These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3772#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1290 fasta sequence [TACAAGGAAGGAGTAGATAGCTAGGAATTAATTAATTAAGCTAAGGATGATGAAGAGGTTCTACTCGTCGATCGGGCAGGGGGTGGAGGCGCTGCACCGGAGTCTGGCGGTCGGCGAAGTGGGGTTCATGTCGGCGGCGTTCGTGCAGCAGGCTGCGGCGCTGGTGCGGTCGGTGCACGCGCAGCTGCTGGAGGTGGTGGGGAGGCTGCACCTGCCGGCGGGGGAGAGGTGGCTGGACGAGTACATGGACGAGACCTCCCGCCTGTGGGACGCCTGCCTCCTCGTCCGCGCCGGCGCCTCCGCCCTCCACGCCTACTCCGCCGCCGCCGCCCACGCCATCCACCACCTCTACGACCATGACGACGACTACATCCACGCCGCCCGCGCCATCAACGCCCCTCGCCGCCACGCCGCCGGCCTCCTCCAGGACAACCGCGCCCTCCTCCACGACAACATCCTCGACCCGGCCTCCCTCCTCCTCCTCGACCACCGCTCCCCGAGGGACCTCAACCTCAACGCCTTCAACGGCTTCCGCGCCCTCCTCTACGCCCTCCGCAACGCCACCTCCTTCCTCCTCGCCATCCTCCTCTCTGCCACCGTCTCCTCCTGCCTCCCCGACCACCTCATCTCCACCTGCACTCCCCTTCCCCTGCCCACCGCACCCGGCTACGCCTCCTCCATGGCTCGCCTCCGCCACCGCGTCGCCCAGGAGATGCGCGCCCTCGCCGCCCCCGCCGCCGACGGCATCCTGATGTACGAGTTCCGCCAGGCCAGGGCCGCCATCGACAGCCTCAAGGCCGACCTCGACAGGGTCGTCGCCACCGGCACCGGCTACGCCCACCGGGAGGACATGGCCGAGAGGGCCCACCTCGTCAAAGGCTGCCTCGCCATGCTCAGCTCCGGCGCCGAGGCCGTCATCGCCGAGCTCGACGACTTGTTCGATGACATTGTCGAGGGCAGGAAGATGCTCTCCGACCTCTGCAGCCATCGCTGATCCAAAGTCTAATCCAGACATCCACTGTATGATTATTAATTATTGCCACAAACAGATTATTAACATCATGCATGCATATTACTAATATAATTAATGCATGGTAGATAGTCGCATTAGCACAAGATGCATGGATGAGTTTGCTACTAGTAATTAACAAATGAGAATTACTTAATGTAGTACTCCAGCTAGGAAGGTCGTAGGTGTTTTTGTTTTCTTGTAATTCAGGCACTTCTCTAGCTTAGCTATATCACTCATCTAGTCACTGTATCTAGCTATAGATCGATCAATATATATGC] [+] EMBL AK101404 [TACAAGGAAGGAGTAGATAGCTAGGAATTAATTAATTAAGCTAAGGATGATGAAGAGGTTCTACTCGTCGATCGGGCAGGGGGTGGAGGCGCTGCACCGGAGTCTGGCGGTCGGCGAAGTGGGGTTCATGTCGGCGGCGTTCGTGCAGCAGGCTGCGGCGCTGGTGCGGTCGGTGCACGCGCAGCTGCTGGAGGTGGTGGGGAGGCTGCACCTGCCGGCGGGGGAGAGGTGGCTGGACGAGTACATGGACGAGACCTCCCGCCTGTGGGACGCCTGCCTCCTCGTCCGCGCCGGCGCCTCCGCCCTCCACGCCTACTCCGCCGCCGCCGCCCACGCCATCCACCACCTCTACGACCATGACGACGACTACATCCACGCCGCCCGCGCCATCAACGCCCCTCGCCGCCACGCCGCCGGCCTCCTCCAGGACAACCGCGCCCTCCTCCACGACAACATCCTCGACCCGGCCTCCCTCCTCCTCCTCGACCACCGCTCCCCGAGGGACCTCAACCTCAACGCCTTCAACGGCTTCCGCGCCCTCCTCTACGCCCTCCGCAACGCCACCTCCTTCCTCCTCGCCATCCTCCTCTCTGCCACCGTCTCCTCCTGCCTCCCCGACCACCTCATCTCCACCTGCACTCCCCTTCCCCTGCCCACCGCACCCGGCTACGCCTCCTCCATGGCTCGCCTCCGCCACCGCGTCGCCCAGGAGATGCGCGCCCTCGCCGCCCCCGCCGCCGACGGCATCCTGATGTACGAGTTCCGCCAGGCCAGGGCCGCCATCGACAGCCTCAAGGCCGACCTCGACAGGGTCGTCGCCACCGGCACCGGCTACGCCCACCGGGAGGACATGGCCGAGAGGGCCCACCTCGTCAAAGGCTGCCTCGCCATGCTCAGCTCCGGCGCCGAGGCCGTCATCGCCGAGCTCGACGACTTGTTCGATGACATTGTCGAGGGCAGGAAGATGCTCTCCGACCTCTGCAGCCATCGCTGATCCAAAGTCTAATCCAGACATCCACTGTATGATTATTAATTATTGCCACAAACAGATTATTAACATCATGCATGCATATTACTAATATAATTAATGCATGGTAGATAGTCGCATTAGCACAAGATGCATGGATGAGTTTGCTACTAGTAATTAACAAATGAGAATTACTTAATGTAGTACTCCAGCTAGGAAGGTCGTAGGTGTTTTTGTTTTCTTGTAATTCAGGCACTTCTCTAGCTTAGCTATATCACTCATCTAGTCACTGTATCTAGCTATAGATCGATCAATATATATGC] consensusID : consensus_3772#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 331 fasta sequence [AGCTAGGAATTAATTAATTAAGCTAAGGATGATGAAGAGGTTCTACTCGTCGATCGGGCAGGGGGTGGAGGCGCTGCACCGGAGTCTGGCGGTCGGCGAAGTGGGGTTCATGTCGGCGGCGTTCGTGCAGCAGGCTGCGGCGCTGGTGCGGTCGGTGCACGCGCANTGCTTGGAGGTGGGTGNGGAGGCTGCACCTGNCGTCGTGGGAGAGGTGGCTGGACGAGTACATGGACGAGACCTCCCGNCTNTGGGACGCCTGCCTTCCTCGTCCGNGCCGGNGGCTNCGCCTTCCACGGCTACTCCGCCGNCGCCGGCCAACGNCAATNCAACA] [+] EMBL OSC207520 [AGCTAGGAATTAATTAATTAAGCTAAGGATGATGAAGAGGTTCTACTCGTCGATCGGGCAGGGGGTGGAGGCGCTGCACCGGAGTCTGGCGGTCGGCGAAGTGGGGTTCATGTCGGCGGCGTTCGTGCAGCAGGCTGCGGCGCTGGTGCGGTCGGTGCACGCGCANTGCTTGGAGGTGGGTGNGGAGGCTGCACCTGNCGTCGTGGGAGAGGTGGCTGGACGAGTACATGGACGAGACCTCCCGNCTNTGGGACGCCTGCCTTCCTCGTCCGNGCCGGNGGCTNCGCCTTCCACGGCTACTCCGCCGNCGCCGGCCAACGNCAATNCAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3772#0 TACAAGGAAGGAGTAGATAGCTAGGAATTAATTAATTAAGCTAAGGATGATGAAGAGGTT 60 consensus_3772#1 ------------------AGCTAGGAATTAATTAATTAAGCTAAGGATGATGAAGAGGTT 42 ****************************************** consensus_3772#0 CTACTCGTCGATCGGGCAGGGGGTGGAGGCGCTGCACCGGAGTCTGGCGGTCGGCGAAGT 120 consensus_3772#1 CTACTCGTCGATCGGGCAGGGGGTGGAGGCGCTGCACCGGAGTCTGGCGGTCGGCGAAGT 102 ************************************************************ consensus_3772#0 GGGGTTCATGTCGGCGGCGTTCGTGCAGCAGGCTGCGGCGCTGGTGCGGTCGGTGCACGC 180 consensus_3772#1 GGGGTTCATGTCGGCGGCGTTCGTGCAGCAGGCTGCGGCGCTGGTGCGGTCGGTGCACGC 162 ************************************************************ consensus_3772#0 GCAGCTGCTGGAGGTGG-TGGGGAGGCTGCACCTGCCGGCGGGGGAGAGGTGGCTGGACG 239 consensus_3772#1 GCANTGCTTGGAGGTGGGTGNGGAGGCTGCACCTGNCGTCGTGGGAGAGGTGGCTGGACG 222 *** ********* ** ************** ** ** ****************** consensus_3772#0 AGTACATGGACGAGACCTCCCGCCTGTGGGACGCCTGCCT-CCTCGTCCGCGCCGGCGCC 298 consensus_3772#1 AGTACATGGACGAGACCTCCCGNCTNTGGGACGCCTGCCTTCCTCGTCCGNGCCGGNGGC 282 ********************** ** ************** ********* ***** * * consensus_3772#0 TCCGCCCTCCACGCCTACTCCGCCGCCGCCGCCCA-CGCCA-TCCACCACCTCTACGACC 356 consensus_3772#1 TNCGCCTTCCACGGCTACTCCGCCGNCGCCGGCCAACGNCAATNCAACA----------- 331 * **** ****** *********** ***** *** ** ** * ** ** consensus_3772#0 ATGACGACGACTACATCCACGCCGCCCGCGCCATCAACGCCCCTCGCCGCCACGCCGCCG 