These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3840#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 830 fasta sequence [TGCCGCCGGCGGCGTCGATGATGGGTTCGTGTATAGTGGATTCTCAAGCAGTAGCAGCAACCTCGTCCTCGATGGTGCCGCGTACATTGGGGAAGACGGCATACTCACTCTGACGAATAGCACCGAGTACAATGCCCAGGGGCACTGCTTCCTCCCCCAGCCTGTTGCCCTCTTCAATTCTTCCTCTAAGGAGAGATATATTCGCACTCTCTTTATCTTCAGTATCACACCGGGCAACTTGTCCAGCATCTCCGGCCAGGGAATGGCCTTCATCGTCTCGCCTACCCAAAACTTCTCCGATGCTTCCTCCTGGTACGGGGACTCGTTATACTCGAACAAGCTCGCTGTGGAGCTCGACAGCGTCCATAGGATGGACAACGTTCGGGTTAATCTTGATAGCTTGACACCCATCGCTTCTAATCCTTCAGGTTTTGTTAATTACAACGATGACTTCCAACCTCTCAGCCTCACCAGTGGCGACCTGATGCAGGCATGGATAGACATGACCTATGACGGAGTAGGGTTATTGCTTGAGGTCACCTTGGCTCCGTTTCCAATGGACAAGCCTATCGCACCATTACTAAGGTGTTACCTCAACTCTTCAACCGCCACAGCTATTATCAGAGATCATGGGTACGTGTACATTGGTTTCTCAGCTTCCACCAGCTATGATAAAATTGCCACTCATCAGGTTCATGGCTGGAGCTTAATGATGAATGGACCGGCGAAACCGCTGGACTATCAGTCGATAATGGCACACGTTCATAGACCACGTGCCAACCAGTACCGGAGCTTGCTCAGATGGTTGCCGGCGACCTTGTCCTTTTCTC] [+] EMBL CB634886 [TGCCGCCGGCGGCGTCGATGATGGGTTCGTGTATAGTGGATTCTCAAGCAGTAGCAGCAACCTCGTCCTCGATGGTGCCGCGTACATTGGGGAAGACGGCATACTCACTCTGACGAATAGCACCGAGTACAATGCCCAGGGGCACTGCTTCCTCCCCCAGCCTGTTGCCCTCTTCAATTCTTCCTCTAAGGAGAGATATATTCGCACTCTCTTTATCTTCAGTATCACACCGGGCAACTTGTCCAGCATCTCCGGCCAGGGAATGGCCTTCATCGTCTCGCCTACCCAAAACTTCTCCGATGCTTCCTCCTGGTACGGGGACTCGTTATACTCGAACAAGCTCGCTGTGGAGCTCGACAGCGTCCATAGGATGGACAACGTTCGGGTTAATCTTGATAGCTTGACACCCATCGCTTCTAATCCTTCAGGTTTTGTTAATTACAACGATGACTTCCAACCTCTCAGCCTCACCAGTGGCGACCTGATGCAGGCATGGATAGACATGACCTATGACGGAGTAGGGTTATTGCTTGAGGTCACCTTGGCTCCGTTTCCAATGGACAAGCCTATCGCACCATTACTAAGGTGTTACCTCAACTCTTCAACCGCCACAGCTATTATCAGAGATCATGGGTACGTGTACATTGGTTTCTCAGCTTCCACCAGCTATGATAAAATTGCCACTCATCAGGTTCATGGCTGGAGCTTAATGATGAATGGACCGGCGAAACCGCTGGACTATCAGTCGATAATGGCACACGTTCATAGACCACGTGCCAACCAGTACCGGAGCTTGCTCAGATGGTTGCCGGCGACCTTGTCCTTTTCTC] consensusID : consensus_3840#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 739 fasta sequence [ATCTTCATCAAAGAGGTTGCCGTAGGCGGCGTCGATGATGGGTTCGTGTATAGTGGATTCTCAAGCAGTAGCAGCAATCTCAAAATCGATGGTGCCGCGTACATTGGGGAAGACGGCATACTCACTCTGACGAATAGCACCGAGTACAATGCCCAGGGGCACTGCTTCCTCCCCCAGCCTGTTGCCCTCTTCAATTCTTCCTCTAAGGAGAGATATATTCGCACTCTCTTTATCTTCAGTATCACACCGGGCAACTTGTCCAGCATCTCCGGCCAGGGAATGGCCTTCATCGTCTCTCCTACCCAAAACTTCTCCGATGCTTCCTCCTGGTTTTGTTAATTACAACGATGACTTCCAACCTCTCAGCCTCACCAGTGGCGACCTGATGCAGGCATGGATAGACATGACCTATGACGGAGTAGGGTTATTGCTTGAGGTCACCTTGGCTCCGTTTCCAATGGACAAGCCTATCGCACCATTACTAAGGTGTTACCTCAACTCTTCAACCGCCACAGCTATTATCAGAGATCATGGGTACGTGTACATTGGTTTCTCAGCTTCCACCAGCTATGATAAAATTGCCACTCATCAGGTTCATGGCTGGAGCTTAATGATGAATGGACCGGCGAAACCGCTGGACTATCAGTCGATAATGGCACACGTTCATAGACCACGTGCCAACCAGTACCGGAGCTTGCTCAGATGGTTGCCGGCGACCTTGTTCTTTTCTTCTCCTTCT] [+] EMBL CB634230 [ATCTTCATCAAAGAGGTTGCCGTAGGCGGCGTCGATGATGGGTTCGTGTATAGTGGATTCTCAAGCAGTAGCAGCAATCTCAAAATCGATGGTGCCGCGTACATTGGGGAAGACGGCATACTCACTCTGACGAATAGCACCGAGTACAATGCCCAGGGGCACTGCTTCCTCCCCCAGCCTGTTGCCCTCTTCAATTCTTCCTCTAAGGAGAGATATATTCGCACTCTCTTTATCTTCAGTATCACACCGGGCAACTTGTCCAGCATCTCCGGCCAGGGAATGGCCTTCATCGTCTCTCCTACCCAAAACTTCTCCGATGCTTCCTCCTGGTTTTGTTAATTACAACGATGACTTCCAACCTCTCAGCCTCACCAGTGGCGACCTGATGCAGGCATGGATAGACATGACCTATGACGGAGTAGGGTTATTGCTTGAGGTCACCTTGGCTCCGTTTCCAATGGACAAGCCTATCGCACCATTACTAAGGTGTTACCTCAACTCTTCAACCGCCACAGCTATTATCAGAGATCATGGGTACGTGTACATTGGTTTCTCAGCTTCCACCAGCTATGATAAAATTGCCACTCATCAGGTTCATGGCTGGAGCTTAATGATGAATGGACCGGCGAAACCGCTGGACTATCAGTCGATAATGGCACACGTTCATAGACCACGTGCCAACCAGTACCGGAGCTTGCTCAGATGGTTGCCGGCGACCTTGTTCTTTTCTTCTCCTTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3840#0 -----------------TGCCGCCGGCGGCGTCGATGATGGGTTCGTGTATAGTGGATTC 43 consensus_3840#1 ATCTTCATCAAAGAGGTTGCCGTAGGCGGCGTCGATGATGGGTTCGTGTATAGTGGATTC 60 ***** ************************************ consensus_3840#0 TCAAGCAGTAGCAGCAACCTCGTCCTCGATGGTGCCGCGTACATTGGGGAAGACGGCATA 103 consensus_3840#1 TCAAGCAGTAGCAGCAATCTCAAAATCGATGGTGCCGCGTACATTGGGGAAGACGGCATA 120 ***************** *** *********************************** consensus_3840#0 CTCACTCTGACGAATAGCACCGAGTACAATGCCCAGGGGCACTGCTTCCTCCCCCAGCCT 163 consensus_3840#1 CTCACTCTGACGAATAGCACCGAGTACAATGCCCAGGGGCACTGCTTCCTCCCCCAGCCT 180 ************************************************************ consensus_3840#0 GTTGCCCTCTTCAATTCTTCCTCTAAGGAGAGATATATTCGCACTCTCTTTATCTTCAGT 223 consensus_3840#1 GTTGCCCTCTTCAATTCTTCCTCTAAGGAGAGATATATTCGCACTCTCTTTATCTTCAGT 240 ************************************************************ consensus_3840#0 ATCACACCGGGCAACTTGTCCAGCATCTCCGGCCAGGGAATGGCCTTCATCGTCTCGCCT 