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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3832 cluster # 3832       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3832#0 length = 188 sequences # 1  
consensus_3832#1 length = 180 sequences # 1  

consensusID : consensus_3832#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 188
fasta sequence
                              [CGAATCTCTTCTGTCCCCTTCCACCACCGTCCCCCCACAGGAGATGCTGCGCTGCCACACGCCGCCGCAATGCCGCCTCGGCGCGGGCGGCGCGGGCGCGGGGGTGCTGCTGAGGCAGNGGANANGTGTGGCGGTGCGGTGCCGTGNGCANAGGTNTCCGGGGTCGAGGCGGCGGCGGGGACACCGGC]

[+] EMBL OSR1912A             [CGAATCTCTTCTGTCCCCTTCCACCACCGTCCCCCCACAGGAGATGCTGCGCTGCCACACGCCGCCGCAATGCCGCCTCGGCGCGGGCGGCGCGGGCGCGGGGGTGCTGCTGAGGCAGNGGANANGTGTGGCGGTGCGGTGCCGTGNGCANAGGTNTCCGGGGTCGAGGCGGCGGCGGGGACACCGGC]


>consensus_3832#0 CGAATCTCTTCTGTCCCCTTCCACCACCGTCCCCCCACAGGAGATGCTGCGCTGCCACAC GCCGCCGCAATGCCGCCTCGGCGCGGGCGGCGCGGGCGCGGGGGTGCTGCTGAGGCAGNG GANANGTGTGGCGGTGCGGTGCCGTGNGCANAGGTNTCCGGGGTCGAGGCGGCGGCGGGG ACACCGGC



consensusID : consensus_3832#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 180
fasta sequence
                              [TCGAATCTCTTCTGTCCCCTTACACCACCGTCCCCCCACAGGAGATGCTGCGCTGNCACANGNCGCCNCAATGCCGCCTCGGCGCGGGCGGCGCGGGCGCGGGGGTGCTGNTGAGACAGCGAANAGGNNTGGCGGTGCGTTGCCGNGNNCANAGGTNTCCGGGGTCGAGGCGGCGGCGNG]

[+] EMBL OSR1913A             [TCGAATCTCTTCTGTCCCCTTACACCACCGTCCCCCCACAGGAGATGCTGCGCTGNCACANGNCGCCNCAATGCCGCCTCGGCGCGGGCGGCGCGGGCGCGGGGGTGCTGNTGAGACAGCGAANAGGNNTGGCGGTGCGTTGCCGNGNNCANAGGTNTCCGGGGTCGAGGCGGCGGCGNG]


>consensus_3832#1 TCGAATCTCTTCTGTCCCCTTACACCACCGTCCCCCCACAGGAGATGCTGCGCTGNCACA NGNCGCCNCAATGCCGCCTCGGCGCGGGCGGCGCGGGCGCGGGGGTGCTGNTGAGACAGC GAANAGGNNTGGCGGTGCGTTGCCGNGNNCANAGGTNTCCGGGGTCGAGGCGGCGGCGNG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3832#0      -CGAATCTCTTCTGTCCCCTTCCACCACCGTCCCCCCACAGGAGATGCTGCGCTGCCACA 59
consensus_3832#1      TCGAATCTCTTCTGTCCCCTTACACCACCGTCCCCCCACAGGAGATGCTGCGCTGNCACA 60
                       ******************** ********************************* ****

consensus_3832#0      CGCCGCCGCAATGCCGCCTCGGCGCGGGCGGCGCGGGCGCGGGGGTGCTGCTGAGGCAGN 119
consensus_3832#1      NGNCGCCNCAATGCCGCCTCGGCGCGGGCGGCGCGGGCGCGGGGGTGCTGNTGAGACAGC 120
                       * **** ****************************************** **** *** 

consensus_3832#0      GGANANGTGTGGCGGTGCGGTGCCGTGNGCANAGGTNTCCGGGGTCGAGGCGGCGGCGGG 179
consensus_3832#1      GAANAGGNNTGGCGGTGCGTTGCCGNGNNCANAGGTNTCCGGGGTCGAGGCGGCGGCGNG 180
                      * *** *  ********** ***** ** ***************************** *

consensus_3832#0      GACACCGGC 188
consensus_3832#1      ---------
                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)