAAAATGAGACTGAAGTTCACCAGAACACGAATACTGTTAAAGTTGCCTTCAAGAGACGTTTTGATGCTGCAAACGCTTTCAGTGTTGTTGGCAAGTATAGCTATTTTGGACCTTCGCTTTGTAGTTTTCGGCTTGTAAATTTGCCATTTTCCCTATCCAAGTTAAGCCCTGAAGATCCTGGCACGGAGGTTCCTGCTTGTAGGGAGTCTGGAGTGGATATTGTGCATGTTGGCATCATCAGCAAAGTTGATAAAGCTCAAAATCTGTAGAGAAAGCATCAGCGTTTGATATGGTCGATCCAGCAGGGCGAGCTAACAAAATTGTAGGTGAGGGCACGGCTGAAGAATCAGATGAGAAAATCAGTTAGCTTTTCTTCCATTAAAACTTGTTTATATTCAGGTTTGTCTGCTAGATGAAAGTGTTGTCTCATCCGGGTGATGCATTTTGTATAGAAAACGGGAATCCGACACTAGTATTAAAATGTTAGTCTTCAGTAACTAGAGCATGTATATAGTCATGCTTTTTCTGTACAAACTTAAGGTAAACCACTGTCCGTTTATGGCAATTAGATATCCTTCTGACCATATTAAGATTAAATCAAGTAGGGGAACCCTTGGT]

[+] EMBL AK100354             [GGGGAGGTGGCCGTGGCGGCCCGTGTGGTGAAGGTGGATGGGGGGAAGGTTGTGGTGGCCATGGATGAGGATGCCGCTGCAGGAGGTGGCGTCGGAGTCGGAGTGGTGAGCGATTTGCTGTACGCGACGGGATCGGCGGCAGTGGGTGAAGGATACGGGGGTGAGTGTACTGACAACATGCAGGAGCTGCTGGATGGAGGTGGTGCAGAGGAGAGGATGTTGGGAGTGGAACTCGGTGGCTTTCGTGGTGAGGCAGGGTGGACGCTTATGCCGGTAGGAGATGCTGCTATAGAGACTTCAGAGGAAATGTCTGATCCTGTCACACTGCAATACTCTGAAACAGGGCTCACAGGGGATGATCAGCGTGCCAAATACCGCCTCCCTCCTCTTGACGGATATGGTTTTCGAGCATCTGGTCTTGTGTGGAGTAAATTGAAAGGTCATCCTTGGTGGCCTGGTGAGATATTTGATACTTCAGATGCATCTGAGTTGGCACTGAAACACCAGAAGAAGAAGGGCAGTCATTTGGTAGCATATTTCGGTAGCAATACTTTTGCATGGTGTGATGAATCCCAGTTGAAGCCTTTCATGTCAAACTATTCTCAAATGGCGAATCAGAGCAATTCTGATGCCTTCATTAGTTCAGTTAACCTTGCTCTTGAAGAAATCTCAAGGCGGATATTGTCAGGGATGTGTTGCTTTTGTCTTCCAGAAGATCTCTCTGACAATTGCATGTCTTACATGGTTGAGAATTCTGGGCTCAGGGATGGAGTTACTTGCTCTAAAGTTACACGGTCAGAGATCTTGGAATGTTTCAATGCAGAAAATTTTCTAAGTTATCTCAGGTCATTGGCTCTGTTCCCTGGTCAAGGAGGTGAGCTGCTGGATTTAGTGATAGCATGCTCTCAACTTACATCTTTCTTTCAATCTAAGGGATGCCATGAACTTGCATCATTTGGAAGTGGCAGTGAGTTGGTTGATGATGGCATGGACTCTTCTTCCACCAAGAATGTCTTGTTGCCAGAAGCTGTCACCTATGAACAGAAACCTAGTGAAGGTAAGCCCAAAAGACGTAGGATAAAAACTTGTGTTAAAAAACCTCAGAATGATTTAGAGTTGACAGAGGAAAATCCCATATCCAGTTTGAACAATGAGTGCACTTTTGTTGATTGCATGGGCTTGAACATCATTGGGAAAGTTAAAGGGAAGAGAAGTGAAAAGAGGAGAAAATATGTGCCTTCTCCTGAGGTACATACAACTGATCATGGGCAGGACGACTCCTGGTCTGGATTCTGTTTAAACAATGATCCAACTGATACCCTCGGGGAAGCAAGTGCCAAAATGAGGCCAAGACGTAAGCAGAGATCATCGAAAGAAACATGTGCACCTTCATCAGATCTCTCTTCCCATGTACCACCTCTGCAACTTGGATTGCTTGGTCCTAAGAAACAGATACAACTGATAGAAAGATAAATTATCCATGCCGATGAACAGAGAATTGATGAGATCATGCCCTCCGCACTTGTTTTGAGTTTTGGCAGATCAGCTGCTCTTCCCTCAAAATTGGATCTTATTAGGTTGTTCAGTCGCTATGGACCTCTGAAAGAAAATGAGACTGAAGTTCACCAGAACACGAATACTGTTAAAGTTGCCTTCAAGAGACGTTTTGATGCTGCAAACGCTTTCAGTGTTGTTGGCAAGTATAGCTATTTTGGACCTTCGCTTTGTAGTTTTCGGCTTGTAAATTTGCCATTTTCCCTATCCAAGTTAAGCCCTGAAGATCCTGGCACGGAGGTTCCTGCTTGTAGGGAGTCTGGAGTGGATATTGTGCATGTTGGCATCATCAGCAAAGTTGATAAAGCTCAAAATCTGTAGAGAAAGCATCAGCGTTTGATATGGTCGATCCAGCAGGGCGAGCTAACAAAATTGTAGGTGAGGGCACGGCTGAAGAATCAGATGAGAAAATCAGTTAGCTTTTCTTCCATTAAAACTTGTTTATATTCAGGTTTGTCTGCTAGATGAAAGTGTTGTCTCATCCGGGTGATGCATTTTGTATAGAAAACGGGAATCCGACACTAGTATTAAAATGTTAGTCTTCAGTAACTAGAGCATGTATATAGTCATGCTTTTTCTGTACAAACTTAAGGTAAACCACTGTCCGTTTATGGCAATTAGATATCCTTCTGACCATATTAAGATTAAATCAAGTAGGGGAACCCTTGGT]
[+] EMBL CF303223             [                                                                        cacgagGCAGGAGGTGGCGTCGGAGTCGGAGTGGTGAGCGATTTGCTGTACGCGACGGGATCGGCGGCAGTGGGTGAAGGATACGGGGGTGAGTGTACTGACAACATGCAGGAGCTGCTGGATGGAGGTGGTGCAGAGGAGAGGATGTTGGGAGTGGAACTCGGTGGCTTTCGTGGTGAGGCAGGGTGGACGCTTATGCCGGTAGGAGATGCTGCTATAGAGACTTCAGAGGAAATGTCTGATCCTGTCACACTGCAATACTCTGAAACAGGGCTCACAGGGGATGATCAGCGTGCCAAATACCGCCTCCCTCCTCTTGACGGATATGGTTTTCGAGCATCTGGTCTTGTGTGGAGTAAATTGAAAGGTCATCCTTGGTGGCCTGGTGAGATATTTGATACTTCAGATGCATCTGAGTTGGCACTGAAACACCAGAAGAAGAAGGGCAGTCATTTGGTAGCATATTTCGGTAGCAATACTTTTGCATGGTGTGATGAATCCCAGTTGAAGCCTTTCATGTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]


>consensus_3750#0 GGGGAGGTGGCCGTGGCGGCCCGTGTGGTGAAGGTGGATGGGGGGAAGGTTGTGGTGGCC ATGGATGAGGATGCCGCTGCAGGAGGTGGCGTCGGAGTCGGAGTGGTGAGCGATTTGCTG TACGCGACGGGATCGGCGGCAGTGGGTGAAGGATACGGGGGTGAGTGTACTGACAACATG CAGGAGCTGCTGGATGGAGGTGGTGCAGAGGAGAGGATGTTGGGAGTGGAACTCGGTGGC TTTCGTGGTGAGGCAGGGTGGACGCTTATGCCGGTAGGAGATGCTGCTATAGAGACTTCA GAGGAAATGTCTGATCCTGTCACACTGCAATACTCTGAAACAGGGCTCACAGGGGATGAT