These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3752#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1740 fasta sequence [ACACCCTTCCGATCCACCCTCGCATCACTCTTCCAGCCTCCCCTCCCCCCAACTCCGGCGATGGCCGGCCGCCTCCCCGGCGCCGCCTCCGCCGCCGCGGCGCCCCTCCCCCGAGCGCTCCTGCTACTCGCCGCCCTCGCCCTATTCTCCCTCACCTTCCTCTCCCTCCGCTCGCTCCGCCCCGCCGCGGCCCCACCCTCCCTCGCCATCGGCGGCTCCCGCCCTTCCTCCTTCGCGCGGCCGTCGGTGTACCACTCCGCCGAGGCCTTCGCGGCGGGGTACGCGGAGATGGAGCGGAGCTTCAAGGTGTACATGTACCCGGACGGCGACCCCAAGACGTTCTACCAGACGCCGCGGAAGCTCACGGGGAAGTACGCCAGCGAGGGCTACTTCTTCCAGAACATCCGCGAGAGCCGCTTCCGCACCGGCGACCCCGACAAGGCGCACCTCTTCTTCGTCCCCATCTCCCCCCACAAGATGCGCGGCAAGGGTACTTCATATGAGAACATGACAATAATAGTTAAGGATTATGTGGAAGGCTTGATAAACAAGTATCCTTACTGGAACAGGACACTTGGAGCGGACCATTTCTTTGTCACCTGCCATGATGTAGGTGTTAGGGCTTTTGAAGGACTTCCATTCATGGTGAAGAATTCTATTAGAGTTGTCTGTTCTCCAAGCTATAATGTTGACTTTATACCGCATAAGGATATCGCTCTTCCTCAAGTATTGCAGCCATTTGCTCTGCCTGAAGGAGGAAATGATGTTGAGAACAGGACAATCCTTGGATTTTGGGCTGGCCATCGCAATTCTAAAATAAGAGTCATTTTGGCACAAGTCTGGGAGAATGATACAGAGCTTGCTATCAGTAACAATCGGATCAGTAGAGCTATTGGAGAGCTGGTTTACCAGAAGCAGTTCTACCACACAAAGTTCTGTATTTGTCCTGGTGGCTCTCAAGTTAATAGTGCCCGTATATCTGATTCAATACACTACGGTTGTGTTCCTGTTATTTTGTCAGACTACTACGATTTGCCTTTCAATGATATCCTAGACTGGAGAAAATTTGCTGTTGTACTTAAGGAGCGTGATGTATATCAACTAAAAAGTATACTTAAATCTATATCACAGGAAGAGTTTGTTGAATTGCACAAATCTCTTGTTCAGGTACAGAAACACTTTGTGTGGCATTCACCTCCTCTTCCTTACGACGCGTTCCACATGGTTATGTATGAACTATGGTTGCGACATCATGTGATCAAGTACTAAATTCAACCATCCAAGTCTGGGCAGATACAAACATGAAAGCCTTATCCGTATGAATATGATGCGGAGTCTGACAACTATCCGGTGCTCTACTGAACATGCATTCATTCTTATGCTCATATATCAGCAACTGGATGGATCATTGTGCGTAGGTGTCATCTTGAGCATCTGCATCAGAGAAGTTGGCGACCATCGACCATAAATCATCAAAATGGAGTTGCTAGGTAATAGACTGATTAGTTCATTCTTTCAAGAATAGTTTTGTTTTTCCGCCATATTGCACTCTTTGTAAGCTGCGTTTTCTAGTTTGCCTGTGATACGGTATCCTTTACGGATCTGCCCATTTCTTACTCATGTAAAGTAATGTACGATGTTACTAACAAGACAGAGAACTGAACCAAGTAGGAGTAGAATATTGTTGTGATCAGCAAACTTTCAGGGGTTAATTTCACCATGCACCATGCGATCTATGGA] [+] EMBL AK065525 [ACACCCTTCCGATCCACCCTCGCATCACTCTTCCAGCCTCCCCTCCCCCCAACTCCGGCGATGGCCGGCCGCCTCCCCGGCGCCGCCTCCGCCGCCGCGGCGCCCCTCCCCCGAGCGCTCCTGCTACTCGCCGCCCTCGCCCTATTCTCCCTCACCTTCCTCTCCCTCCGCTCGCTCCGCCCCGCCGCGGCCCCACCCTCCCTCGCCATCGGCGGCTCCCGCCCTTCCTCCTTCGCGCGGCCGTCGGTGTACCACTCCGCCGAGGCCTTCGCGGCGGGGTACGCGGAGATGGAGCGGAGCTTCAAGGTGTACATGTACCCGGACGGCGACCCCAAGACGTTCTACCAGACGCCGCGGAAGCTCACGGGGAAGTACGCCAGCGAGGGCTACTTCTTCCAGAACATCCGCGAGAGCCGCTTCCGCACCGGCGACCCCGACAAGGCGCACCTCTTCTTCGTCCCCATCTCCCCCCACAAGATGCGCGGCAAGGGTACTTCATATGAGAACATGACAATAATAGTTAAGGATTATGTGGAAGGCTTGATAAACAAGTATCCTTACTGGAACAGGACACTTGGAGCGGACCATTTCTTTGTCACCTGCCATGATGTAGGTGTTAGGGCTTTTGAAGGACTTCCATTCATGGTGAAGAATTCTATTAGAGTTGTCTGTTCTCCAAGCTATAATGTTGACTTTATACCGCATAAGGATATCGCTCTTCCTCAAGTATTGCAGCCATTTGCTCTGCCTGAAGGAGGAAATGATGTTGAGAACAGGACAATCCTTGGATTTTGGGCTGGCCATCGCAATTCTAAAATAAGAGTCATTTTGGCACAAGTCTGGGAGAATGATACAGAGCTTGCTATCAGTAACAATCGGATCAGTAGAGCTATTGGAGAGCTGGTTTACCAGAAGCAGTTCTACCACACAAAGTTCTGTATTTGTCCTGGTGGCTCTCAAGTTAATAGTGCCCGTATATCTGATTCAATACACTACGGTTGTGTTCCTGTTATTTTGTCAGACTACTACGATTTGCCTTTCAATGATATCCTAGACTGGAGAAAATTTGCTGTTGTACTTAAGGAGCGTGATGTATATCAACTAAAAAGTATACTTAAATCTATATCACAGGAAGAGTTTGTTGAATTGCACAAATCTCTTGTTCAGGTACAGAAACACTTTGTGTGGCATTCACCTCCTCTTCCTTACGACGCGTTCCACATGGTTATGTATGAACTATGGTTGCGACATCATGTGATCAAGTACTAAATTCAACCATCCAAGTCTGGGCAGATACAAACATGAAAGCCTTATCCGTATGAATATGATGCGGAGTCTGACAACTATCCGGTGCTCTACTGAACATGCATTCATTCTTATGCTCATATATCAGCAACTGGATGGATCATTGTGCGTAGGTGTCATCTTGAGCATCTGCATCAGAGAAGTTGGCGACCATCGACCATAAATCATCAAAATGGAGTTGCTAGGTAATAGACTGATTAGTTCATTCTTTCAAGAATAGTTTTGTTTTTCCGCCATATTGCACTCTTTGTAAGCTGCGTTTTCTAGTTTGCCTGTGATACGGTATCCTTTACGGATCTGCCCATTTCTTACTCATGTAAAGTAATGTACGATGTTACTAACAAGACAGAGAACTGAACCAAGTAGGAGTAGAATATTGTTGTGATCAGCAAACTTTCAGGGGTTAATTTCACCATGCACCATGCGATCTATGGA] consensusID : consensus_3752#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence [ATGGCCAATCATTCTCCCCTAATCCCGCCGCCGCCGCGTCGGAGGTGTACCACTCCCCGGAGGAGGTCTCTGCTGGGGTACGGCAGAGATGGAGAGGAGCTTCAAGGTGTTCGTCTACCCCGACGGCGACCCCGGCACTGTTCTACCATACGCCGCGGAAGCTGACCGGCAAGTACGCCAGCGAGGGCTACTTCTTCCAGAACATTCGCGAGAGCCGCTTCCGCACCGACGACCTCGAGCAGGCGCACCTCTTCTTCGTCCCCATTTCTCCCCACAAGATGCGCGGCAAGGTCCCCAATTCTTTGCTACTCGTTACATATGCGTGGTTAATCTTGCATATTCGATCATATGATCGATCTATTTTGTTTCTTGATTTGTACTGGTGGTGTCCGCTTTGTTCATCATTTCGTGGTAAGCATGACAATTCAAGCAACGGATCAAGCGGACCTGTAATACTGGTAGGCTGGCACTACATTTTCAATTTGTGCAAACTCACTGAAGTATGAATGGATCATTTTTGAATTATACAAGAAATAGAATCTCATTATTGAAAAACTTTAAAGTGTTCCATTTGATTTCTGGGATTTAGCAAATTAATGGTGGATTCTTGGATTAAGGT] [+] EMBL CB632030 [ATGGCCAATCATTCTCCCCTAATCCCGCCGCCGCCGCGTCGGAGGTGTACCACTCCCCGGAGGAGGTCTCTGCTGGGGTACGGCAGAGATGGAGAGGAGCTTCAAGGTGTTCGTCTACCCCGACGGCGACCCCGGCACTGTTCTACCATACGCCGCGGAAGCTGACCGGCAAGTACGCCAGCGAGGGCTACTTCTTCCAGAACATTCGCGAGAGCCGCTTCCGCACCGACGACCTCGAGCAGGCGCACCTCTTCTTCGTCCCCATTTCTCCCCACAAGATGCGCGGCAAGGTCCCCAATTCTTTGCTACTCGTTACATATGCGTGGTTAATCTTGCATATTCGATCATATGATCGATCTATTTTGTTTCTTGATTTGTACTGGTGGTGTCCGCTTTGTTCATCATTTCGTGGTAAGCATGACAATTCAAGCAACGGATCAAGCGGACCTGTAATACTGGTAGGCTGGCACTACATTTTCAATTTGTGCAAACTCACTGAAGTATGAATGGATCATTTTTGAATTATACAAGAAATAGAATCTCATTATTGAAAAACTTTAAAGTGTTCCATTTGATTTCTGGGATTTAGCAAATTAATGGTGGATTCTTGGATTAAGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3752#0 ACACCCTTCCGATCCACCCTCGCATCACTCTTCCAGCCTCCCCTCCCCCCAACTCCGGCG 60 consensus_3752#1 ------------------------------------------------------------ consensus_3752#0 ATGGCCGGCCGCCTCCCCGGCGCCGCCTCCGCCGCCGCGGCGCCCCTCCCCCGAGCGCTC 120 consensus_3752#1 ------------------------------------------------------------ consensus_3752#0 CTGCTACTCGCCGCCCTCGCCCTATTCTCCCTCACCTTCCTCTCCCTCCGCTCGCTCCGC 180 consensus_3752#1 ------------------------------------------------------------ consensus_3752#0 CCCGCCGCGGCCCCACCCTCCCTCGCCATCGGCGGCTCCCGCCCTTCCTCCTTCGCGCGG 240 consensus_3752#1 ---------------------ATGGCCAATCATT-CTCCCCTAATCCCGCCGCCGCCGCG 38 * **** ***** * ** ** *** * consensus_3752#0 CCGTCGGTGTACCACTCCGCCGAGGCCTTCGCGGC-GGGGTACG-CGGAGATGGAGCGGA 298 consensus_3752#1 TCGGAGGTGTACCACTCCCCGGAGGAGGTCTCTGCTGGGGTACGGCAGAGATGGAGAGGA 98 ** ************* * **** ** * ** ******** * ********* *** consensus_3752#0 GCTTCAAGGTGTACATGTACCCGGACGGCGACCCCAAGAC-GTTCTACCAGACGCCGCGG 357 consensus_3752#1 GCTTCAAGGTGTTCGTCTACCCCGACGGCGACCCCGGCACTGTTCTACCATACGCCGCGG 158 ************ * * ***** ************ ** ********* ********* consensus_3752#0 AAGCTCACGGGGAAGTACGCCAGCGAGGGCTACTTCTTCCAGAACATCCGCGAGAGCCGC 417 consensus_3752#1 AAGCTGACCGGCAAGTACGCCAGCGAGGGCTACTTCTTCCAGAACATTCGCGAGAGCCGC 218 ***** ** ** *********************************** ************ consensus_3752#0 TTCCGCACCGGCGACCCCGACAAGGCGCACCTCTTCTTCGTCCCCATCTCCCCCCACAAG 477 consensus_3752#1 TTCCGCACCGACGACCTCGAGCAGGCGCACCTCTTCTTCGTCCCCATTTCTCCCCACAAG 278 ********** ***** *** ************************* ** ********* consensus_3752#0 ATGCGCGGCAAGGGTACTTCATATGAGAACATGACAATAATAGTTAAGGATTATGTGGAA 537 consensus_3752#1 ATGCGCGGCAAGGTCCCCAATTCTTTGCTACTCGTTACA-TATGCGTGGTTAATCTTGCA 337 ************* * * * * * * * ** ** * ** * * * consensus_3752#0 GGCTTGATAAACAAGT--ATCCTTACTGGAACAGGACACTTGGAGCGGACCATTTCTTTG 595 consensus_3752#1 TATTCGATCATATGATCGATCTATTTTGTTTCTTGATTTGTACTGGTGGTGTCCGCTTTG 397 * *** * * *** * ** * ** * * * ***** consensus_3752#0 TCACCTGCCATGATGTAGGTGTTAGGGCTTTTGAAGGACTTCCATTCATGGTGAAGAATT 655 consensus_3752#1 TTCATCATTTCGTGGTAAGCATGACAATTCAAGCAACGGATCAAGC--GGACCTGTAATA 455 * * *** * * * * * * ** * * *** consensus_3752#0 CTATTAGAGTTGT-CTGTTCTCCAAGCTATAATGTTGACTTTATACCGCATAAGGATATC 714 consensus_3752#1 CTGGTAGGCTGGCACTACATTTTCAATTT--GTGCAAACTCACTGAAGTATGAATGGATC 513 ** *** * * ** * * * ** *** * * ** * *** consensus_3752#0 GCTCTTCCTCAAGTATTGCAGCCATTTGCTCTGCCTGAAGGAGGAAATGATGTTGAGAAC 774 consensus_3752#1 ATTTT---TGAATTATACAAGAAATAGAATCTCATTATTGAA--AAACTTTAAAGTGTTC 568 * * * ** *** ** ** *** * * * *** * * * * consensus_3752#0 AGGACAATCCTTGGATTTTGGGCTGGCCATCGCA-ATTCTAAAATAAGAGTCATTTTGGC 833 consensus_3752#1 CATTTGATTTCTGGGATTTAGCAAATTAATGGTGGATTCTTGGATTAAGGT--------- 