283 consensus_3840#1 ATCACACCGGGCAACTTGTCCAGCATCTCCGGCCAGGGAATGGCCTTCATCGTCTCTCCT 300 ******************************************************** *** consensus_3840#0 ACCCAAAACTTCTCCGATGCTTCCTCCTGGTACGGGGACTCGTTATACTCGAACAAGCTC 343 consensus_3840#1 ACCCAAAACTTCTCCGATGCTTCCTCCTGGT----------------------------- 331 ******************************* consensus_3840#0 GCTGTGGAGCTCGACAGCGTCCATAGGATGGACAACGTTCGGGTTAATCTTGATAGCTTG 403 consensus_3840#1 ------------------------------------------------------------ consensus_3840#0 ACACCCATCGCTTCTAATCCTTCAGGTTTTGTTAATTACAACGATGACTTCCAACCTCTC 463 consensus_3840#1 ---------------------------TTTGTTAATTACAACGATGACTTCCAACCTCTC 364 ********************************* consensus_3840#0 AGCCTCACCAGTGGCGACCTGATGCAGGCATGGATAGACATGACCTATGACGGAGTAGGG 523 consensus_3840#1 AGCCTCACCAGTGGCGACCTGATGCAGGCATGGATAGACATGACCTATGACGGAGTAGGG 424 ************************************************************ consensus_3840#0 TTATTGCTTGAGGTCACCTTGGCTCCGTTTCCAATGGACAAGCCTATCGCACCATTACTA 583 consensus_3840#1 TTATTGCTTGAGGTCACCTTGGCTCCGTTTCCAATGGACAAGCCTATCGCACCATTACTA 484 ************************************************************ consensus_3840#0 AGGTGTTACCTCAACTCTTCAACCGCCACAGCTATTATCAGAGATCATGGGTACGTGTAC 643 consensus_3840#1 AGGTGTTACCTCAACTCTTCAACCGCCACAGCTATTATCAGAGATCATGGGTACGTGTAC 544 ************************************************************ consensus_3840#0 ATTGGTTTCTCAGCTTCCACCAGCTATGATAAAATTGCCACTCATCAGGTTCATGGCTGG 703 consensus_3840#1 ATTGGTTTCTCAGCTTCCACCAGCTATGATAAAATTGCCACTCATCAGGTTCATGGCTGG 604 ************************************************************ consensus_3840#0 AGCTTAATGATGAATGGACCGGCGAAACCGCTGGACTATCAGTCGATAATGGCACACGTT 763 consensus_3840#1 AGCTTAATGATGAATGGACCGGCGAAACCGCTGGACTATCAGTCGATAATGGCACACGTT 664 ************************************************************ consensus_3840#0 CATAGACCACGTGCCAACCAGTACCGGAGCTTGCTCAGATGGTTGCCGGCGACCTTGTCC 823 consensus_3840#1 CATAGACCACGTGCCAACCAGTACCGGAGCTTGCTCAGATGGTTGCCGGCGACCTTGTTC 724 ********************************************************** * consensus_3840#0 TTTTCTC-------- 830 consensus_3840#1 TTTTCTTCTCCTTCT 739 ****** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||