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Oryza sativa
cluster # 3773 cluster # 3773       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3773#0 length = 1559 sequences # 1  
consensus_3773#1 length = 206 sequences # 1  

consensusID : consensus_3773#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1559
fasta sequence
                              [GAATATTGGCAGATTCATGATGAGATCGATGGGTGATGGAAGAGAAGGGAAGGCATTATTGAGTGCAGCGTTGATGAACCTGCCGGCCGGCTAAATTAATTAGCAAGAAAGTCTGAAACTGGCTCAAAGGTTCACCAGCACTGCACCCAATCACGCCTTTGCTCTCTCTGAGGGGAAATTAATTAGTTTGTGCTAGTTCATCAGATGCACACACAATCCATATCCATATCCATAAATCTTATAGTACTATTAGTTTTCAATTCTCATTGTAGATTCGACAAAGTTCATATGAGAACCAGGGGATGGATGCAGGGATGCATTTGGTAAGTTAGCTCTCTTCACTCTCACAAGATGCGTTCTTGTCCCAGGTTTGTAGCTTTATCACATCCCTTCTTGTCTTCAAATACTGTCATCTCGATTTGGTAATTAGACATGACAAAACTGAAATTAAGGCGCTCTTGACTTGATTAGTACTCCTTTCACCTCAAAACATAAACATAAGACGTAACTATTTTTTCAGATGTCTTATAATACAAGCATGTATATATCCATGCAATTAACTAACATATTCTCTTTCTCTTTAATTTGGTTTTTTAAGTCCAGTCTCAAGATCTCAAGATGGTACTGATTTTTTTTTCCAAAATTAGTAAATGAGAAAATGGAGGGCTACAAGGACTCCAGTCTACTCTCGTACGAAGTTGATTTTATTTTCGGAACAGAGGGAATAGGAGGCTAGCTAGATCTCCATGCATAAGGATGAAGATACATGTAAGCGGCAGAACATTTTCACAAACGGGTCGAATCTGCACGAAACTGAACATGCAGATCACAGAGACGGAGGATGGAGCAATCAAGCAAGCGATCGATCGAGATGCAACACAGCTAAAAGAGAAGAGAAGAGCACTACACTGCACAGAGATCAGAGGAAGACGACGAGACGAGTGGCATATGTTCTTCAGGAAGATGTGAGATGAGTATATATAATATAAATCAGTTGGGGCCCCAGCAGACGAGGTGGTGGACCTTGCGCAGCCTCACGTCGGCGGCCTCCTCCGCCGGCGGCCGCGCGGCGGCGGCGGCGGTGTTGGAGAGGGGGGAACGCAGCCTGGGCGAGGAGGCGGCGGCGCGGAGGTAGAGGGAGCGGAGGGCGTAGTCCCAGCGGCAGAGGCCCGCCTGGTCCTTGAGCGCCTCGACGGCGCCCATGCTCGCCGCCACCACCAGCGACGGCGCCGCCGCCTTCGCCCCGCAGATCGCCATCCCGAGTTCCCGACCCGGCTACTCCGCCTCCGCCTCCGCTCGGTCACAGTGCGCGGCGCTTGCGCTTGCTAGTGATGCGGAGGTGGTGGAGGCGTGGTGGTCAGGGGAGACGCCATGTTTTTATACGCGAGATGAGCGGAAAGCGGCGAAACGGGGAGCGCGTCGCCGCCGGTTTTGGACGCTCACTCTGTTTCCAAGGATGCTGGGCGGTGCGAGCCTCACTGCGAGGACACGGGGATTATTGTTTGTTTTCGTCTGTCCAGAAATATAAACAATTTTTAAATAATTGAAATATATTTTAA]

