|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_380#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1435 fasta sequence
[GCTTCTCCACTAGGGTTTCTCGCCGCCGCCGCCGCCGCTCGCCGTCGCCGTCGCCGCCGGATCAGAGATGAGCGCATCCAGGCCGGATCACCGGCGGCACCACCCGCCGTTTCTCCGGGACCTCTCGTCGCCGATCTCCTCGGCCGTGCGGCTGCCCCCGGCCTCCCTCCGCCGCGAGACGCAAGGTTCCACCACCCCGCCGCCGCCGCCGCCGCCGCTGCTGTTCCTCGACGACCTCTCCCACCACTCCCCCTCGCCGAGGCCCGCCACCCCACCTCAGGCGGCGGCCATGAGCCCCTCGCCTCCCCCTCCCCACCGCGGCGGCCTCTTCTCCTCCACCCCGCTGCGCTCCAATGGGTCCCCCTCCCCGGCCGCGTGGTGGTCCTCCTCGAGGGAGGAGATGGCCAGGGAGGGCTCGCCGGTCGATGGTGTCGTGCAGCCGCAGCAGCAGCCGTCTCCGACGACGGCGTCTGGGCAGCAGTCGCAGCAGCAGAAGGTGACGCTCATCACGCTGCCGCCACCCAGGGAAGTTGCGCGGCCGGAGATGCCGAAGGATTCGACACCTTCCGCTGGCCGTGTCGACGAGGAGGAGTGGGTCACCGTTTTTGGTTTTTTACCTGGCGATACCAACTTGGTACTGAGAGAATTTGAGAAGTGTGGTATAGTCTTGAGACATGTCCCTGGTCCAAGGGATGCGAACTGGATGCATATCCTGTATCAGAGCCGGCATGATGCACAAAAAGCTCTCACCAAGCACGGTCAACAGTTAAACAGTGTTCTTATCATCGGTGTGAAGCAAGTGGACCCATGGCAGCGGCAGTACCTGAATGAGAAGACAAATGAGAACTTTCAAGTTGGTGCAACAGATCCATTTCCATCACAGCATGTAGCACCAAGTTCATTTACAACTAGAAATGCACTAGCACCTTTGCCTAGCAATTCTATGCCAAATGGAATCGGCAACGGGAGTGGCCGTGGTGCTTCGGGGGCCATTGCTTCACCCACAAAATCAGTATTGTCCAAAGTTATGGACCTGATGTTCGGCCTCTAAATCCTGTTACCAAGTACTGGCTGTTATTCTTTTGGCTGTTCCAAGGCAAATCGAGGATTACTGATCATAACATTTCTTATTGTTGGGTTTTTCGCACCGAAGTGACATTATTGGTCCACAGAATCTGTATTGTACCGAGCCTAAGATCATCAGGGTGTCATACTGGTATATCACCCGGTCGGTCTGGAGCTAGTGTTGATGGTGTTTCGCTCGTAAGCATTCAGTGGATCATCCAATACCAAACCATATGGAAATTATGTCCATGGAAATATCATCAAGTATCATCCTGGTTTTATACATATTGAAATGATTCTGACCTGTATGTGAATGCATCTTAGTAAATTGTTTTCGAATGATTTGACATGAGAGCCTATATATATGTTG]
[+] EMBL AK068290 [GCTTCTCCACTAGGGTTTCTCGCCGCCGCCGCCGCCGCTCGCCGTCGCCGTCGCCGCCGGATCAGAGATGAGCGCATCCAGGCCGGATCACCGGCGGCACCACCCGCCGTTTCTCCGGGACCTCTCGTCGCCGATCTCCTCGGCCGTGCGGCTGCCCCCGGCCTCCCTCCGCCGCGAGACGCAAGGTTCCACCACCCCGCCGCCGCCGCCGCCGCCGCTGCTGTTCCTCGACGACCTCTCCCACCACTCCCCCTCGCCGAGGCCCGCCACCCCACCTCAGGCGGCGGCCATGAGCCCCTCGCCTCCCCCTCCCCACCGCGGCGGCCTCTTCTCCTCCACCCCGCTGCGCTCCAATGGGTCCCCCTCCCCGGCCGCGTGGTGGTCCTCCTCGAGGGAGGAGATGGCCAGGGAGGGCTCGCCGGTCGATGGTGTCGTGCAGCCGCAGCAGCAGCCGTCTCCGACGACGGCGTCTGGGCAGCAGTCGCAGCAGCAGAAGGTGACGCTCATCACGCTGCCGCCACCCAGGGAAGTTGCGCGGCCGGAGATGCCGAAGGATTCGACACCTTCCGCTGGCCGTGTCGACGAGGAGGAGTGGGTCACCGTTTTTGGTTTTTTACCTGGCGATACCAACTTGGTACTGAGAGAATTTGAGAAGTGTGGTATAGTCTTGAGACATGTCCCTGGTCCAAGGGATGCGAACTGGATGCATATCCTGTATCAGAGCCGGCATGATGCACAAAAAGCTCTCACCAAGCACGGTCAACAGTTAAACAGTGTTCTTATCATCGGTGTGAAGCAAGTGGACCCATGGCAGCGGCAGTACCTGAATGAGAAGACAAATGAGAACTTTCAAGTTGGTGCAACAGATCCATTTCCATCACAGCATGTAGCACCAAGTTCATTTACAACTAGAAATGCACTAGCACCTTTGCCTAGCAATTCTATGCCAAATGGAATCGGCAACGGGAGTGGCCGTGGTGCTTCGGGGGCCATTGCTTCACCCACAAAATCAGTATTGTCCAAAGTTATGGACCTGATGTTCGGCCTCTAAATCCTGTTACCAAGTACTGGCTGTTATTCTTTTGGCTGTTCCAAGGCAAATCGAGGATTACTGATCATAACATTTCTTATTGTTGGGTTTTTCGCACCGAAGTGACATTATTGGTCCACAGAATCTGTATTGTACCGAGCCTAAGATCATCAGGGTGTCATACTGGTATATCACCCGGTCGGTCTGGAGCTAGTGTTGATGGTGTTTCGCTCGTAAGCATTCAGTGGATCATCCAATACCAAACCATATGGAAATTATGTCCATGGAAATATCATCAAGTATCATCCTGGTTTTATACATATTGAAATGATTCTGACCTGTATGTGAATGCATCTTAGTAAATTGTTTTCGAATGATTTGACATGAGAGCCTATATATATGTTG]
consensusID : consensus_380#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence
[CCTACCCANNCNNNNNTACCCCCNCCACANNAACAACCNNCNCCGNNNCNCANNCNANNGCANCNNCNNNAANCGANNNNNNNNNNNNNNNNNNNNNNANNNNATAATATATTTTTCTCCCCCACCCGGGGGGGGGGGCCCCCTGGGGTTTTTTTCAGGGGGCCCTTGCTTTCACCCCCCAAAAATCCGGTTTTGGTCCAAAATTTAAGGCCCTAAATTGTCCGCCCTTCTAAATCCTGTTACAAAGTACTGGCTGTATTCTTTGGCTTGTTCCAAGGCCAAATTCCGAGGAATTCCTGGATCATAACCTTTCCTTATTGTTGGGTTTTTCGCCCCGAAGTGACATTATTGGTCCACAGAATCTGTATTGTACCGAGCCTAAGATCATCAGGGTGTCATACTGGTATATCACCCGGTCGGTCTGGAAGCTAAGTGTTGNNNATGNNGTGTTTCGCTCGTAAGCATTCAGTGGGTCATCCAATACCAAACCATATGGAAATTATGTCCATGGAAATATCATCAAGTATCATCCTGGTTTTATACATATTGAAATGATTCTGACCTGTATGTGAATGCATCTTAGTAAATTGTTTTCGAATGATTTGACATGAGAGCCAAAAAAAAAAAAA]
[-] EMBL CA760246 [CCTACCCANNCNNNNNTACCCCCNCCACANNAACAACCNNCNCCGNNNCNCANNCNANNGCANCNNCNNNAANCGANNNNNNNNNNNNNNNNNNNNNNANNNNATAATATATTTTTCTCCCCCACCCGGGGGGGGGGGCCCCCTGGGGTTTTTTTCAGGGGGCCCTTGCTTTCACCCCCCAAAAATCCGGTTTTGGTCCAAAATTTAAGGCCCTAAATTGTCCGCCCTTCTAAATCCTGTTACAAAGTACTGGCTGTATTCTTTGGCTTGTTCCAAGGCCAAATTCCGAGGAATTCCTGGATCATAACCTTTCCTTATTGTTGGGTTTTTCGCCCCGAAGTGACATTATTGGTCCACAGAATCTGTATTGTACCGAGCCTAAGATCATCAGGGTGTCATACTGGTATATCACCCGGTCGGTCTGGAAGCTAAGTGTTGNNNATGNNGTGTTTCGCTCGTAAGCATTCAGTGGGTCATCCAATACCAAACCATATGGAAATTATGTCCATGGAAATATCATCAAGTATCATCCTGGTTTTATACATATTGAAATGATTCTGACCTGTATGTGAATGCATCTTAGTAAATTGTTTTCGAATGATTTGACATGAGAGCCAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_380#0 GCTTCTCCACTAGGGTTTCTCGCCGCCGCCGCCGCCGCTCGCCGTCGCCGTCGCCGCCGG 60
