|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3848#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 801 fasta sequence
[ATTACGTTGGTGGGGACTCTTGTTCATTAGGAGAAGATCAAGAGGTTGAGGAAATTAGGAAGGCATACAAGGAGTTTAAGAAGAAGCTAAAGGATGGTGAGGTAGGAAATTTAGATGATGTGATCTATATGGGGTCTTCAAGACAGATTAATGATGGAGCCTTGGTTCAGATTCAGGGTGAGGAAGATAATAGCCCATATGAGAACAGCAGTGCAGATGGTGATTCATATGAAGAGGATAGTGATGGACAGTTGGTCAGAAAGAAGTCCAAATACCCCATATTTAATGCCAACCAGCCCCATGTTAGGCTTGCTCTTGGGATGAAATTTGATGGGAAAAAAGAGTTTAAGGAGGCAGTGGTCCAGCTAGCCTTGCAGAACAAAAGATTCATAAGGTTCCCCAAAGATGAAGGTTACAGGACAAGGGCAAAGTGTGACTGGGCAACCTGTCCATGGAGTTGTTTGCTATCAAGGAACAGCAGGACAAATAGCTGGCAAATAGCAAGTCTTGTTGATGAGCACAATTGTCCTCCAAGGAAGGATAACAACCTGGTCACATACAAGAGAATTGCTCAGAAATATGAGAAGACGATCATAGATAACCCAACTTGGAGTATTCAGAGCATGCAGTCAACTGTCTCTGAGCAAATGTTTGCAAATGTCAGTGCATCTTAGTGCAAGAGAGCAAAAGCATATGTCCTGAAGAAGATATATGAGTCTAGAAGGGATGAATACTCCAGAATTTTTGATTATCAATTGGAATTGTTGAGGAGTAATCCTGGGAGTATAGTTGTTGTCAAGC]
[+] EMBL CB634491 [ATTACGTTGGTGGGGACTCTTGTTCATTAGGAGAAGATCAAGAGGTTGAGGAAATTAGGAAGGCATACAAGGAGTTTAAGAAGAAGCTAAAGGATGGTGAGGTAGGAAATTTAGATGATGTGATCTATATGGGGTCTTCAAGACAGATTAATGATGGAGCCTTGGTTCAGATTCAGGGTGAGGAAGATAATAGCCCATATGAGAACAGCAGTGCAGATGGTGATTCATATGAAGAGGATAGTGATGGACAGTTGGTCAGAAAGAAGTCCAAATACCCCATATTTAATGCCAACCAGCCCCATGTTAGGCTTGCTCTTGGGATGAAATTTGATGGGAAAAAAGAGTTTAAGGAGGCAGTGGTCCAGCTAGCCTTGCAGAACAAAAGATTCATAAGGTTCCCCAAAGATGAAGGTTACAGGACAAGGGCAAAGTGTGACTGGGCAACCTGTCCATGGAGTTGTTTGCTATCAAGGAACAGCAGGACAAATAGCTGGCAAATAGCAAGTCTTGTTGATGAGCACAATTGTCCTCCAAGGAAGGATAACAACCTGGTCACATACAAGAGAATTGCTCAGAAATATGAGAAGACGATCATAGATAACCCAACTTGGAGTATTCAGAGCATGCAGTCAACTGTCTCTGAGCAAATGTTTGCAAATGTCAGTGCATCTTAGTGCAAGAGAGCAAAAGCATATGTCCTGAAGAAGATATATGAGTCTAGAAGGGATGAATACTCCAGAATTTTTGATTATCAATTGGAATTGTTGAGGAGTAATCCTGGGAGTATAGTTGTTGTCAAGC]
consensusID : consensus_3848#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 670 fasta sequence
[ATTACCCCCTTGGGGACTCTTGTTCATTAGGAGAAGATCAAGAGGTTGAGGAAATTAGGAAGGCATACAAGGGAGTTTAACACACTAAGCTAAAGGATGGTGAGGTAGGAAATTTAGATGATGTGATCTATATGGGGTCTTCAAGACAGATTAATGATGGAGCCTTGGTTCAGATTCAGGGTGAGGAAGATAATAGCCCATATGAGAACAGCAGTGCAGATGGTGATTCATATGAAGAGGATAGTGATGGACAGTTGGTCAGAAAGAAGTCCAAATACCCCATATTTAATGCCAACCAGCCCCATGTTAGGCTTGCTCTTGGGATGAAATTTGATGGGAAAAAAGAGTTTAAGGAGGCAGTGGTCCAGCTAGCCTTGCAGAACAAAAGATTCATAAGGTTCCCCAAAGATGAAGGTTACAGGACAAGGGCAAAGTGTGACTGGGCAACCTGTCCATGGAGTTGTTTGCTATCAAGGAACAGCAGGACAAATAGCTGGCAAATAGCAAGTCTTGTTGATGAGCACAATTGTCCTCCAAGGAAGGATAACAACCTGGTCACATACAAGAGAATTGCTCACAAATATGAGAAGACGATCATAGATAACCCAACTTGGAGTATTCAGAGCATGCAGTCAACTGTCTCTGAGCAAATGTTTGCAAATGTCATTGC]
[+] EMBL CB634555 [ATTACCCCCTTGGGGACTCTTGTTCATTAGGAGAAGATCAAGAGGTTGAGGAAATTAGGAAGGCATACAAGGGAGTTTAACACACTAAGCTAAAGGATGGTGAGGTAGGAAATTTAGATGATGTGATCTATATGGGGTCTTCAAGACAGATTAATGATGGAGCCTTGGTTCAGATTCAGGGTGAGGAAGATAATAGCCCATATGAGAACAGCAGTGCAGATGGTGATTCATATGAAGAGGATAGTGATGGACAGTTGGTCAGAAAGAAGTCCAAATACCCCATATTTAATGCCAACCAGCCCCATGTTAGGCTTGCTCTTGGGATGAAATTTGATGGGAAAAAAGAGTTTAAGGAGGCAGTGGTCCAGCTAGCCTTGCAGAACAAAAGATTCATAAGGTTCCCCAAAGATGAAGGTTACAGGACAAGGGCAAAGTGTGACTGGGCAACCTGTCCATGGAGTTGTTTGCTATCAAGGAACAGCAGGACAAATAGCTGGCAAATAGCAAGTCTTGTTGATGAGCACAATTGTCCTCCAAGGAAGGATAACAACCTGGTCACATACAAGAGAATTGCTCACAAATATGAGAAGACGATCATAGATAACCCAACTTGGAGTATTCAGAGCATGCAGTCAACTGTCTCTGAGCAAATGTTTGCAAATGTCATTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3848#0 ATTACGTTGGTGGGGACTCTTGTTCATTAGGAGAAGATCAAGAGGTTGAGGAAATTAGGA 60
