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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3760#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1902 fasta sequence
[AAGAAGAAGAAGAAGAGAGAAAATGGCGATTACCCCCGTCGATTCCCCCTCCCCTCCATCTCCGATCAGCAGAGCCAACCTGCACTTCTCCCGCCTCCTCGCGCTCCCGGCCGGTGACGGCGAGCTGGCTCTCGGTGTTAACACGGCGACCCCCCACCCTAGCATCCTCCTGTGTGTGCGGCCTCCTTGCGAGCAGGTCTGGAGCGGCGGCGCGCGCGGCCGGCCCCCCATCTCGGTCCTCGAATCGAATCGGAGATAGTACTTCAGTTTGGAAAAATGTCAGGAGATTAAAATTGGTGGAAGCCACTTGGCGCAAGTGCTACTCTTCACTCTTCAGTCACTGAATAATGAAGTATCCCTGTACAATGAAAAGGTATTTCTGGCATTTTATGATGAGAGGATAATCACCTTTTTTCAGGAATAAGTAAAAGATTTGGGCATCATTGCATCAAGCCGAACAAAAAGGTTTATAAAACATCAAACACATCCTGTGTGTTGAGCACAATGGTCAAACGACTGGAACAAAGGAAAAAAAAACCGACAATTCGACCTAAGCTACTGACAGAAACTAAGGAATCAGACTACTAAATGAGGCAAGCTCTTACTGTGCGACCCACTAATTCGCTTCTTCTGCAATTGACGCAATGATCCAAGAACAAGCACTTTTGCAGAAGTGGAGGTGAGACATCTTTGCAGGGGTTGGCCTGTTGACAGGAAGCCTATTGAGTTTACAAAATGGTGGCATGGTGTAATGTTGTAATATTTTGCTACTCACTTCAGTTTGCAGTTAATGAGTTTTGGAGTAATCATAGCATTAGCCAAATGTTTTCTGACATAGCAAAGGTCTCCAAGGTCTCAGGCTCTCAGCTTACCATGGCAGACCTGGTCTTACTGATTGTGCACTATTTCCTCATAGATATTCCCCTTCTAGCAGTAATAGCATAATTCCCTTCTTTCTGTGGAATTTCGTATGTTCAAATTATTTCAATATTGCCTCAGTTTTATACTTTGCTGGTGTTAATTGCTACTGAACTACTGATAATATTGGAAAACCTGGCCTTATATGGAATTACTGAAGTACCTTCCCTTCGATCTCAGTTTACCATGGGAGACCTGGCCTTACTAGATTGTGTACTAGTTTCTGGTCATAGATGTTCCCCTTTTATGGGCAGTACCTTACTAATAATCCCTTTTCTTTCCTTTTGACACTGACAGTCTTTAAATTACTTCAATACTAACGAATTTGCTAGTGCTAATTGGTACTGACAATGTTGGAAAACCGCAGCAGTAATTGGTGTGGCATGTTCTGCCTGAGATGTTCAGTTAATAACGTTGTTCCAGTCTACTTTGTTACACTCAGATTGCCTTTTTGTTTGTTTTACTTTAGGTAGTACTTCAGTTTGCAAAAGACGATGATATTGGATTTGGTGGAAGTCACTCGGCACAAGTGCTGCTGTCAAGAGACAGGAAGCTGACCCCTGTACAATGTAAAGTCATTGCTGCCATGCACAGGAATCCTGTGCATATATGATCCAAGATGCAACACTTTCGCACAAGCGGAGATCAGGATTCAGGAGATAAGTTCAGCTTACTGAAGACCTGCTGAGTTCAGCTTGAAGTTGACAAGTTTTGCAGAAATAGCTGACTCTTTTTTCACATTGGAGCCTGTGAAACTGTTGTAAATTCTTGATGACGCTAGATCTTTTTGTTTTGTATATTCTTCAGTAAATGTAAATATAATGTAAGATGCACTTTTAAGTACGAATCCTGATATAAGGGGCACAGCAGCTCTGTTTTGCAGCTGCTAGTATGGTGGTCATGTAAATCGATGCAAGAAAAGCACCAGGGTGTCAGTGGCACTCGTGCTATAGTTGACATTTGCAGTTTAATAAAAAGATGAAA]
[+] EMBL AK106645 [AAGAAGAAGAAGAAGAGAGAAAATGGCGATTACCCCCGTCGATTCCCCCTCCCCTCCATCTCCGATCAGCAGAGCCAACCTGCACTTCTCCCGCCTCCTCGCGCTCCCGGCCGGTGACGGCGAGCTGGCTCTCGGTGTTAACACGGCGACCCCCCACCCTAGCATCCTCCTGTGTGTGCGGCCTCCTTGCGAGCAGGTCTGGAGCGGCGGCGCGCGCGGCCGGCCCCCCATCTCGGTCCTCGAATCGAATCGGAGATAGTACTTCAGTTTGGAAAAATGTCAGGAGATTAAAATTGGTGGAAGCCACTTGGCGCAAGTGCTACTCTTCACTCTTCAGTCACTGAATAATGAAGTATCCCTGTACAATGAAAAGGTATTTCTGGCATTTTATGATGAGAGGATAATCACCTTTTTTCAGGAATAAGTAAAAGATTTGGGCATCATTGCATCAAGCCGAACAAAAAGGTTTATAAAACATCAAACACATCCTGTGTGTTGAGCACAATGGTCAAACGACTGGAACAAAGGAAAAAAAAACCGACAATTCGACCTAAGCTACTGACAGAAACTAAGGAATCAGACTACTAAATGAGGCAAGCTCTTACTGTGCGACCCACTAATTCGCTTCTTCTGCAATTGACGCAATGATCCAAGAACAAGCACTTTTGCAGAAGTGGAGGTGAGACATCTTTGCAGGGGTTGGCCTGTTGACAGGAAGCCTATTGAGTTTACAAAATGGTGGCATGGTGTAATGTTGTAATATTTTGCTACTCACTTCAGTTTGCAGTTAATGAGTTTTGGAGTAATCATAGCATTAGCCAAATGTTTTCTGACATAGCAAAGGTCTCCAAGGTCTCAGGCTCTCAGCTTACCATGGCAGACCTGGTCTTACTGATTGTGCACTATTTCCTCATAGATATTCCCCTTCTAGCAGTAATAGCATAATTCCCTTCTTTCTGTGGAATTTCGTATGTTCAAATTATTTCAATATTGCCTCAGTTTTATACTTTGCTGGTGTTAATTGCTACTGAACTACTGATAATATTGGAAAACCTGGCCTTATATGGAATTACTGAAGTACCTTCCCTTCGATCTCAGTTTACCATGGGAGACCTGGCCTTACTAGATTGTGTACTAGTTTCTGGTCATAGATGTTCCCCTTTTATGGGCAGTACCTTACTAATAATCCCTTTTCTTTCCTTTTGACACTGACAGTCTTTAAATTACTTCAATACTAACGAATTTGCTAGTGCTAATTGGTACTGACAATGTTGGAAAACCGCAGCAGTAATTGGTGTGGCATGTTCTGCCTGAGATGTTCAGTTAATAACGTTGTTCCAGTCTACTTTGTTACACTCAGATTGCCTTTTTGTTTGTTTTACTTTAGGTAGTACTTCAGTTTGCAAAAGACGATGATATTGGATTTGGTGGAAGTCACTCGGCACAAGTGCTGCTGTCAAGAGACAGGAAGCTGACCCCTGTACAATGTAAAGTCATTGCTGCCATGCACAGGAATCCTGTGCATATATGATCCAAGATGCAACACTTTCGCACAAGCGGAGATCAGGATTCAGGAGATAAGTTCAGCTTACTGAAGACCTGCTGAGTTCAGCTTGAAGTTGACAAGTTTTGCAGAAATAGCTGACTCTTTTTTCACATTGGAGCCTGTGAAACTGTTGTAAATTCTTGATGACGCTAGATCTTTTTGTTTTGTATATTCTTCAGTAAATGTAAATATAATGTAAGATGCACTTTTAAGTACGAATCCTGATATAAGGGGCACAGCAGCTCTGTTTTGCAGCTGCTAGTATGGTGGTCATGTAAATCGATGCAAGAAAAGCACCAGGGTGTCAGTGGCACTCGTGCTATAGTTGACATTTGCAGTTTAATAAAAAGATGAAA]
consensusID : consensus_3760#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence
[AGAAAATGGCGATTACCCCCGTCGATTCCCCCTCCCCTCCATCTCCGATCAGCAGAGCCAACCTGCACTTCTCCCGCCTCCTCGCGCTCCCGGCCGGTGACGGCGAGCTGGCTCTCGGTGTTAACACGGCGACCCTCATCCTATCATCCTCCTGTGTGTGCGGCCTCCTTGCGAGCAGGTCTGGAGCGGCGGCGCGCGCGGCCGGCCCCCCATCTCGGTCCTCGAATCGAATCGGAGATAGTACTTCAGTTTGGAAAAATGTCAGGAGATTAAAATTGGTGGAAGCCACTTGGCGCAAGAATAAGTAAAAGATTTGGGCATCATTGCATCAAGCCGAACAAAAAGGTCTATAAAACATCAAACACATTCTGTGTGTTGAGCACAATGGTCAAACGACTGGAACAAAGGAAAAAAAAACCGACAATTCGACCTAAGCTACTGACAGAAACTAAGGAATCACACTACTAAATGAGGT]
[+] EMBL CF303365 [AGAAAATGGCGATTACCCCCGTCGATTCCCCCTCCCCTCCATCTCCGATCAGCAGAGCCAACCTGCACTTCTCCCGCCTCCTCGCGCTCCCGGCCGGTGACGGCGAGCTGGCTCTCGGTGTTAACACGGCGACCCTCATCCTATCATCCTCCTGTGTGTGCGGCCTCCTTGCGAGCAGGTCTGGAGCGGCGGCGCGCGCGGCCGGCCCCCCATCTCGGTCCTCGAATCGAATCGGAGATAGTACTTCAGTTTGGAAAAATGTCAGGAGATTAAAATTGGTGGAAGCCACTTGGCGCAAGAATAAGTAAAAGATTTGGGCATCATTGCATCAAGCCGAACAAAAAGGTCTATAAAACATCAAACACATTCTGTGTGTTGAGCACAATGGTCAAACGACTGGAACAAAGGAAAAAAAAACCGACAATTCGACCTAAGCTACTGACAGAAACTAAGGAATCACACTACTAAATGAGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3760#0 AAGAAGAAGAAGAAGAGAGAAAATGGCGATTACCCCCGTCGATTCCCCCTCCCCTCCATC 60
consensus_3760#1 -----------------AGAAAATGGCGATTACCCCCGTCGATTCCCCCTCCCCTCCATC 43
*******************************************
consensus_3760#0 TCCGATCAGCAGAGCCAACCTGCACTTCTCCCGCCTCCTCGCGCTCCCGGCCGGTGACGG 120