[+] EMBL AK109752             [GAATATTGGCAGATTCATGATGAGATCGATGGGTGATGGAAGAGAAGGGAAGGCATTATTGAGTGCAGCGTTGATGAACCTGCCGGCCGGCTAAATTAATTAGCAAGAAAGTCTGAAACTGGCTCAAAGGTTCACCAGCACTGCACCCAATCACGCCTTTGCTCTCTCTGAGGGGAAATTAATTAGTTTGTGCTAGTTCATCAGATGCACACACAATCCATATCCATATCCATAAATCTTATAGTACTATTAGTTTTCAATTCTCATTGTAGATTCGACAAAGTTCATATGAGAACCAGGGGATGGATGCAGGGATGCATTTGGTAAGTTAGCTCTCTTCACTCTCACAAGATGCGTTCTTGTCCCAGGTTTGTAGCTTTATCACATCCCTTCTTGTCTTCAAATACTGTCATCTCGATTTGGTAATTAGACATGACAAAACTGAAATTAAGGCGCTCTTGACTTGATTAGTACTCCTTTCACCTCAAAACATAAACATAAGACGTAACTATTTTTTCAGATGTCTTATAATACAAGCATGTATATATCCATGCAATTAACTAACATATTCTCTTTCTCTTTAATTTGGTTTTTTAAGTCCAGTCTCAAGATCTCAAGATGGTACTGATTTTTTTTTCCAAAATTAGTAAATGAGAAAATGGAGGGCTACAAGGACTCCAGTCTACTCTCGTACGAAGTTGATTTTATTTTCGGAACAGAGGGAATAGGAGGCTAGCTAGATCTCCATGCATAAGGATGAAGATACATGTAAGCGGCAGAACATTTTCACAAACGGGTCGAATCTGCACGAAACTGAACATGCAGATCACAGAGACGGAGGATGGAGCAATCAAGCAAGCGATCGATCGAGATGCAACACAGCTAAAAGAGAAGAGAAGAGCACTACACTGCACAGAGATCAGAGGAAGACGACGAGACGAGTGGCATATGTTCTTCAGGAAGATGTGAGATGAGTATATATAATATAAATCAGTTGGGGCCCCAGCAGACGAGGTGGTGGACCTTGCGCAGCCTCACGTCGGCGGCCTCCTCCGCCGGCGGCCGCGCGGCGGCGGCGGCGGTGTTGGAGAGGGGGGAACGCAGCCTGGGCGAGGAGGCGGCGGCGCGGAGGTAGAGGGAGCGGAGGGCGTAGTCCCAGCGGCAGAGGCCCGCCTGGTCCTTGAGCGCCTCGACGGCGCCCATGCTCGCCGCCACCACCAGCGACGGCGCCGCCGCCTTCGCCCCGCAGATCGCCATCCCGAGTTCCCGACCCGGCTACTCCGCCTCCGCCTCCGCTCGGTCACAGTGCGCGGCGCTTGCGCTTGCTAGTGATGCGGAGGTGGTGGAGGCGTGGTGGTCAGGGGAGACGCCATGTTTTTATACGCGAGATGAGCGGAAAGCGGCGAAACGGGGAGCGCGTCGCCGCCGGTTTTGGACGCTCACTCTGTTTCCAAGGATGCTGGGCGGTGCGAGCCTCACTGCGAGGACACGGGGATTATTGTTTGTTTTCGTCTGTCCAGAAATATAAACAATTTTTAAATAATTGAAATATATTTTAA]


