These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3848#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 801 fasta sequence [ATTACGTTGGTGGGGACTCTTGTTCATTAGGAGAAGATCAAGAGGTTGAGGAAATTAGGAAGGCATACAAGGAGTTTAAGAAGAAGCTAAAGGATGGTGAGGTAGGAAATTTAGATGATGTGATCTATATGGGGTCTTCAAGACAGATTAATGATGGAGCCTTGGTTCAGATTCAGGGTGAGGAAGATAATAGCCCATATGAGAACAGCAGTGCAGATGGTGATTCATATGAAGAGGATAGTGATGGACAGTTGGTCAGAAAGAAGTCCAAATACCCCATATTTAATGCCAACCAGCCCCATGTTAGGCTTGCTCTTGGGATGAAATTTGATGGGAAAAAAGAGTTTAAGGAGGCAGTGGTCCAGCTAGCCTTGCAGAACAAAAGATTCATAAGGTTCCCCAAAGATGAAGGTTACAGGACAAGGGCAAAGTGTGACTGGGCAACCTGTCCATGGAGTTGTTTGCTATCAAGGAACAGCAGGACAAATAGCTGGCAAATAGCAAGTCTTGTTGATGAGCACAATTGTCCTCCAAGGAAGGATAACAACCTGGTCACATACAAGAGAATTGCTCAGAAATATGAGAAGACGATCATAGATAACCCAACTTGGAGTATTCAGAGCATGCAGTCAACTGTCTCTGAGCAAATGTTTGCAAATGTCAGTGCATCTTAGTGCAAGAGAGCAAAAGCATATGTCCTGAAGAAGATATATGAGTCTAGAAGGGATGAATACTCCAGAATTTTTGATTATCAATTGGAATTGTTGAGGAGTAATCCTGGGAGTATAGTTGTTGTCAAGC] [+] EMBL CB634491 [ATTACGTTGGTGGGGACTCTTGTTCATTAGGAGAAGATCAAGAGGTTGAGGAAATTAGGAAGGCATACAAGGAGTTTAAGAAGAAGCTAAAGGATGGTGAGGTAGGAAATTTAGATGATGTGATCTATATGGGGTCTTCAAGACAGATTAATGATGGAGCCTTGGTTCAGATTCAGGGTGAGGAAGATAATAGCCCATATGAGAACAGCAGTGCAGATGGTGATTCATATGAAGAGGATAGTGATGGACAGTTGGTCAGAAAGAAGTCCAAATACCCCATATTTAATGCCAACCAGCCCCATGTTAGGCTTGCTCTTGGGATGAAATTTGATGGGAAAAAAGAGTTTAAGGAGGCAGTGGTCCAGCTAGCCTTGCAGAACAAAAGATTCATAAGGTTCCCCAAAGATGAAGGTTACAGGACAAGGGCAAAGTGTGACTGGGCAACCTGTCCATGGAGTTGTTTGCTATCAAGGAACAGCAGGACAAATAGCTGGCAAATAGCAAGTCTTGTTGATGAGCACAATTGTCCTCCAAGGAAGGATAACAACCTGGTCACATACAAGAGAATTGCTCAGAAATATGAGAAGACGATCATAGATAACCCAACTTGGAGTATTCAGAGCATGCAGTCAACTGTCTCTGAGCAAATGTTTGCAAATGTCAGTGCATCTTAGTGCAAGAGAGCAAAAGCATATGTCCTGAAGAAGATATATGAGTCTAGAAGGGATGAATACTCCAGAATTTTTGATTATCAATTGGAATTGTTGAGGAGTAATCCTGGGAGTATAGTTGTTGTCAAGC] consensusID : consensus_3848#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 670 fasta sequence [ATTACCCCCTTGGGGACTCTTGTTCATTAGGAGAAGATCAAGAGGTTGAGGAAATTAGGAAGGCATACAAGGGAGTTTAACACACTAAGCTAAAGGATGGTGAGGTAGGAAATTTAGATGATGTGATCTATATGGGGTCTTCAAGACAGATTAATGATGGAGCCTTGGTTCAGATTCAGGGTGAGGAAGATAATAGCCCATATGAGAACAGCAGTGCAGATGGTGATTCATATGAAGAGGATAGTGATGGACAGTTGGTCAGAAAGAAGTCCAAATACCCCATATTTAATGCCAACCAGCCCCATGTTAGGCTTGCTCTTGGGATGAAATTTGATGGGAAAAAAGAGTTTAAGGAGGCAGTGGTCCAGCTAGCCTTGCAGAACAAAAGATTCATAAGGTTCCCCAAAGATGAAGGTTACAGGACAAGGGCAAAGTGTGACTGGGCAACCTGTCCATGGAGTTGTTTGCTATCAAGGAACAGCAGGACAAATAGCTGGCAAATAGCAAGTCTTGTTGATGAGCACAATTGTCCTCCAAGGAAGGATAACAACCTGGTCACATACAAGAGAATTGCTCACAAATATGAGAAGACGATCATAGATAACCCAACTTGGAGTATTCAGAGCATGCAGTCAACTGTCTCTGAGCAAATGTTTGCAAATGTCATTGC] [+] EMBL CB634555 [ATTACCCCCTTGGGGACTCTTGTTCATTAGGAGAAGATCAAGAGGTTGAGGAAATTAGGAAGGCATACAAGGGAGTTTAACACACTAAGCTAAAGGATGGTGAGGTAGGAAATTTAGATGATGTGATCTATATGGGGTCTTCAAGACAGATTAATGATGGAGCCTTGGTTCAGATTCAGGGTGAGGAAGATAATAGCCCATATGAGAACAGCAGTGCAGATGGTGATTCATATGAAGAGGATAGTGATGGACAGTTGGTCAGAAAGAAGTCCAAATACCCCATATTTAATGCCAACCAGCCCCATGTTAGGCTTGCTCTTGGGATGAAATTTGATGGGAAAAAAGAGTTTAAGGAGGCAGTGGTCCAGCTAGCCTTGCAGAACAAAAGATTCATAAGGTTCCCCAAAGATGAAGGTTACAGGACAAGGGCAAAGTGTGACTGGGCAACCTGTCCATGGAGTTGTTTGCTATCAAGGAACAGCAGGACAAATAGCTGGCAAATAGCAAGTCTTGTTGATGAGCACAATTGTCCTCCAAGGAAGGATAACAACCTGGTCACATACAAGAGAATTGCTCACAAATATGAGAAGACGATCATAGATAACCCAACTTGGAGTATTCAGAGCATGCAGTCAACTGTCTCTGAGCAAATGTTTGCAAATGTCATTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3848#0 