These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3826#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2411 fasta sequence [GGCGTGAGTGGTGGTGCGCCTGTCCGCCCCGGGCAGTCGCCTCTCGCCGGCGGCGGGCTTGGACGGCCGGAGATAGGCCGCAAACTCGCGAAGGCGCCTCCGTCGCGGCGGCAGAAGCGGGTGGCGTCCTGTCGGTGGTCGGCGTCCGGGTGGGGGGTTGGGGGAACCCTCGCGGTCGCGGCGGCGGGGATGGTGAAGATAGTGACGTACAACGTGAACGGGCTGCGGCCGCGGGTGGCGCAGCATGGCTCGCTCCGCCGCCTCCTCGACGCCCTCGACGCCGACATCATCTGCTTCCAGGAGACAAAATTGTCGAGGCAGGACTTGTCGGGGGATGTCATCATGGCTGAGGGATACGAGGCTTTTATTTCATGCAATCGTTCATCGAAAGGGCGTGGAGCTTACTCTGGTGTTGCCACGTTTTGCCGGGTAACATCAGCCTTTTCCAGTCAAGAGGTTGCTTTACCAGTAGCAGCTGAGGAAGGCTTTACTGGATTGCAAGAGACTGCAAAGAACAGTGAAACTATTGGGGATTTTGTTCTTGTAACTCCTGTGGAAGAGGAAGGTCTTGGTGAAGTAACAAAAGAAGAGCTGCTCAAGGTGGACAATGAAGGACGTTGTGTAATTACAGATCATGGACATTTTGTTCTTTTTAATATATATGGCCCAGCTGTTGAAGAAGATGATATAGAACGAGTTCGCTTTAAGCTACTATTTTACAAGATACTACAGAGAAGATGGGAACATTTGTTGGCTCTTGGGAAAAGAGTTTTCGTTGTTGGTGATTTGAATATTGCACCTTCTTCAATAGATAGGTGTGATGCCCAACCTGGATTCGAGAAGCAAACGTTTCGGAAATGGTTGAGATCCATGCTGAGAGAACATGGAGGTCCATTTTTTGATGCTTTCCGATCAAAACACCCTGAAAGAGTGGGAGCTTATACCTGTTTTAATCAAAAAGTTGGAGCTGAAGTATACAATTATGGTTCTAGAATTGATCACATTCTCATTTCTGGTGCCTGCTTCCATCACTGCGGTTCTGTGGATGACCACAGCATCTTTCCCTGCCATGTGGAAGAATGTGAAATTATGGATCATTTCAGAAGAGGGAATAGCGAAAATATGTCAATGTGGAAAGGAGGGAGAAGTAGTAAGCTAGAAGGATCAGATCATATTCCAGTTTATATTGTGCTGAATGAGATACCTGAACTTCCAGTTCATAACACTCCTTCATCAGCTGCTAGATATCTTCCTGAAATCCGTGGACGGCAACAGAGCATAGTATCATTCCTAAGGAAAGGCATGATTTATGAACATAAAGATGCCATGTCCATGGATAGAGCAGATGAAAGCTGCTGTGGTGGTGGCTTGGAAAGGAAAGCTATATATAAGGAAGAACCACCAACTGATATAGCCAAATTTTCCAAAGGTAACGACCTTCATAGTGTCATCAAGCGGAAAATTCGTGATCAATTGTTAAATGAAGGTTCAAGTGGCAACTCCCATAATAGCACTGCAGCATTACTGGCAACACAAAGTAGAAAAGCTTCCTTTTCTTGCAGCAAGGCTGTGTCCAACAAGAAAAACAAACATAACTTGTCTTCCCAACCTACGATCAAGTCATTTTTTCAACAACCAAAGTCAAAGCCAGGAGATAGCAGTACCAATAGCATAGTTACTCCACCAGATACTTTGCATGGTATGGATGAATTACATGATCCAAAGAATGACTGTCTGCCAGAAAGCATCCAGTGTACAACTCCAGCAACCGAAGATCAGGGTAACTCAGATGTACCCTGCTCGCTTTCAACAGATAAATGCAATGAAGCAACACTGGAGTGGCAAAGAATACAGCAGAGAATGAAGATGACCCTACCACTTTGCAAAGGACACCATGAACCTTGCATTCCAAGGTCTGTGAAGAAAGGCTCTAATATTGGTCGCCTATTCTATGTCTGTGCCCGTGCTCAGGGACCTGCATCAAACCAAGAAGCAAATTGTGGTCACTTTCAGTGGGCCACTGTTAAGTCTAAAGAGAAACGCCGGTGACTAATTTCTCTTTTATCGCATAGGTGTAACACTCACTCCTGGACATGTGTGTGTCACTTGTTTCTATACACATGAAATGCTGATGTTCTTCTCGGGAGCAAGCTGGTATTTGAGTCAGCAACTCGGCATTAATCTCTAGTTATGCATTACGCAGGTACATAATTTAATTTTGTGTTTAATTTAGATGGCTACCATGGCCTCCTTTGTTGTTTACATATGTTATATTGTTTGGTCAAATGCCACCTTGTAGCTTTCTCGTAGTTTTGTTTTCTCGGGTTTGGCTAGCTTATGTTTGCAACTACCCTTGGATGTATTAATTGAAAAACTAGCTGAGAAGCATGAAAAGAAATCAAGTGAAGTAA] [+] EMBL