>consensus_3773#0 GAATATTGGCAGATTCATGATGAGATCGATGGGTGATGGAAGAGAAGGGAAGGCATTATT GAGTGCAGCGTTGATGAACCTGCCGGCCGGCTAAATTAATTAGCAAGAAAGTCTGAAACT GGCTCAAAGGTTCACCAGCACTGCACCCAATCACGCCTTTGCTCTCTCTGAGGGGAAATT AATTAGTTTGTGCTAGTTCATCAGATGCACACACAATCCATATCCATATCCATAAATCTT ATAGTACTATTAGTTTTCAATTCTCATTGTAGATTCGACAAAGTTCATATGAGAACCAGG GGATGGATGCAGGGATGCATTTGGTAAGTTAGCTCTCTTCACTCTCACAAGATGCGTTCT TGTCCCAGGTTTGTAGCTTTATCACATCCCTTCTTGTCTTCAAATACTGTCATCTCGATT TGGTAATTAGACATGACAAAACTGAAATTAAGGCGCTCTTGACTTGATTAGTACTCCTTT CACCTCAAAACATAAACATAAGACGTAACTATTTTTTCAGATGTCTTATAATACAAGCAT GTATATATCCATGCAATTAACTAACATATTCTCTTTCTCTTTAATTTGGTTTTTTAAGTC CAGTCTCAAGATCTCAAGATGGTACTGATTTTTTTTTCCAAAATTAGTAAATGAGAAAAT GGAGGGCTACAAGGACTCCAGTCTACTCTCGTACGAAGTTGATTTTATTTTCGGAACAGA GGGAATAGGAGGCTAGCTAGATCTCCATGCATAAGGATGAAGATACATGTAAGCGGCAGA ACATTTTCACAAACGGGTCGAATCTGCACGAAACTGAACATGCAGATCACAGAGACGGAG GATGGAGCAATCAAGCAAGCGATCGATCGAGATGCAACACAGCTAAAAGAGAAGAGAAGA GCACTACACTGCACAGAGATCAGAGGAAGACGACGAGACGAGTGGCATATGTTCTTCAGG AAGATGTGAGATGAGTATATATAATATAAATCAGTTGGGGCCCCAGCAGACGAGGTGGTG GACCTTGCGCAGCCTCACGTCGGCGGCCTCCTCCGCCGGCGGCCGCGCGGCGGCGGCGGC GGTGTTGGAGAGGGGGGAACGCAGCCTGGGCGAGGAGGCGGCGGCGCGGAGGTAGAGGGA GCGGAGGGCGTAGTCCCAGCGGCAGAGGCCCGCCTGGTCCTTGAGCGCCTCGACGGCGCC CATGCTCGCCGCCACCACCAGCGACGGCGCCGCCGCCTTCGCCCCGCAGATCGCCATCCC GAGTTCCCGACCCGGCTACTCCGCCTCCGCCTCCGCTCGGTCACAGTGCGCGGCGCTTGC GCTTGCTAGTGATGCGGAGGTGGTGGAGGCGTGGTGGTCAGGGGAGACGCCATGTTTTTA TACGCGAGATGAGCGGAAAGCGGCGAAACGGGGAGCGCGTCGCCGCCGGTTTTGGACGCT CACTCTGTTTCCAAGGATGCTGGGCGGTGCGAGCCTCACTGCGAGGACACGGGGATTATT GTTTGTTTTCGTCTGTCCAGAAATATAAACAATTTTTAAATAATTGAAATATATTTTAA



consensusID : consensus_3773#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 206
fasta sequence
                              [GCGGAGNTAGANGGANCGNAGGTCGTAGTCCCANGCGTNANAGGCCCGNCTGGTCCCTTGCACNCTCNACGGCGCNCATGCTCGNCGNCACCANANATGGACGGCGCCGCCGCCTTCGCCCCGCAGANCGCCATCCCGAGTTCNCGACCCGNCTACTNCGCCNGCGCCTNCGCTCGGTCACAGTGCGCTGCCNTTGCGNTTGCTAG]

[-] EMBL OSC20851             [GCGGAGNTAGANGGANCGNAGGTCGTAGTCCCANGCGTNANAGGCCCGNCTGGTCCCTTGCACNCTCNACGGCGCNCATGCTCGNCGNCACCANANATGGACGGCGCCGCCGCCTTCGCCCCGCAGANCGCCATCCCGAGTTCNCGACCCGNCTACTNCGCCNGCGCCTNCGCTCGGTCACAGTGCGCTGCCNTTGCGNTTGCTAG]