CAGCGTGCCAAATACCGCCTCCCTCCTCTTGACGGATATGGTTTTCGAGCATCTGGTCTT GTGTGGAGTAAATTGAAAGGTCATCCTTGGTGGCCTGGTGAGATATTTGATACTTCAGAT GCATCTGAGTTGGCACTGAAACACCAGAAGAAGAAGGGCAGTCATTTGGTAGCATATTTC GGTAGCAATACTTTTGCATGGTGTGATGAATCCCAGTTGAAGCCTTTCATGTCAAACTAT TCTCAAATGGCGAATCAGAGCAATTCTGATGCCTTCATTAGTTCAGTTAACCTTGCTCTT GAAGAAATCTCAAGGCGGATATTGTCAGGGATGTGTTGCTTTTGTCTTCCAGAAGATCTC TCTGACAATTGCATGTCTTACATGGTTGAGAATTCTGGGCTCAGGGATGGAGTTACTTGC TCTAAAGTTACACGGTCAGAGATCTTGGAATGTTTCAATGCAGAAAATTTTCTAAGTTAT CTCAGGTCATTGGCTCTGTTCCCTGGTCAAGGAGGTGAGCTGCTGGATTTAGTGATAGCA TGCTCTCAACTTACATCTTTCTTTCAATCTAAGGGATGCCATGAACTTGCATCATTTGGA AGTGGCAGTGAGTTGGTTGATGATGGCATGGACTCTTCTTCCACCAAGAATGTCTTGTTG CCAGAAGCTGTCACCTATGAACAGAAACCTAGTGAAGGTAAGCCCAAAAGACGTAGGATA AAAACTTGTGTTAAAAAACCTCAGAATGATTTAGAGTTGACAGAGGAAAATCCCATATCC AGTTTGAACAATGAGTGCACTTTTGTTGATTGCATGGGCTTGAACATCATTGGGAAAGTT AAAGGGAAGAGAAGTGAAAAGAGGAGAAAATATGTGCCTTCTCCTGAGGTACATACAACT GATCATGGGCAGGACGACTCCTGGTCTGGATTCTGTTTAAACAATGATCCAACTGATACC CTCGGGGAAGCAAGTGCCAAAATGAGGCCAAGACGTAAGCAGAGATCATCGAAAGAAACA TGTGCACCTTCATCAGATCTCTCTTCCCATGTACCACCTCTGCAACTTGGATTGCTTGGT CCTAAGAAACAGATACAACTGATAGAAAGATAAATTATCCATGCCGATGAACAGAGAATT GATGAGATCATGCCCTCCGCACTTGTTTTGAGTTTTGGCAGATCAGCTGCTCTTCCCTCA AAATTGGATCTTATTAGGTTGTTCAGTCGCTATGGACCTCTGAAAGAAAATGAGACTGAA GTTCACCAGAACACGAATACTGTTAAAGTTGCCTTCAAGAGACGTTTTGATGCTGCAAAC GCTTTCAGTGTTGTTGGCAAGTATAGCTATTTTGGACCTTCGCTTTGTAGTTTTCGGCTT GTAAATTTGCCATTTTCCCTATCCAAGTTAAGCCCTGAAGATCCTGGCACGGAGGTTCCT GCTTGTAGGGAGTCTGGAGTGGATATTGTGCATGTTGGCATCATCAGCAAAGTTGATAAA GCTCAAAATCTGTAGAGAAAGCATCAGCGTTTGATATGGTCGATCCAGCAGGGCGAGCTA ACAAAATTGTAGGTGAGGGCACGGCTGAAGAATCAGATGAGAAAATCAGTTAGCTTTTCT TCCATTAAAACTTGTTTATATTCAGGTTTGTCTGCTAGATGAAAGTGTTGTCTCATCCGG GTGATGCATTTTGTATAGAAAACGGGAATCCGACACTAGTATTAAAATGTTAGTCTTCAG TAACTAGAGCATGTATATAGTCATGCTTTTTCTGTACAAACTTAAGGTAAACCACTGTCC GTTTATGGCAATTAGATATCCTTCTGACCATATTAAGATTAAATCAAGTAGGGGAACCCT TGGT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)