consensus_3760#1 TCCGATCAGCAGAGCCAACCTGCACTTCTCCCGCCTCCTCGCGCTCCCGGCCGGTGACGG 103
************************************************************
consensus_3760#0 CGAGCTGGCTCTCGGTGTTAACACGGCGACCCCCCACCCTAGCATCCTCCTGTGTGTGCG 180
consensus_3760#1 CGAGCTGGCTCTCGGTGTTAACACGGCGACCCTC-ATCCTATCATCCTCCTGTGTGTGCG 162
******************************** * * **** ******************
consensus_3760#0 GCCTCCTTGCGAGCAGGTCTGGAGCGGCGGCGCGCGCGGCCGGCCCCCCATCTCGGTCCT 240
consensus_3760#1 GCCTCCTTGCGAGCAGGTCTGGAGCGGCGGCGCGCGCGGCCGGCCCCCCATCTCGGTCCT 222
************************************************************
consensus_3760#0 CGAATCGAATCGGAGATAGTACTTCAGTTTGGAAAAATGTCAGGAGATTAAAATTGGTGG 300
consensus_3760#1 CGAATCGAATCGGAGATAGTACTTCAGTTTGGAAAAATGTCAGGAGATTAAAATTGGTGG 282
************************************************************
consensus_3760#0 AAGCCACTTGGCGCAAGTGCTACTCTTCACTCTTCAGTCACTGAATAATGAAGTATCCCT 360
consensus_3760#1 AAGCCACTTGGCGCAAG------------------------------------------- 299
*****************
consensus_3760#0 GTACAATGAAAAGGTATTTCTGGCATTTTATGATGAGAGGATAATCACCTTTTTTCAGGA 420
consensus_3760#1 -----------------------------------------------------------A 300
*
consensus_3760#0 ATAAGTAAAAGATTTGGGCATCATTGCATCAAGCCGAACAAAAAGGTTTATAAAACATCA 480
consensus_3760#1 ATAAGTAAAAGATTTGGGCATCATTGCATCAAGCCGAACAAAAAGGTCTATAAAACATCA 360
*********************************************** ************
consensus_3760#0 AACACATCCTGTGTGTTGAGCACAATGGTCAAACGACTGGAACAAAGGAAAAAAAAACCG 540
consensus_3760#1 AACACATTCTGTGTGTTGAGCACAATGGTCAAACGACTGGAACAAAGGAAAAAAAAACCG 420
******* ****************************************************
consensus_3760#0 ACAATTCGACCTAAGCTACTGACAGAAACTAAGGAATCAGACTACTAAATGAGGCAAGCT 600
consensus_3760#1 ACAATTCGACCTAAGCTACTGACAGAAACTAAGGAATCACACTACTAAATGAGGT----- 475
*************************************** **************
consensus_3760#0 CTTACTGTGCGACCCACTAATTCGCTTCTTCTGCAATTGACGCAATGATCCAAGAACAAG 660
consensus_3760#1 ------------------------------------------------------------
consensus_3760#0 CACTTTTGCAGAAGTGGAGGTGAGACATCTTTGCAGGGGTTGGCCTGTTGACAGGAAGCC 720
consensus_3760#1 ------------------------------------------------------------
consensus_3760#0 TATTGAGTTTACAAAATGGTGGCATGGTGTAATGTTGTAATATTTTGCTACTCACTTCAG 780
consensus_3760#1 ------------------------------------------------------------
consensus_3760#0 TTTGCAGTTAATGAGTTTTGGAGTAATCATAGCATTAGCCAAATGTTTTCTGACATAGCA 840
consensus_3760#1 ------------------------------------------------------------
consensus_3760#0 AAGGTCTCCAAGGTCTCAGGCTCTCAGCTTACCATGGCAGACCTGGTCTTACTGATTGTG 900
consensus_3760#1 ------------------------------------------------------------