ATTACGTTGGTGGGGACTCTTGTTCATTAGGAGAAGATCAAGAGGTTGAGGAAATTAGGA 60 consensus_3848#1 ATTACCCCCTTGGGGACTCTTGTTCATTAGGAGAAGATCAAGAGGTTGAGGAAATTAGGA 60 ***** ************************************************** consensus_3848#0 AGGCATACAAGG-AGTTTAAGAAG--AAGCTAAAGGATGGTGAGGTAGGAAATTTAGATG 117 consensus_3848#1 AGGCATACAAGGGAGTTTAACACACTAAGCTAAAGGATGGTGAGGTAGGAAATTTAGATG 120 ************ ******* * ********************************** consensus_3848#0 ATGTGATCTATATGGGGTCTTCAAGACAGATTAATGATGGAGCCTTGGTTCAGATTCAGG 177 consensus_3848#1 ATGTGATCTATATGGGGTCTTCAAGACAGATTAATGATGGAGCCTTGGTTCAGATTCAGG 180 ************************************************************ consensus_3848#0 GTGAGGAAGATAATAGCCCATATGAGAACAGCAGTGCAGATGGTGATTCATATGAAGAGG 237 consensus_3848#1 GTGAGGAAGATAATAGCCCATATGAGAACAGCAGTGCAGATGGTGATTCATATGAAGAGG 240 ************************************************************ consensus_3848#0 ATAGTGATGGACAGTTGGTCAGAAAGAAGTCCAAATACCCCATATTTAATGCCAACCAGC 297 consensus_3848#1 ATAGTGATGGACAGTTGGTCAGAAAGAAGTCCAAATACCCCATATTTAATGCCAACCAGC 300 ************************************************************ consensus_3848#0 CCCATGTTAGGCTTGCTCTTGGGATGAAATTTGATGGGAAAAAAGAGTTTAAGGAGGCAG 357 consensus_3848#1 CCCATGTTAGGCTTGCTCTTGGGATGAAATTTGATGGGAAAAAAGAGTTTAAGGAGGCAG 360 ************************************************************ consensus_3848#0 TGGTCCAGCTAGCCTTGCAGAACAAAAGATTCATAAGGTTCCCCAAAGATGAAGGTTACA 417 consensus_3848#1 TGGTCCAGCTAGCCTTGCAGAACAAAAGATTCATAAGGTTCCCCAAAGATGAAGGTTACA 420 ************************************************************ consensus_3848#0 GGACAAGGGCAAAGTGTGACTGGGCAACCTGTCCATGGAGTTGTTTGCTATCAAGGAACA 477 consensus_3848#1 GGACAAGGGCAAAGTGTGACTGGGCAACCTGTCCATGGAGTTGTTTGCTATCAAGGAACA 480 ************************************************************ consensus_3848#0 GCAGGACAAATAGCTGGCAAATAGCAAGTCTTGTTGATGAGCACAATTGTCCTCCAAGGA 537 consensus_3848#1 GCAGGACAAATAGCTGGCAAATAGCAAGTCTTGTTGATGAGCACAATTGTCCTCCAAGGA 540 ************************************************************ consensus_3848#0 AGGATAACAACCTGGTCACATACAAGAGAATTGCTCAGAAATATGAGAAGACGATCATAG 597 consensus_3848#1 AGGATAACAACCTGGTCACATACAAGAGAATTGCTCACAAATATGAGAAGACGATCATAG 600 ************************************* ********************** consensus_3848#0 ATAACCCAACTTGGAGTATTCAGAGCATGCAGTCAACTGTCTCTGAGCAAATGTTTGCAA 657 consensus_3848#1 ATAACCCAACTTGGAGTATTCAGAGCATGCAGTCAACTGTCTCTGAGCAAATGTTTGCAA 660 ************************************************************ consensus_3848#0 ATGTCAGTGCATCTTAGTGCAAGAGAGCAAAAGCATATGTCCTGAAGAAGATATATGAGT 717 consensus_3848#1 ATGTCATTGC-------------------------------------------------- 670 ****** *** consensus_3848#0 CTAGAAGGGATGAATACTCCAGAATTTTTGATTATCAATTGGAATTGTTGAGGAGTAATC 777 consensus_3848#1 ------------------------------------------------------------ consensus_3848#0 CTGGGAGTATAGTTGTTGTCAAGC 801 consensus_3848#1 ------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||