AK103074 [GGCGTGAGTGGTGGTGCGCCTGTCCGCCCCGGGCAGTCGCCTCTCGCCGGCGGCGGGCTTGGACGGCCGGAGATAGGCCGCAAACTCGCGAAGGCGCCTCCGTCGCGGCGGCAGAAGCGGGTGGCGTCCTGTCGGTGGTCGGCGTCCGGGTGGGGGGTTGGGGGAACCCTCGCGGTCGCGGCGGCGGGGATGGTGAAGATAGTGACGTACAACGTGAACGGGCTGCGGCCGCGGGTGGCGCAGCATGGCTCGCTCCGCCGCCTCCTCGACGCCCTCGACGCCGACATCATCTGCTTCCAGGAGACAAAATTGTCGAGGCAGGACTTGTCGGGGGATGTCATCATGGCTGAGGGATACGAGGCTTTTATTTCATGCAATCGTTCATCGAAAGGGCGTGGAGCTTACTCTGGTGTTGCCACGTTTTGCCGGGTAACATCAGCCTTTTCCAGTCAAGAGGTTGCTTTACCAGTAGCAGCTGAGGAAGGCTTTACTGGATTGCAAGAGACTGCAAAGAACAGTGAAACTATTGGGGATTTTGTTCTTGTAACTCCTGTGGAAGAGGAAGGTCTTGGTGAAGTAACAAAAGAAGAGCTGCTCAAGGTGGACAATGAAGGACGTTGTGTAATTACAGATCATGGACATTTTGTTCTTTTTAATATATATGGCCCAGCTGTTGAAGAAGATGATATAGAACGAGTTCGCTTTAAGCTACTATTTTACAAGATACTACAGAGAAGATGGGAACATTTGTTGGCTCTTGGGAAAAGAGTTTTCGTTGTTGGTGATTTGAATATTGCACCTTCTTCAATAGATAGGTGTGATGCCCAACCTGGATTCGAGAAGCAAACGTTTCGGAAATGGTTGAGATCCATGCTGAGAGAACATGGAGGTCCATTTTTTGATGCTTTCCGATCAAAACACCCTGAAAGAGTGGGAGCTTATACCTGTTTTAATCAAAAAGTTGGAGCTGAAGTATACAATTATGGTTCTAGAATTGATCACATTCTCATTTCTGGTGCCTGCTTCCATCACTGCGGTTCTGTGGATGACCACAGCATCTTTCCCTGCCATGTGGAAGAATGTGAAATTATGGATCATTTCAGAAGAGGGAATAGCGAAAATATGTCAATGTGGAAAGGAGGGAGAAGTAGTAAGCTAGAAGGATCAGATCATATTCCAGTTTATATTGTGCTGAATGAGATACCTGAACTTCCAGTTCATAACACTCCTTCATCAGCTGCTAGATATCTTCCTGAAATCCGTGGACGGCAACAGAGCATAGTATCATTCCTAAGGAAAGGCATGATTTATGAACATAAAGATGCCATGTCCATGGATAGAGCAGATGAAAGCTGCTGTGGTGGTGGCTTGGAAAGGAAAGCTATATATAAGGAAGAACCACCAACTGATATAGCCAAATTTTCCAAAGGTAACGACCTTCATAGTGTCATCAAGCGGAAAATTCGTGATCAATTGTTAAATGAAGGTTCAAGTGGCAACTCCCATAATAGCACTGCAGCATTACTGGCAACACAAAGTAGAAAAGCTTCCTTTTCTTGCAGCAAGGCTGTGTCCAACAAGAAAAACAAACATAACTTGTCTTCCCAACCTACGATCAAGTCATTTTTTCAACAACCAAAGTCAAAGCCAGGAGATAGCAGTACCAATAGCATAGTTACTCCACCAGATACTTTGCATGGTATGGATGAATTACATGATCCAAAGAATGACTGTCTGCCAGAAAGCATCCAGTGTACAACTCCAGCAACCGAAGATCAGGGTAACTCAGATGTACCCTGCTCGCTTTCAACAGATAAATGCAATGAAGCAACACTGGAGTGGCAAAGAATACAGCAGAGAATGAAGATGACCCTACCACTTTGCAAAGGACACCATGAACCTTGCATTCCAAGGTCTGTGAAGAAAGGCTCTAATATTGGTCGCCTATTCTATGTCTGTGCCCGTGCTCAGGGACCTGCATCAAACCAAGAAGCAAATTGTGGTCACTTTCAGTGGGCCACTGTTAAGTCTAAAGAGAAACGCCGGTGACTAATTTCTCTTTTATCGCATAGGTGTAACACTCACTCCTGGACATGTGTGTGTCACTTGTTTCTATACACATGAAATGCTGATGTTCTTCTCGGGAGCAAGCTGGTATTTGAGTCAGCAACTCGGCATTAATCTCTAGTTATGCATTACGCAGGTACATAATTTAATTTTGTGTTTAATTTAGATGGCTACCATGGCCTCCTTTGTTGTTTACATATGTTATATTGTTTGGTCAAATGCCACCTTGTAGCTTTCTCGTAGTTTTGTTTTCTCGGGTTTGGCTAGCTTATGTTTGCAACTACCCTTGGATGTATTAATTGAAAAACTAGCTGAGAAGCATGAAAAGAAATCAAGTGAAGTAA] consensusID : consensus_3826#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence [AATGGTTGAGATCCATGCTGAGAGAACATGGAGGTCCATTTTTTGATGCTTTCCGATCAAAACACCCTGAAAGAGTGGGAGCTTATACCTGTTTTAATCAAAAAGTTGGAGCTGAAGTATACAATTATGGTTCTAGAATTGATCACATTCTCATTTCTGGTGCCTGCTTCCATCACTGCGGTTCTGTGGATGACCACAGCATCTTTCCCTGCCATGTGGAAGAATGTGAAATTATGGATCATTTCAGAAGAGGGAATAGCGAAAATATGTCAATGTATAGAATGGTCGAAAGTTTTCTTTGCAGGATTTGCAGTGACACATTAGAATTATTTACTATATTACATTGTCCACAGGTGGAAAGGAGGGAGAAGTAGTAAGCTAGAAGGATCAGATCATATTCCAGTTTATATTGTGCTGAATGAGATACCTGAACTTCCAGTTCATAACACTCCTTCATCAGCTGCTAGATATCTTCCTGAAATCCGTGGACGGCAACAGAGCATAGTATCATTCCTAAGGAAAGGCATGATTTATGAACATAAAGATGCCATGTCCATGGATAGAGCAGATGAAAGCTGCTGTGGTGGTGGCTT] [+] EMBL CF305085 [AATGGTTGAGATCCATGCTGAGAGAACATGGAGGTCCATTTTTTGATGCTTTCCGATCAAAACACCCTGAAAGAGTGGGAGCTTATACCTGTTTTAATCAAAAAGTTGGAGCTGAAGTATACAATTATGGTTCTAGAATTGATCACATTCTCATTTCTGGTGCCTGCTTCCATCACTGCGGTTCTGTGGATGACCACAGCATCTTTCCCTGCCATGTGGAAGAATGTGAAATTATGGATCATTTCAGAAGAGGGAATAGCGAAAATATGTCAATGTATAGAATGGTCGAAAGTTTTCTTTGCAGGATTTGCAGTGACACATTAGAATTATTTACTATATTACATTGTCCACAGGTGGAAAGGAGGGAGAAGTAGTAAGCTAGAAGGATCAGATCATATTCCAGTTTATATTGTGCTGAATGAGATACCTGAACTTCCAGTTCATAACACTCCTTCATCAGCTGCTAGATATCTTCCTGAAATCCGTGGACGGCAACAGAGCATAGTATCATTCCTAAGGAAAGGCATGATTTATGAACATAAAGATGCCATGTCCATGGATAGAGCAGATGAAAGCTGCTGTGGTGGTGGCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3826#0 GGCGTGAGTGGTGGTGCGCCTGTCCGCCCCGGGCAGTCGCCTCTCGCCGGCGGCGGGCTT 60 consensus_3826#1 ------------------------------------------------------------ consensus_3826#0 GGACGGCCGGAGATAGGCCGCAAACTCGCGAAGGCGCCTCCGTCGCGGCGGCAGAAGCGG 120 consensus_3826#1 ------------------------------------------------------------ consensus_3826#0 GTGGCGTCCTGTCGGTGGTCGGCGTCCGGGTGGGGGGTTGGGGGAACCCTCGCGGTCGCG 180 consensus_3826#1 ------------------------------------------------------------ consensus_3826#0 GCGGCGGGGATGGTGAAGATAGTGACGTACAACGTGAACGGGCTGCGGCCGCGGGTGGCG 240 consensus_3826#1 ------------------------------------------------------------ consensus_3826#0 CAGCATGGCTCGCTCCGCCGCCTCCTCGACGCCCTCGACGCCGACATCATCTGCTTCCAG 300 consensus_3826#1 ------------------------------------------------------------ consensus_3826#0 GAGACAAAATTGTCGAGGCAGGACTTGTCGGGGGATGTCATCATGGCTGAGGGATACGAG 360 consensus_3826#1 ------------------------------------------------------------ consensus_3826#0 GCTTTTATTTCATGCAATCGTTCATCGAAAGGGCGTGGAGCTTACTCTGGTGTTGCCACG 420 consensus_3826#1 ------------------------------------------------------------ consensus_3826#0 TTTTGCCGGGTAACATCAGCCTTTTCCAGTCAAGAGGTTGCTTTACCAGTAGCAGCTGAG 480 consensus_3826#1 ------------------------------------------------------------ consensus_3826#0 GAAGGCTTTACTGGATTGCAAGAGACTGCAAAGAACAGTGAAACTATTGGGGATTTTGTT 540 consensus_3826#1 ------------------------------------------------------------ consensus_3826#0 CTTGTAACTCCTGTGGAAGAGGAAGGTCTTGGTGAAGTAACAAAAGAAGAGCTGCTCAAG 600 consensus_3826#1 ------------------------------------------------------------ consensus_3826#0 GTGGACAATGAAGGACGTTGTGTAATTACAGATCATGGACATTTTGTTCTTTTTAATATA 660 consensus_3826#1 ------------------------------------------------------------ consensus_3826#0 TATGGCCCAGCTGTTGAAGAAGATGATATAGAACGAGTTCGCTTTAAGCTACTATTTTAC 720 consensus_3826#1 ------------------------------------------------------------ consensus_3826#0 AAGATACTACAGAGAAGATGGGAACATTTGTTGGCTCTTGGGAAAAGAGTTTTCGTTGTT 780 consensus_3826#1 ------------------------------------------------------------ consensus_3826#0 GGTGATTTGAATATTGCACCTTCTTCAATAGATAGGTGTGATGCCCAACCTGGATTCGAG 840 consensus_3826#1 ------------------------------------------------------------ consensus_3826#0 AAGCAAACGTTTCGGAAATGGTTGAGATCCATGCTGAGAGAACATGGAGGTCCATTTTTT 900 consensus_3826#1 ----------------AATGGTTGAGATCCATGCTGAGAGAACATGGAGGTCCATTTTTT 44 ******************************************** consensus_3826#0 GATGCTTTCCGATCAAAACACCCTGAAAGAGTGGGAGCTTATACCTGTTTTAATCAAAAA 960 consensus_3826#1 GATGCTTTCCGATCAAAACACCCTGAAAGAGTGGGAGCTTATACCTGTTTTAATCAAAAA 104 ************************************************************ consensus_3826#0 GTTGGAGCTGAAGTATACAATTATGGTTCTAGAATTGATCACATTCTCATTTCTGGTGCC 