consensus_380#1 ------------------------------------------------------------
consensus_380#0 ATCAGAGATGAGCGCATCCAGGCCGGATCACCGGCGGCACCACCCGCCGTTTCTCCGGGA 120
consensus_380#1 ------------------------------------------------------------
consensus_380#0 CCTCTCGTCGCCGATCTCCTCGGCCGTGCGGCTGCCCCCGGCCTCCCTCCGCCGCGAGAC 180
consensus_380#1 ------------------------------------------------------------
consensus_380#0 GCAAGGTTCCACCACCCCGCCGCCGCCGCCGCCGCCGCTGCTGTTCCTCGACGACCTCTC 240
consensus_380#1 ------------------------------------------------------------
consensus_380#0 CCACCACTCCCCCTCGCCGAGGCCCGCCACCCCACCTCAGGCGGCGGCCATGAGCCCCTC 300
consensus_380#1 ------------------------------------------------------------
consensus_380#0 GCCTCCCCCTCCCCACCGCGGCGGCCTCTTCTCCTCCACCCCGCTGCGCTCCAATGGGTC 360
consensus_380#1 ------------------------------------------------------------
consensus_380#0 CCCCTCCCCGGCCGCGTGGTGGTCCTCCTCGAGGGAGGAGATGGCCAGGGAGGGCTCGCC 420
consensus_380#1 ------------------------------------------------------------
consensus_380#0 GGTCGATGGTGTCGTGCAGCCGCAGCAGCAGCCGTCTCCGACGACGGCGTCTGGGCAGCA 480
consensus_380#1 ------------------------------------------------------------
consensus_380#0 GTCGCAGCAGCAGAAGGTGACGCTCATCACGCTGCCGCCACCCAGGGAAGTTGCGCGGCC 540
consensus_380#1 ------------------------------------------------------------
consensus_380#0 GGAGATGCCGAAGGATTCGACACCTTCCGCTGGCCGTGTCGACGAGGAGGAGTGGGTCAC 600
consensus_380#1 ------------------------------------------------------------
consensus_380#0 CGTTTTTGGTTTTTTACCTGGCGATACCAACTTGGTACTGAGAGAATTTGAGAAGTGTGG 660
consensus_380#1 ------------------------------------------------------------
consensus_380#0 TATAGTCTTGAGACATGTCCCTGGTCCAAGGGATGCGAACTGGATGCATATCCTGTATCA 720
consensus_380#1 ------------------------------------------------------------
consensus_380#0 GAGCCGGCATGATGCACAAAAAGCTCTCACCAAGCACGGTCAACAGTTAAACAGTGTTCT 780
consensus_380#1 ------------------------------------------------------------
consensus_380#0 TATCATCGGTGTGAAGCAAGTGGACCCATGGCAGCGGCAGTACCTGAATGAGAAGACAAA 840
consensus_380#1 --------------------------------------------------CCTACCCANN 10
* **
consensus_380#0 TGAGAACTTTCAAGTTGGTGCAACAGATCCATTTCCATCACAGCATGTAGCACCAAGTTC 900