619 ** *** *** * ** * ***** ** * ** consensus_3752#0 ACAAGTCTGGGAGAATGATACAGAGCTTGCTATCAGTAACAATCGGATCAGTAGAGCTAT 893 consensus_3752#1 ------------------------------------------------------------ consensus_3752#0 TGGAGAGCTGGTTTACCAGAAGCAGTTCTACCACACAAAGTTCTGTATTTGTCCTGGTGG 953 consensus_3752#1 ------------------------------------------------------------ consensus_3752#0 CTCTCAAGTTAATAGTGCCCGTATATCTGATTCAATACACTACGGTTGTGTTCCTGTTAT 1013 consensus_3752#1 ------------------------------------------------------------ consensus_3752#0 TTTGTCAGACTACTACGATTTGCCTTTCAATGATATCCTAGACTGGAGAAAATTTGCTGT 1073 consensus_3752#1 ------------------------------------------------------------ consensus_3752#0 TGTACTTAAGGAGCGTGATGTATATCAACTAAAAAGTATACTTAAATCTATATCACAGGA 1133 consensus_3752#1 ------------------------------------------------------------ consensus_3752#0 AGAGTTTGTTGAATTGCACAAATCTCTTGTTCAGGTACAGAAACACTTTGTGTGGCATTC 1193 consensus_3752#1 ------------------------------------------------------------ consensus_3752#0 ACCTCCTCTTCCTTACGACGCGTTCCACATGGTTATGTATGAACTATGGTTGCGACATCA 1253 consensus_3752#1 ------------------------------------------------------------ consensus_3752#0 TGTGATCAAGTACTAAATTCAACCATCCAAGTCTGGGCAGATACAAACATGAAAGCCTTA 1313 consensus_3752#1 ------------------------------------------------------------ consensus_3752#0 TCCGTATGAATATGATGCGGAGTCTGACAACTATCCGGTGCTCTACTGAACATGCATTCA 1373 consensus_3752#1 ------------------------------------------------------------ consensus_3752#0 TTCTTATGCTCATATATCAGCAACTGGATGGATCATTGTGCGTAGGTGTCATCTTGAGCA 1433 consensus_3752#1 ------------------------------------------------------------ consensus_3752#0 TCTGCATCAGAGAAGTTGGCGACCATCGACCATAAATCATCAAAATGGAGTTGCTAGGTA 1493 consensus_3752#1 ------------------------------------------------------------ consensus_3752#0 ATAGACTGATTAGTTCATTCTTTCAAGAATAGTTTTGTTTTTCCGCCATATTGCACTCTT 1553 consensus_3752#1 ------------------------------------------------------------ consensus_3752#0 TGTAAGCTGCGTTTTCTAGTTTGCCTGTGATACGGTATCCTTTACGGATCTGCCCATTTC 1613 consensus_3752#1 ------------------------------------------------------------ consensus_3752#0 TTACTCATGTAAAGTAATGTACGATGTTACTAACAAGACAGAGAACTGAACCAAGTAGGA 1673 consensus_3752#1 ------------------------------------------------------------ consensus_3752#0 GTAGAATATTGTTGTGATCAGCAAACTTTCAGGGGTTAATTTCACCATGCACCATGCGAT 1733 consensus_3752#1 ------------------------------------------------------------ consensus_3752#0 CTATGGA 1740 consensus_3752#1 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||