These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3846#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence [TGCTGGCCGGAACCCTAGCCACGGCGGCACGGCACGGCGGCAGGGCGGCACGGCGCGGCGGCGCCGTCGCACCCCCCTTTGCCGGCGCGCGCACTCACCCGAGAGTGAGTGCGCCGCCGTCGAGCGGCTGTGCAGCGGCGCCCGGCAAGCCGGCGGCGCGGCGCCGCCCCCTCTTTTCTCTCCCGCGTCGGCGTGAGGACGACCGGTGGTGGCATGACTCCCGCGCGCGTCGGCGGCGGCCGGCGGCGGCGGTAGGCATCTTCGACGCGAATGAGAACATTCAGTTGCCGCAAGCGCCATCGCATCACCGAGCCGCCCCCATCGATGCGTCTAGGGGAGTACTATCAGATGACCTAATTTAACCTGGTTTTGTAAGTTTGGGTTTTTGGTAAATATGAGAGACCAAAAGTGAACTTATTGCAAGCCTGAATGATATATTACTTGGGCCGGATTA] [+] EMBL AK107808 [TGCTGGCCGGAACCCTAGCCACGGCGGCACGGCACGGCGGCAGGGCGGCACGGCGCGGCGGCGCCGTCGCACCCCCCTTTGCCGGCGCGCGCACTCACCCGAGAGTGAGTGCGCCGCCGTCGAGCGGCTGTGCAGCGGCGCCCGGCAAGCCGGCGGCGCGGCGCCGCCCCCTCTTTTCTCTCCCGCGTCGGCGTGAGGACGACCGGTGGTGGCATGACTCCCGCGCGCGTCGGCGGCGGCCGGCGGCGGCGGTAGGCATCTTCGACGCGAATGAGAACATTCAGTTGCCGCAAGCGCCATCGCATCACCGAGCCGCCCCCATCGATGCGTCTAGGGGAGTACTATCAGATGACCTAATTTAACCTGGTTTTGTAAGTTTGGGTTTTTGGTAAATATGAGAGACCAAAAGTGAACTTATTGCAAGCCTGAATGATATATTACTTGGGCCGGATTA] consensusID : consensus_3846#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 397 fasta sequence [ACGGCACGGCGGCAGGGCGGCACGGCGCGGCGGCGCCGTCGCACCCCCCTTTGCCGGCGCGCGCACTCACCCGAGAGTGAGTGCGCCGCCGTCGAGCGGCTGTGCAGCGGCGCCCGGCAAGCCGGCGGCGCGGCGCCGCCCCCTCTTTTCTCTCCCGCGTCGGCGTGAGGACGACCGGTGGTGGCATGACTCCCGCGCGCGTCGGCGGCGGCCGGCGGCGGCGGTAGGTGAGTCTTTTCTTTTCGACCCGTGCGGATCGTGTGCTGTTCTTTCTTTTGCTCTTTTCCGGGGATCAATTCCCCTCTTCTTTTTATTTGGATTTCTATCCCCGAACCGATCTAAGCCCTAGGGTTGGTCTGATACCATTGTTAGAGTTCTCTGTTGGATCACCTAAAAA] [+] EMBL AU183144 [ACGGCACGGCGGCAGGGCGGCACGGCGCGGCGGCGCCGTCGCACCCCCCTTTGCCGGCGCGCGCACTCACCCGAGAGTGAGTGCGCCGCCGTCGAGCGGCTGTGCAGCGGCGCCCGGCAAGCCGGCGGCGCGGCGCCGCCCCCTCTTTTCTCTCCCGCGTCGGCGTGAGGACGACCGGTGGTGGCATGACTCCCGCGCGCGTCGGCGGCGGCCGGCGGCGGCGGTAGGTGAGTCTTTTCTTTTCGACCCGTGCGGATCGTGTGCTGTTCTTTCTTTTGCTCTTTTCCGGGGATCAATTCCCCTCTTCTTTTTATTTGGATTTCTATCCCCGAACCGATCTAAGCCCTAGGGTTGGTCTGATACCATTGTTAGAGTTCTCTGTTGGATCACCTAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3846#0 TGCTGGCCGGAACCCTAGCCACGGCGGCACGGCACGGCGGCAGGGCGGCACGGCGCGGCG 60 consensus_3846#1 ----------------------------ACGGCACGGCGGCAGGGCGGCACGGCGCGGCG 32 ******************************** consensus_3846#0 GCGCCGTCGCACCCCCCTTTGCCGGCGCGCGCACTCACCCGAGAGTGAGTGCGCCGCCGT 120 consensus_3846#1 GCGCCGTCGCACCCCCCTTTGCCGGCGCGCGCACTCACCCGAGAGTGAGTGCGCCGCCGT 92 ************************************************************ consensus_3846#0 CGAGCGGCTGTGCAGCGGCGCCCGGCAAGCCGGCGGCGCGGCGCCGCCCCCTCTTTTCTC 180 consensus_3846#1 CGAGCGGCTGTGCAGCGGCGCCCGGCAAGCCGGCGGCGCGGCGCCGCCCCCTCTTTTCTC 152 ************************************************************ consensus_3846#0 TCCCGCGTCGGCGTGAGGACGACCGGTGGTGGCATGACTCCCGCGCGCGTCGGCGGCGGC 240 consensus_3846#1 TCCCGCGTCGGCGTGAGGACGACCGGTGGTGGCATGACTCCCGCGCGCGTCGGCGGCGGC 212 ************************************************************ consensus_3846#0 CGGCGGCGGCGGTAGGCA---------TCTTCGACGCGAATGAGA-ACATTCAGTTGCCG 290 consensus_3846#1 CGGCGGCGGCGGTAGGTGAGTCTTTTCTTTTCGACCCGTGCGGATCGTGTGCTGTTCTTT 272 **************** * ****** ** * * * *** consensus_3846#0 CAAGCGCCATCGCATCACCGAGCCGCCCCCATCGATGCGTCTAGGGGAGTACTATCAGAT 350 consensus_3846#1 CTTTTGCTCTT-TTCCGGGGATCAATTCCCCTCTTCTTTTTATTTGGATTTCTATC---- 327 * ** * * ** * *** ** * *** * ***** consensus_3846#0 GACCTAATTTAACCTGGTTTTGTAAGTTTGGGTTTTTGGTAAATATGAGAGACCAAAAGT 410 consensus_3846#1 --CCCGAACCGATCTAAGCCCTAGGGTT--GGTCTGATACCATTGTTAGAGTTCTCTGTT 383 ** * * ** *** *** * * * * **** * * consensus_3846#0 GAACTTATTGCAAGCCTGAATGATATATTACTTGGGCCGGATTA 454 consensus_3846#1 GGATCACCTAAAAA------------------------------ 397 * * * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||