consensus_380#1 CNNNNNTACCCCCNCCACANNAACAACCNNCNCCGNNNCNCANNCNANNGCANCNNCNNN 70
* **** * ** *** *
consensus_380#0 ATTTACAACTAGAAATGCACTAGCACCTTTGCCTAGCAAT-TCTATGCCAAATGGAATCG 959
consensus_380#1 AA--NCGANNNNNNNNNNNNNNNNNNNNNNANNNNATAATATATTTTTCTCCCCCACCCG 128
* * * *** * * * * * **
consensus_380#0 GCAACGGGAGTGGCC-GTGGTGCTTC---GGGGGCCATTGCTT----CACCCACAAAATC 1011
consensus_380#1 GGGGGGGGGGCCCCCTGGGGTTTTTTTCAGGGGGCCCTTGCTTTCACCCCCCAAAAATCC 188
* *** * ** * *** ** ******* ****** * **** *** *
consensus_380#0 AGTATTG-TCCAAAGTT-ATGGACCTGA--TGTTCGGCCT-CTAAATCCTGTTACCAAGT 1066
consensus_380#1 GGTTTTGGTCCAAAATTTAAGGCCCTAAATTGTCCGCCCTTCTAAATCCTGTTACAAAGT 248
** *** ****** ** * ** *** * *** ** *** ************** ****
consensus_380#0 ACTGGCTGTTATTCTTTTGGCTGTTCCAAGGCAAA---TCGAGGATTACT--GATCATAA 1121
consensus_380#1 ACTGGCTGT-ATTCTTTGGCTTGTTCCAAGGCCAAATTCCGAGGAATTCCTGGATCATAA 307
********* ******* * *********** ** ****** * * ********
consensus_380#0 CATTTC-TTATTGTTGGGTTTTTCGCACCGAAGTGACATTATTGGTCCACAGAATCTGTA 1180
consensus_380#1 CCTTTCCTTATTGTTGGGTTTTTCGCCCCGAAGTGACATTATTGGTCCACAGAATCTGTA 367
* **** ******************* *********************************
consensus_380#0 TTGTACCGAGCCTAAGATCATCAGGGTGTCATACTGGTATATCACCCGGTCGGTCTGGA- 1239
consensus_380#1 TTGTACCGAGCCTAAGATCATCAGGGTGTCATACTGGTATATCACCCGGTCGGTCTGGAA 427
***********************************************************
consensus_380#0 GCTA-GTGTTGATG-----GTGTTTCGCTCGTAAGCATTCAGTGGATCATCCAATACCAA 1293
consensus_380#1 GCTAAGTGTTGNNNATGNNGTGTTTCGCTCGTAAGCATTCAGTGGGTCATCCAATACCAA 487
**** ****** ************************** **************
consensus_380#0 ACCATATGGAAATTATGTCCATGGAAATATCATCAAGTATCATCCTGGTTTTATACATAT 1353
consensus_380#1 ACCATATGGAAATTATGTCCATGGAAATATCATCAAGTATCATCCTGGTTTTATACATAT 547
************************************************************
consensus_380#0 TGAAATGATTCTGACCTGTATGTGAATGCATCTTAGTAAATTGTTTTCGAATGATTTGAC 1413
consensus_380#1 TGAAATGATTCTGACCTGTATGTGAATGCATCTTAGTAAATTGTTTTCGAATGATTTGAC 607
************************************************************
consensus_380#0 ATGAGAGCCTATATATATGTTG 1435
consensus_380#1 ATGAGAGCCAAAAAAAAAAAAA 629
********* * * * *
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||