1020 consensus_3826#1 GTTGGAGCTGAAGTATACAATTATGGTTCTAGAATTGATCACATTCTCATTTCTGGTGCC 164 ************************************************************ consensus_3826#0 TGCTTCCATCACTGCGGTTCTGTGGATGACCACAGCATCTTTCCCTGCCATGTGGAAGAA 1080 consensus_3826#1 TGCTTCCATCACTGCGGTTCTGTGGATGACCACAGCATCTTTCCCTGCCATGTGGAAGAA 224 ************************************************************ consensus_3826#0 TGTGAAATTATGGATCATTTCAGAAGAGGGAATAGCGAAAATATGTCAATGT-------- 1132 consensus_3826#1 TGTGAAATTATGGATCATTTCAGAAGAGGGAATAGCGAAAATATGTCAATGTATAGAATG 284 **************************************************** consensus_3826#0 ------------------------------------------------------------ consensus_3826#1 GTCGAAAGTTTTCTTTGCAGGATTTGCAGTGACACATTAGAATTATTTACTATATTACAT 344 consensus_3826#0 -----------GGAAAGGAGGGAGAAGTAGTAAGCTAGAAGGATCAGATCATATTCCAGT 1181 consensus_3826#1 TGTCCACAGGTGGAAAGGAGGGAGAAGTAGTAAGCTAGAAGGATCAGATCATATTCCAGT 404 ************************************************* consensus_3826#0 TTATATTGTGCTGAATGAGATACCTGAACTTCCAGTTCATAACACTCCTTCATCAGCTGC 1241 consensus_3826#1 TTATATTGTGCTGAATGAGATACCTGAACTTCCAGTTCATAACACTCCTTCATCAGCTGC 464 ************************************************************ consensus_3826#0 TAGATATCTTCCTGAAATCCGTGGACGGCAACAGAGCATAGTATCATTCCTAAGGAAAGG 1301 consensus_3826#1 TAGATATCTTCCTGAAATCCGTGGACGGCAACAGAGCATAGTATCATTCCTAAGGAAAGG 524 ************************************************************ consensus_3826#0 CATGATTTATGAACATAAAGATGCCATGTCCATGGATAGAGCAGATGAAAGCTGCTGTGG 1361 consensus_3826#1 CATGATTTATGAACATAAAGATGCCATGTCCATGGATAGAGCAGATGAAAGCTGCTGTGG 584 ************************************************************ consensus_3826#0 TGGTGGCTTGGAAAGGAAAGCTATATATAAGGAAGAACCACCAACTGATATAGCCAAATT 1421 consensus_3826#1 TGGTGGCTT--------------------------------------------------- 593 ********* consensus_3826#0 TTCCAAAGGTAACGACCTTCATAGTGTCATCAAGCGGAAAATTCGTGATCAATTGTTAAA 1481 consensus_3826#1 ------------------------------------------------------------ consensus_3826#0 TGAAGGTTCAAGTGGCAACTCCCATAATAGCACTGCAGCATTACTGGCAACACAAAGTAG 1541 consensus_3826#1 ------------------------------------------------------------ consensus_3826#0 AAAAGCTTCCTTTTCTTGCAGCAAGGCTGTGTCCAACAAGAAAAACAAACATAACTTGTC 1601 consensus_3826#1 ------------------------------------------------------------ consensus_3826#0 TTCCCAACCTACGATCAAGTCATTTTTTCAACAACCAAAGTCAAAGCCAGGAGATAGCAG 1661 consensus_3826#1 ------------------------------------------------------------ consensus_3826#0 TACCAATAGCATAGTTACTCCACCAGATACTTTGCATGGTATGGATGAATTACATGATCC 1721 consensus_3826#1 ------------------------------------------------------------ consensus_3826#0 AAAGAATGACTGTCTGCCAGAAAGCATCCAGTGTACAACTCCAGCAACCGAAGATCAGGG 1781 consensus_3826#1 ------------------------------------------------------------ consensus_3826#0 TAACTCAGATGTACCCTGCTCGCTTTCAACAGATAAATGCAATGAAGCAACACTGGAGTG 1841 consensus_3826#1 ------------------------------------------------------------ consensus_3826#0 GCAAAGAATACAGCAGAGAATGAAGATGACCCTACCACTTTGCAAAGGACACCATGAACC 1901 consensus_3826#1 ------------------------------------------------------------ consensus_3826#0 TTGCATTCCAAGGTCTGTGAAGAAAGGCTCTAATATTGGTCGCCTATTCTATGTCTGTGC 1961 consensus_3826#1 ------------------------------------------------------------ consensus_3826#0 CCGTGCTCAGGGACCTGCATCAAACCAAGAAGCAAATTGTGGTCACTTTCAGTGGGCCAC 2021 consensus_3826#1 ------------------------------------------------------------ consensus_3826#0 TGTTAAGTCTAAAGAGAAACGCCGGTGACTAATTTCTCTTTTATCGCATAGGTGTAACAC 2081 consensus_3826#1 ------------------------------------------------------------ consensus_3826#0 TCACTCCTGGACATGTGTGTGTCACTTGTTTCTATACACATGAAATGCTGATGTTCTTCT 2141 consensus_3826#1 ------------------------------------------------------------ consensus_3826#0 CGGGAGCAAGCTGGTATTTGAGTCAGCAACTCGGCATTAATCTCTAGTTATGCATTACGC 2201 consensus_3826#1 ------------------------------------------------------------ consensus_3826#0 AGGTACATAATTTAATTTTGTGTTTAATTTAGATGGCTACCATGGCCTCCTTTGTTGTTT 2261 consensus_3826#1 ------------------------------------------------------------ consensus_3826#0 ACATATGTTATATTGTTTGGTCAAATGCCACCTTGTAGCTTTCTCGTAGTTTTGTTTTCT 2321 consensus_3826#1 ------------------------------------------------------------ consensus_3826#0 CGGGTTTGGCTAGCTTATGTTTGCAACTACCCTTGGATGTATTAATTGAAAAACTAGCTG 2381 consensus_3826#1 ------------------------------------------------------------ consensus_3826#0 AGAAGCATGAAAAGAAATCAAGTGAAGTAA 2411 consensus_3826#1 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||