consensus_3848#1 ATTACCCCCTTGGGGACTCTTGTTCATTAGGAGAAGATCAAGAGGTTGAGGAAATTAGGA 60
***** **************************************************
consensus_3848#0 AGGCATACAAGG-AGTTTAAGAAG--AAGCTAAAGGATGGTGAGGTAGGAAATTTAGATG 117
consensus_3848#1 AGGCATACAAGGGAGTTTAACACACTAAGCTAAAGGATGGTGAGGTAGGAAATTTAGATG 120
************ ******* * **********************************
consensus_3848#0 ATGTGATCTATATGGGGTCTTCAAGACAGATTAATGATGGAGCCTTGGTTCAGATTCAGG 177
consensus_3848#1 ATGTGATCTATATGGGGTCTTCAAGACAGATTAATGATGGAGCCTTGGTTCAGATTCAGG 180
************************************************************
consensus_3848#0 GTGAGGAAGATAATAGCCCATATGAGAACAGCAGTGCAGATGGTGATTCATATGAAGAGG 237
consensus_3848#1 GTGAGGAAGATAATAGCCCATATGAGAACAGCAGTGCAGATGGTGATTCATATGAAGAGG 240
************************************************************
consensus_3848#0 ATAGTGATGGACAGTTGGTCAGAAAGAAGTCCAAATACCCCATATTTAATGCCAACCAGC 297
consensus_3848#1 ATAGTGATGGACAGTTGGTCAGAAAGAAGTCCAAATACCCCATATTTAATGCCAACCAGC 300
************************************************************
consensus_3848#0 CCCATGTTAGGCTTGCTCTTGGGATGAAATTTGATGGGAAAAAAGAGTTTAAGGAGGCAG 357
consensus_3848#1 CCCATGTTAGGCTTGCTCTTGGGATGAAATTTGATGGGAAAAAAGAGTTTAAGGAGGCAG 360
************************************************************
consensus_3848#0 TGGTCCAGCTAGCCTTGCAGAACAAAAGATTCATAAGGTTCCCCAAAGATGAAGGTTACA 417
consensus_3848#1 TGGTCCAGCTAGCCTTGCAGAACAAAAGATTCATAAGGTTCCCCAAAGATGAAGGTTACA 420
************************************************************
consensus_3848#0 GGACAAGGGCAAAGTGTGACTGGGCAACCTGTCCATGGAGTTGTTTGCTATCAAGGAACA 477
consensus_3848#1 GGACAAGGGCAAAGTGTGACTGGGCAACCTGTCCATGGAGTTGTTTGCTATCAAGGAACA 480
************************************************************
consensus_3848#0 GCAGGACAAATAGCTGGCAAATAGCAAGTCTTGTTGATGAGCACAATTGTCCTCCAAGGA 537
consensus_3848#1 GCAGGACAAATAGCTGGCAAATAGCAAGTCTTGTTGATGAGCACAATTGTCCTCCAAGGA 540
************************************************************
consensus_3848#0 AGGATAACAACCTGGTCACATACAAGAGAATTGCTCAGAAATATGAGAAGACGATCATAG 597
consensus_3848#1 AGGATAACAACCTGGTCACATACAAGAGAATTGCTCACAAATATGAGAAGACGATCATAG 600
************************************* **********************
consensus_3848#0 ATAACCCAACTTGGAGTATTCAGAGCATGCAGTCAACTGTCTCTGAGCAAATGTTTGCAA 657
consensus_3848#1 ATAACCCAACTTGGAGTATTCAGAGCATGCAGTCAACTGTCTCTGAGCAAATGTTTGCAA 660
************************************************************
consensus_3848#0 ATGTCAGTGCATCTTAGTGCAAGAGAGCAAAAGCATATGTCCTGAAGAAGATATATGAGT 717
consensus_3848#1 ATGTCATTGC-------------------------------------------------- 670
****** ***
consensus_3848#0 CTAGAAGGGATGAATACTCCAGAATTTTTGATTATCAATTGGAATTGTTGAGGAGTAATC 777
consensus_3848#1 ------------------------------------------------------------
consensus_3848#0 CTGGGAGTATAGTTGTTGTCAAGC 801
consensus_3848#1 ------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||