These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3832#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 188 fasta sequence [CGAATCTCTTCTGTCCCCTTCCACCACCGTCCCCCCACAGGAGATGCTGCGCTGCCACACGCCGCCGCAATGCCGCCTCGGCGCGGGCGGCGCGGGCGCGGGGGTGCTGCTGAGGCAGNGGANANGTGTGGCGGTGCGGTGCCGTGNGCANAGGTNTCCGGGGTCGAGGCGGCGGCGGGGACACCGGC] [+] EMBL OSR1912A [CGAATCTCTTCTGTCCCCTTCCACCACCGTCCCCCCACAGGAGATGCTGCGCTGCCACACGCCGCCGCAATGCCGCCTCGGCGCGGGCGGCGCGGGCGCGGGGGTGCTGCTGAGGCAGNGGANANGTGTGGCGGTGCGGTGCCGTGNGCANAGGTNTCCGGGGTCGAGGCGGCGGCGGGGACACCGGC] consensusID : consensus_3832#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 180 fasta sequence [TCGAATCTCTTCTGTCCCCTTACACCACCGTCCCCCCACAGGAGATGCTGCGCTGNCACANGNCGCCNCAATGCCGCCTCGGCGCGGGCGGCGCGGGCGCGGGGGTGCTGNTGAGACAGCGAANAGGNNTGGCGGTGCGTTGCCGNGNNCANAGGTNTCCGGGGTCGAGGCGGCGGCGNG] [+] EMBL OSR1913A [TCGAATCTCTTCTGTCCCCTTACACCACCGTCCCCCCACAGGAGATGCTGCGCTGNCACANGNCGCCNCAATGCCGCCTCGGCGCGGGCGGCGCGGGCGCGGGGGTGCTGNTGAGACAGCGAANAGGNNTGGCGGTGCGTTGCCGNGNNCANAGGTNTCCGGGGTCGAGGCGGCGGCGNG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3832#0 -CGAATCTCTTCTGTCCCCTTCCACCACCGTCCCCCCACAGGAGATGCTGCGCTGCCACA 59 consensus_3832#1 TCGAATCTCTTCTGTCCCCTTACACCACCGTCCCCCCACAGGAGATGCTGCGCTGNCACA 60 ******************** ********************************* **** consensus_3832#0 CGCCGCCGCAATGCCGCCTCGGCGCGGGCGGCGCGGGCGCGGGGGTGCTGCTGAGGCAGN 119 consensus_3832#1 NGNCGCCNCAATGCCGCCTCGGCGCGGGCGGCGCGGGCGCGGGGGTGCTGNTGAGACAGC 120 * **** ****************************************** **** *** consensus_3832#0 GGANANGTGTGGCGGTGCGGTGCCGTGNGCANAGGTNTCCGGGGTCGAGGCGGCGGCGGG 179 consensus_3832#1 GAANAGGNNTGGCGGTGCGTTGCCGNGNNCANAGGTNTCCGGGGTCGAGGCGGCGGCGNG 180 * *** * ********** ***** ** ***************************** * consensus_3832#0 GACACCGGC 188 consensus_3832#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||