>consensus_3773#1 GCGGAGNTAGANGGANCGNAGGTCGTAGTCCCANGCGTNANAGGCCCGNCTGGTCCCTTG CACNCTCNACGGCGCNCATGCTCGNCGNCACCANANATGGACGGCGCCGCCGCCTTCGCC CCGCAGANCGCCATCCCGAGTTCNCGACCCGNCTACTNCGCCNGCGCCTNCGCTCGGTCA CAGTGCGCTGCCNTTGCGNTTGCTAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3773#0      GAATATTGGCAGATTCATGATGAGATCGATGGGTGATGGAAGAGAAGGGAAGGCATTATT 60
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      GAGTGCAGCGTTGATGAACCTGCCGGCCGGCTAAATTAATTAGCAAGAAAGTCTGAAACT 120
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      GGCTCAAAGGTTCACCAGCACTGCACCCAATCACGCCTTTGCTCTCTCTGAGGGGAAATT 180
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      AATTAGTTTGTGCTAGTTCATCAGATGCACACACAATCCATATCCATATCCATAAATCTT 240
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      ATAGTACTATTAGTTTTCAATTCTCATTGTAGATTCGACAAAGTTCATATGAGAACCAGG 300
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      GGATGGATGCAGGGATGCATTTGGTAAGTTAGCTCTCTTCACTCTCACAAGATGCGTTCT 360
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      TGTCCCAGGTTTGTAGCTTTATCACATCCCTTCTTGTCTTCAAATACTGTCATCTCGATT 420
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      TGGTAATTAGACATGACAAAACTGAAATTAAGGCGCTCTTGACTTGATTAGTACTCCTTT 480
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      CACCTCAAAACATAAACATAAGACGTAACTATTTTTTCAGATGTCTTATAATACAAGCAT 540
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      GTATATATCCATGCAATTAACTAACATATTCTCTTTCTCTTTAATTTGGTTTTTTAAGTC 600
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      CAGTCTCAAGATCTCAAGATGGTACTGATTTTTTTTTCCAAAATTAGTAAATGAGAAAAT 660
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      GGAGGGCTACAAGGACTCCAGTCTACTCTCGTACGAAGTTGATTTTATTTTCGGAACAGA 720
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      GGGAATAGGAGGCTAGCTAGATCTCCATGCATAAGGATGAAGATACATGTAAGCGGCAGA 780
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      ACATTTTCACAAACGGGTCGAATCTGCACGAAACTGAACATGCAGATCACAGAGACGGAG 840
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      GATGGAGCAATCAAGCAAGCGATCGATCGAGATGCAACACAGCTAAAAGAGAAGAGAAGA 900
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      GCACTACACTGCACAGAGATCAGAGGAAGACGACGAGACGAGTGGCATATGTTCTTCAGG 960
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      AAGATGTGAGATGAGTATATATAATATAAATCAGTTGGGGCCCCAGCAGACGAGGTGGTG 1020
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      GACCTTGCGCAGCCTCACGTCGGCGGCCTCCTCCGCCGGCGGCCGCGCGGCGGCGGCGGC 1080
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      GGTGTTGGAGAGGGGGGAACGCAGCCTGGGCGAGGAGGCGGCGGCGCGGAGGTAGAGGGA 1140
consensus_3773#1      ---------------------------------------------GCGGAGNTAGANGGA 15
                                                                   ****** **** ***

consensus_3773#0      GCGGAGGGCGTAGTCCCAG-CGGCAGAGGCCCGCCTGGTCCTTGAGCGCCTCGACGGCGC 1199
consensus_3773#1      NCGNAGGTCGTAGTCCCANGCGTNANAGGCCCGNCTGGTCCCTTGCACNCTCNACGGCGC 75
                       ** *** **********  **  * ******* ******* *      *** *******

consensus_3773#0      CCATGCTCGCCGCCACCACCAGCG-ACGGCGCCGCCGCCTTCGCCCCGCAGATCGCCATC 1258
consensus_3773#1      NCATGCTCGNCGNCACCANANATGGACGGCGCCGCCGCCTTCGCCCCGCAGANCGCCATC 135
                       ******** ** *****     * *************************** *******

consensus_3773#0      CCGAGTTCCCGACCCGGCTACTCCGCCTCCGCCTCCGCTCGGTCACAGTGCGCGGCGCTT 1318
consensus_3773#1      CCGAGTTCNCGACCCGNCTACTNCGCCNGCGCCTNCGCTCGGTCACAGTGCGCTGCCNTT 195
                      ******** ******* ***** ****  ***** ****************** **  **

consensus_3773#0      GCGCTTGCTAGTGATGCGGAGGTGGTGGAGGCGTGGTGGTCAGGGGAGACGCCATGTTTT 1378
consensus_3773#1      GCGNTTGCTAG------------------------------------------------- 206
                      *** *******                                                 

consensus_3773#0      TATACGCGAGATGAGCGGAAAGCGGCGAAACGGGGAGCGCGTCGCCGCCGGTTTTGGACG 1438
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      CTCACTCTGTTTCCAAGGATGCTGGGCGGTGCGAGCCTCACTGCGAGGACACGGGGATTA 1498
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      TTGTTTGTTTTCGTCTGTCCAGAAATATAAACAATTTTTAAATAATTGAAATATATTTTA 1558
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      A 1559
consensus_3773#1      -
                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)