These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3786#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence [CAGAAACCTTCCAGACCGGAGTGGAGCCTCTCTGTCCCGTGGCGGCCATGTCAGCCGGAAGCGAAAGAGCCCACGCCGCCTTCGCGAGCCCCTCGCCGGTGTCGGGGGCCTTCTTCTCCGCCTCCGGCTCAATCCTCTCCGGCTCAATCCTCTCCGGCTCAATCCTCTCCTCCTCCTCCGCCGCTGTCACCACCACCACCAGCGCGGGTAGGACCCCGTCCTCCTCCTCCGGAGCGCCCACGAAAAAGAAGAAGAAGCCGCCGTTCCGCCCCGTCGCCGACGACACCAAGCCCGTCCTCCGCGACCCGATATCTCGGTCGGACCCGGTGGAGACCGAGCAGGCCGTGCTGCGGCTGCCGCCATTCCCCTAGGGTACAGGTCCGCACGCCGCTGACCGACGATGTTACTACCAGGGTTCAAGAATCAGGTATCGACATGATGATTAGCTCCTACATTTTTCTTCTGCGCAAGCCTGCCCATTGTCACTCCTATAATTTGCTCAGACTGTGGTATGTGTAGTGTACTACAGTACACTTGGCTACTCTGCTAAACCCTGTAGACGAAAAATCACTCTCTTAAATATTCATTGCCTCAT] [+] EMBL AK108255 [CAGAAACCTTCCAGACCGGAGTGGAGCCTCTCTGTCCCGTGGCGGCCATGTCAGCCGGAAGCGAAAGAGCCCACGCCGCCTTCGCGAGCCCCTCGCCGGTGTCGGGGGCCTTCTTCTCCGCCTCCGGCTCAATCCTCTCCGGCTCAATCCTCTCCGGCTCAATCCTCTCCTCCTCCTCCGCCGCTGTCACCACCACCACCAGCGCGGGTAGGACCCCGTCCTCCTCCTCCGGAGCGCCCACGAAAAAGAAGAAGAAGCCGCCGTTCCGCCCCGTCGCCGACGACACCAAGCCCGTCCTCCGCGACCCGATATCTCGGTCGGACCCGGTGGAGACCGAGCAGGCCGTGCTGCGGCTGCCGCCATTCCCCTAGGGTACAGGTCCGCACGCCGCTGACCGACGATGTTACTACCAGGGTTCAAGAATCAGGTATCGACATGATGATTAGCTCCTACATTTTTCTTCTGCGCAAGCCTGCCCATTGTCACTCCTATAATTTGCTCAGACTGTGGTATGTGTAGTGTACTACAGTACACTTGGCTACTCTGCTAAACCCTGTAGACGAAAAATCACTCTCTTAAATATTCATTGCCTCAT] consensusID : consensus_3786#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 229 fasta sequence [GAGCCTCTCTGTCCCGTGGCGGCCATGTCAGCCGGAAGCGAAAGAGCCCACGCCGCCTTCGCGAGCCCNTCGCCGGTGTCGGGGGCCTTCTTCTCCGNCTCCGGCTCAATCCTCTCCGGCTCAATCCTCTCCGGCTCAATCCTCTNCTCCTACTGCGACGCTGTCAACATCANCANCAGTGAGGGTAGGANCCNGTCCTTNNTTNTTCTGAGCGTCAGGAAAAAAGAAG] [+] EMBL OSC28781 [GAGCCTCTCTGTCCCGTGGCGGCCATGTCAGCCGGAAGCGAAAGAGCCCACGCCGCCTTCGCGAGCCCNTCGCCGGTGTCGGGGGCCTTCTTCTCCGNCTCCGGCTCAATCCTCTCCGGCTCAATCCTCTCCGGCTCAATCCTCTNCTCCTACTGCGACGCTGTCAACATCANCANCAGTGAGGGTAGGANCCNGTCCTTNNTTNTTCTGAGCGTCAGGAAAAAAGAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3786#0 CAGAAACCTTCCAGACCGGAGTGGAGCCTCTCTGTCCCGTGGCGGCCATGTCAGCCGGAA 60 consensus_3786#1 -----------------------GAGCCTCTCTGTCCCGTGGCGGCCATGTCAGCCGGAA 37 ************************************* consensus_3786#0 GCGAAAGAGCCCACGCCGCCTTCGCGAGCCCCTCGCCGGTGTCGGGGGCCTTCTTCTCCG 120 consensus_3786#1 GCGAAAGAGCCCACGCCGCCTTCGCGAGCCCNTCGCCGGTGTCGGGGGCCTTCTTCTCCG 97 ******************************* **************************** consensus_3786#0 CCTCCGGCTCAATCCTCTCCGGCTCAATCCTCTCCGGCTCAATCCTCTCCTCCTCCTCCG 180 consensus_3786#1 NCTCCGGCTCAATCCTCTCCGGCTCAATCCTCTCCGGCTCAATCCTCTNCTCCTACTGCG 157 *********************************************** ***** ** ** consensus_3786#0 CCGCTGTCACCACCACCACCAGCGCGGGTAGGACCCCGTCCT-CCTCCTCCGGAGCGCCC 239 consensus_3786#1 ACGCTGTCAACATCANCANCAGTGAGGGTAGGANCCNGTCCTTNNTTNTTCTGAGCGTCA 217 ******** ** ** ** *** * ******** ** ***** * * * ***** * consensus_3786#0 ACGAAAAAGAAGAAGAAGCCGCCGTTCCGCCCCGTCGCCGACGACACCAAGCCCGTCCTC 299 consensus_3786#1 GGAAAAAAGAAG------------------------------------------------ 229 ********* consensus_3786#0 CGCGACCCGATATCTCGGTCGGACCCGGTGGAGACCGAGCAGGCCGTGCTGCGGCTGCCG 359 consensus_3786#1 ------------------------------------------------------------ consensus_3786#0 CCATTCCCCTAGGGTACAGGTCCGCACGCCGCTGACCGACGATGTTACTACCAGGGTTCA 419 consensus_3786#1 ------------------------------------------------------------ consensus_3786#0 AGAATCAGGTATCGACATGATGATTAGCTCCTACATTTTTCTTCTGCGCAAGCCTGCCCA 479 consensus_3786#1 ------------------------------------------------------------ consensus_3786#0 TTGTCACTCCTATAATTTGCTCAGACTGTGGTATGTGTAGTGTACTACAGTACACTTGGC 539 consensus_3786#1 ------------------------------------------------------------ consensus_3786#0 TACTCTGCTAAACCCTGTAGACGAAAAATCACTCTCTTAAATATTCATTGCCTCAT 595 consensus_3786#1 -------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||