416 consensus_3772#1 ------------------------------------------------------------ consensus_3772#0 GCCTCCTCCAGGACAACCGCGCCCTCCTCCACGACAACATCCTCGACCCGGCCTCCCTCC 476 consensus_3772#1 ------------------------------------------------------------ consensus_3772#0 TCCTCCTCGACCACCGCTCCCCGAGGGACCTCAACCTCAACGCCTTCAACGGCTTCCGCG 536 consensus_3772#1 ------------------------------------------------------------ consensus_3772#0 CCCTCCTCTACGCCCTCCGCAACGCCACCTCCTTCCTCCTCGCCATCCTCCTCTCTGCCA 596 consensus_3772#1 ------------------------------------------------------------ consensus_3772#0 CCGTCTCCTCCTGCCTCCCCGACCACCTCATCTCCACCTGCACTCCCCTTCCCCTGCCCA 656 consensus_3772#1 ------------------------------------------------------------ consensus_3772#0 CCGCACCCGGCTACGCCTCCTCCATGGCTCGCCTCCGCCACCGCGTCGCCCAGGAGATGC 716 consensus_3772#1 ------------------------------------------------------------ consensus_3772#0 GCGCCCTCGCCGCCCCCGCCGCCGACGGCATCCTGATGTACGAGTTCCGCCAGGCCAGGG 776 consensus_3772#1 ------------------------------------------------------------ consensus_3772#0 CCGCCATCGACAGCCTCAAGGCCGACCTCGACAGGGTCGTCGCCACCGGCACCGGCTACG 836 consensus_3772#1 ------------------------------------------------------------ consensus_3772#0 CCCACCGGGAGGACATGGCCGAGAGGGCCCACCTCGTCAAAGGCTGCCTCGCCATGCTCA 896 consensus_3772#1 ------------------------------------------------------------ consensus_3772#0 GCTCCGGCGCCGAGGCCGTCATCGCCGAGCTCGACGACTTGTTCGATGACATTGTCGAGG 956 consensus_3772#1 ------------------------------------------------------------ consensus_3772#0 GCAGGAAGATGCTCTCCGACCTCTGCAGCCATCGCTGATCCAAAGTCTAATCCAGACATC 1016 consensus_3772#1 ------------------------------------------------------------ consensus_3772#0 CACTGTATGATTATTAATTATTGCCACAAACAGATTATTAACATCATGCATGCATATTAC 1076 consensus_3772#1 ------------------------------------------------------------ consensus_3772#0 TAATATAATTAATGCATGGTAGATAGTCGCATTAGCACAAGATGCATGGATGAGTTTGCT 1136 consensus_3772#1 ------------------------------------------------------------ consensus_3772#0 ACTAGTAATTAACAAATGAGAATTACTTAATGTAGTACTCCAGCTAGGAAGGTCGTAGGT 1196 consensus_3772#1 ------------------------------------------------------------ consensus_3772#0 GTTTTTGTTTTCTTGTAATTCAGGCACTTCTCTAGCTTAGCTATATCACTCATCTAGTCA 1256 consensus_3772#1 ------------------------------------------------------------ consensus_3772#0 CTGTATCTAGCTATAGATCGATCAATATATATGC 1290 consensus_3772#1 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||