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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3772#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1290 fasta sequence
[TACAAGGAAGGAGTAGATAGCTAGGAATTAATTAATTAAGCTAAGGATGATGAAGAGGTTCTACTCGTCGATCGGGCAGGGGGTGGAGGCGCTGCACCGGAGTCTGGCGGTCGGCGAAGTGGGGTTCATGTCGGCGGCGTTCGTGCAGCAGGCTGCGGCGCTGGTGCGGTCGGTGCACGCGCAGCTGCTGGAGGTGGTGGGGAGGCTGCACCTGCCGGCGGGGGAGAGGTGGCTGGACGAGTACATGGACGAGACCTCCCGCCTGTGGGACGCCTGCCTCCTCGTCCGCGCCGGCGCCTCCGCCCTCCACGCCTACTCCGCCGCCGCCGCCCACGCCATCCACCACCTCTACGACCATGACGACGACTACATCCACGCCGCCCGCGCCATCAACGCCCCTCGCCGCCACGCCGCCGGCCTCCTCCAGGACAACCGCGCCCTCCTCCACGACAACATCCTCGACCCGGCCTCCCTCCTCCTCCTCGACCACCGCTCCCCGAGGGACCTCAACCTCAACGCCTTCAACGGCTTCCGCGCCCTCCTCTACGCCCTCCGCAACGCCACCTCCTTCCTCCTCGCCATCCTCCTCTCTGCCACCGTCTCCTCCTGCCTCCCCGACCACCTCATCTCCACCTGCACTCCCCTTCCCCTGCCCACCGCACCCGGCTACGCCTCCTCCATGGCTCGCCTCCGCCACCGCGTCGCCCAGGAGATGCGCGCCCTCGCCGCCCCCGCCGCCGACGGCATCCTGATGTACGAGTTCCGCCAGGCCAGGGCCGCCATCGACAGCCTCAAGGCCGACCTCGACAGGGTCGTCGCCACCGGCACCGGCTACGCCCACCGGGAGGACATGGCCGAGAGGGCCCACCTCGTCAAAGGCTGCCTCGCCATGCTCAGCTCCGGCGCCGAGGCCGTCATCGCCGAGCTCGACGACTTGTTCGATGACATTGTCGAGGGCAGGAAGATGCTCTCCGACCTCTGCAGCCATCGCTGATCCAAAGTCTAATCCAGACATCCACTGTATGATTATTAATTATTGCCACAAACAGATTATTAACATCATGCATGCATATTACTAATATAATTAATGCATGGTAGATAGTCGCATTAGCACAAGATGCATGGATGAGTTTGCTACTAGTAATTAACAAATGAGAATTACTTAATGTAGTACTCCAGCTAGGAAGGTCGTAGGTGTTTTTGTTTTCTTGTAATTCAGGCACTTCTCTAGCTTAGCTATATCACTCATCTAGTCACTGTATCTAGCTATAGATCGATCAATATATATGC]
[+] EMBL AK101404 [TACAAGGAAGGAGTAGATAGCTAGGAATTAATTAATTAAGCTAAGGATGATGAAGAGGTTCTACTCGTCGATCGGGCAGGGGGTGGAGGCGCTGCACCGGAGTCTGGCGGTCGGCGAAGTGGGGTTCATGTCGGCGGCGTTCGTGCAGCAGGCTGCGGCGCTGGTGCGGTCGGTGCACGCGCAGCTGCTGGAGGTGGTGGGGAGGCTGCACCTGCCGGCGGGGGAGAGGTGGCTGGACGAGTACATGGACGAGACCTCCCGCCTGTGGGACGCCTGCCTCCTCGTCCGCGCCGGCGCCTCCGCCCTCCACGCCTACTCCGCCGCCGCCGCCCACGCCATCCACCACCTCTACGACCATGACGACGACTACATCCACGCCGCCCGCGCCATCAACGCCCCTCGCCGCCACGCCGCCGGCCTCCTCCAGGACAACCGCGCCCTCCTCCACGACAACATCCTCGACCCGGCCTCCCTCCTCCTCCTCGACCACCGCTCCCCGAGGGACCTCAACCTCAACGCCTTCAACGGCTTCCGCGCCCTCCTCTACGCCCTCCGCAACGCCACCTCCTTCCTCCTCGCCATCCTCCTCTCTGCCACCGTCTCCTCCTGCCTCCCCGACCACCTCATCTCCACCTGCACTCCCCTTCCCCTGCCCACCGCACCCGGCTACGCCTCCTCCATGGCTCGCCTCCGCCACCGCGTCGCCCAGGAGATGCGCGCCCTCGCCGCCCCCGCCGCCGACGGCATCCTGATGTACGAGTTCCGCCAGGCCAGGGCCGCCATCGACAGCCTCAAGGCCGACCTCGACAGGGTCGTCGCCACCGGCACCGGCTACGCCCACCGGGAGGACATGGCCGAGAGGGCCCACCTCGTCAAAGGCTGCCTCGCCATGCTCAGCTCCGGCGCCGAGGCCGTCATCGCCGAGCTCGACGACTTGTTCGATGACATTGTCGAGGGCAGGAAGATGCTCTCCGACCTCTGCAGCCATCGCTGATCCAAAGTCTAATCCAGACATCCACTGTATGATTATTAATTATTGCCACAAACAGATTATTAACATCATGCATGCATATTACTAATATAATTAATGCATGGTAGATAGTCGCATTAGCACAAGATGCATGGATGAGTTTGCTACTAGTAATTAACAAATGAGAATTACTTAATGTAGTACTCCAGCTAGGAAGGTCGTAGGTGTTTTTGTTTTCTTGTAATTCAGGCACTTCTCTAGCTTAGCTATATCACTCATCTAGTCACTGTATCTAGCTATAGATCGATCAATATATATGC]