consensus_3760#0 CACTATTTCCTCATAGATATTCCCCTTCTAGCAGTAATAGCATAATTCCCTTCTTTCTGT 960
consensus_3760#1 ------------------------------------------------------------
consensus_3760#0 GGAATTTCGTATGTTCAAATTATTTCAATATTGCCTCAGTTTTATACTTTGCTGGTGTTA 1020
consensus_3760#1 ------------------------------------------------------------
consensus_3760#0 ATTGCTACTGAACTACTGATAATATTGGAAAACCTGGCCTTATATGGAATTACTGAAGTA 1080
consensus_3760#1 ------------------------------------------------------------
consensus_3760#0 CCTTCCCTTCGATCTCAGTTTACCATGGGAGACCTGGCCTTACTAGATTGTGTACTAGTT 1140
consensus_3760#1 ------------------------------------------------------------
consensus_3760#0 TCTGGTCATAGATGTTCCCCTTTTATGGGCAGTACCTTACTAATAATCCCTTTTCTTTCC 1200
consensus_3760#1 ------------------------------------------------------------
consensus_3760#0 TTTTGACACTGACAGTCTTTAAATTACTTCAATACTAACGAATTTGCTAGTGCTAATTGG 1260
consensus_3760#1 ------------------------------------------------------------
consensus_3760#0 TACTGACAATGTTGGAAAACCGCAGCAGTAATTGGTGTGGCATGTTCTGCCTGAGATGTT 1320
consensus_3760#1 ------------------------------------------------------------
consensus_3760#0 CAGTTAATAACGTTGTTCCAGTCTACTTTGTTACACTCAGATTGCCTTTTTGTTTGTTTT 1380
consensus_3760#1 ------------------------------------------------------------
consensus_3760#0 ACTTTAGGTAGTACTTCAGTTTGCAAAAGACGATGATATTGGATTTGGTGGAAGTCACTC 1440
consensus_3760#1 ------------------------------------------------------------
consensus_3760#0 GGCACAAGTGCTGCTGTCAAGAGACAGGAAGCTGACCCCTGTACAATGTAAAGTCATTGC 1500
consensus_3760#1 ------------------------------------------------------------
consensus_3760#0 TGCCATGCACAGGAATCCTGTGCATATATGATCCAAGATGCAACACTTTCGCACAAGCGG 1560
consensus_3760#1 ------------------------------------------------------------
consensus_3760#0 AGATCAGGATTCAGGAGATAAGTTCAGCTTACTGAAGACCTGCTGAGTTCAGCTTGAAGT 1620
consensus_3760#1 ------------------------------------------------------------
consensus_3760#0 TGACAAGTTTTGCAGAAATAGCTGACTCTTTTTTCACATTGGAGCCTGTGAAACTGTTGT 1680
consensus_3760#1 ------------------------------------------------------------
consensus_3760#0 AAATTCTTGATGACGCTAGATCTTTTTGTTTTGTATATTCTTCAGTAAATGTAAATATAA 1740
consensus_3760#1 ------------------------------------------------------------
consensus_3760#0 TGTAAGATGCACTTTTAAGTACGAATCCTGATATAAGGGGCACAGCAGCTCTGTTTTGCA 1800
consensus_3760#1 ------------------------------------------------------------
consensus_3760#0 GCTGCTAGTATGGTGGTCATGTAAATCGATGCAAGAAAAGCACCAGGGTGTCAGTGGCAC 1860
consensus_3760#1 ------------------------------------------------------------
consensus_3760#0 TCGTGCTATAGTTGACATTTGCAGTTTAATAAAAAGATGAAA 1902
consensus_3760#1 ------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||