consensusID : consensus_3772#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 331 fasta sequence
[AGCTAGGAATTAATTAATTAAGCTAAGGATGATGAAGAGGTTCTACTCGTCGATCGGGCAGGGGGTGGAGGCGCTGCACCGGAGTCTGGCGGTCGGCGAAGTGGGGTTCATGTCGGCGGCGTTCGTGCAGCAGGCTGCGGCGCTGGTGCGGTCGGTGCACGCGCANTGCTTGGAGGTGGGTGNGGAGGCTGCACCTGNCGTCGTGGGAGAGGTGGCTGGACGAGTACATGGACGAGACCTCCCGNCTNTGGGACGCCTGCCTTCCTCGTCCGNGCCGGNGGCTNCGCCTTCCACGGCTACTCCGCCGNCGCCGGCCAACGNCAATNCAACA]
[+] EMBL OSC207520 [AGCTAGGAATTAATTAATTAAGCTAAGGATGATGAAGAGGTTCTACTCGTCGATCGGGCAGGGGGTGGAGGCGCTGCACCGGAGTCTGGCGGTCGGCGAAGTGGGGTTCATGTCGGCGGCGTTCGTGCAGCAGGCTGCGGCGCTGGTGCGGTCGGTGCACGCGCANTGCTTGGAGGTGGGTGNGGAGGCTGCACCTGNCGTCGTGGGAGAGGTGGCTGGACGAGTACATGGACGAGACCTCCCGNCTNTGGGACGCCTGCCTTCCTCGTCCGNGCCGGNGGCTNCGCCTTCCACGGCTACTCCGCCGNCGCCGGCCAACGNCAATNCAACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3772#0 TACAAGGAAGGAGTAGATAGCTAGGAATTAATTAATTAAGCTAAGGATGATGAAGAGGTT 60
consensus_3772#1 ------------------AGCTAGGAATTAATTAATTAAGCTAAGGATGATGAAGAGGTT 42
******************************************
consensus_3772#0 CTACTCGTCGATCGGGCAGGGGGTGGAGGCGCTGCACCGGAGTCTGGCGGTCGGCGAAGT 120
consensus_3772#1 CTACTCGTCGATCGGGCAGGGGGTGGAGGCGCTGCACCGGAGTCTGGCGGTCGGCGAAGT 102
************************************************************
consensus_3772#0 GGGGTTCATGTCGGCGGCGTTCGTGCAGCAGGCTGCGGCGCTGGTGCGGTCGGTGCACGC 180
consensus_3772#1 GGGGTTCATGTCGGCGGCGTTCGTGCAGCAGGCTGCGGCGCTGGTGCGGTCGGTGCACGC 162
************************************************************
consensus_3772#0 GCAGCTGCTGGAGGTGG-TGGGGAGGCTGCACCTGCCGGCGGGGGAGAGGTGGCTGGACG 239
consensus_3772#1 GCANTGCTTGGAGGTGGGTGNGGAGGCTGCACCTGNCGTCGTGGGAGAGGTGGCTGGACG 222
*** ********* ** ************** ** ** ******************
consensus_3772#0 AGTACATGGACGAGACCTCCCGCCTGTGGGACGCCTGCCT-CCTCGTCCGCGCCGGCGCC 298
consensus_3772#1 AGTACATGGACGAGACCTCCCGNCTNTGGGACGCCTGCCTTCCTCGTCCGNGCCGGNGGC 282
********************** ** ************** ********* ***** * *
consensus_3772#0 TCCGCCCTCCACGCCTACTCCGCCGCCGCCGCCCA-CGCCA-TCCACCACCTCTACGACC 356
consensus_3772#1 TNCGCCTTCCACGGCTACTCCGCCGNCGCCGGCCAACGNCAATNCAACA----------- 331
* **** ****** *********** ***** *** ** ** * ** **
consensus_3772#0 ATGACGACGACTACATCCACGCCGCCCGCGCCATCAACGCCCCTCGCCGCCACGCCGCCG 416
consensus_3772#1 ------------------------------------------------------------
consensus_3772#0 GCCTCCTCCAGGACAACCGCGCCCTCCTCCACGACAACATCCTCGACCCGGCCTCCCTCC 476
consensus_3772#1 ------------------------------------------------------------
consensus_3772#0 TCCTCCTCGACCACCGCTCCCCGAGGGACCTCAACCTCAACGCCTTCAACGGCTTCCGCG 536
consensus_3772#1 ------------------------------------------------------------
consensus_3772#0 CCCTCCTCTACGCCCTCCGCAACGCCACCTCCTTCCTCCTCGCCATCCTCCTCTCTGCCA 596
consensus_3772#1 ------------------------------------------------------------
consensus_3772#0 CCGTCTCCTCCTGCCTCCCCGACCACCTCATCTCCACCTGCACTCCCCTTCCCCTGCCCA 656
consensus_3772#1 ------------------------------------------------------------
consensus_3772#0 CCGCACCCGGCTACGCCTCCTCCATGGCTCGCCTCCGCCACCGCGTCGCCCAGGAGATGC 716
consensus_3772#1 ------------------------------------------------------------
consensus_3772#0 GCGCCCTCGCCGCCCCCGCCGCCGACGGCATCCTGATGTACGAGTTCCGCCAGGCCAGGG 776
consensus_3772#1 ------------------------------------------------------------
consensus_3772#0 CCGCCATCGACAGCCTCAAGGCCGACCTCGACAGGGTCGTCGCCACCGGCACCGGCTACG 836
consensus_3772#1 ------------------------------------------------------------
consensus_3772#0 CCCACCGGGAGGACATGGCCGAGAGGGCCCACCTCGTCAAAGGCTGCCTCGCCATGCTCA 896
consensus_3772#1 ------------------------------------------------------------
consensus_3772#0 GCTCCGGCGCCGAGGCCGTCATCGCCGAGCTCGACGACTTGTTCGATGACATTGTCGAGG 956
consensus_3772#1 ------------------------------------------------------------
consensus_3772#0 GCAGGAAGATGCTCTCCGACCTCTGCAGCCATCGCTGATCCAAAGTCTAATCCAGACATC 1016
consensus_3772#1 ------------------------------------------------------------
consensus_3772#0 CACTGTATGATTATTAATTATTGCCACAAACAGATTATTAACATCATGCATGCATATTAC 1076
consensus_3772#1 ------------------------------------------------------------
consensus_3772#0 TAATATAATTAATGCATGGTAGATAGTCGCATTAGCACAAGATGCATGGATGAGTTTGCT 1136
consensus_3772#1 ------------------------------------------------------------
consensus_3772#0 ACTAGTAATTAACAAATGAGAATTACTTAATGTAGTACTCCAGCTAGGAAGGTCGTAGGT 1196
consensus_3772#1 ------------------------------------------------------------
consensus_3772#0 GTTTTTGTTTTCTTGTAATTCAGGCACTTCTCTAGCTTAGCTATATCACTCATCTAGTCA 1256
consensus_3772#1 ------------------------------------------------------------
consensus_3772#0 CTGTATCTAGCTATAGATCGATCAATATATATGC 1290
consensus_3772#1 ----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||