cluster # 3854

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Oryza sativa
cluster # 3854 cluster # 3854 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3854#0 length = 351 sequences # 1

consensus_3854#1 length = 341 sequences # 1

consensusID : consensus_3854#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 351
fasta sequence

                              [TATCTGAGTTGGAACGGAGACGACTGGCCAACATTGCCAGAAACAATGAGTATTTACAAGAATTGGGACTCAGTGCAAANTCAGCTCGNCAGACAAANCGTCCACCTACCGGTAANGTTATCCAGNCCATGCGTATACAAAATNGGANGGTGGNGGACGNGATAGGCNNTCGNCGCTCTTCGAGAATCGCTAGCCTANCCGCCACGNTAAACTACANCGNNGAAATCCTCAGTCGNACACGTCCCAGNCACTCTGGAGGCATNGGGCCATCGCTTACTCATGTCGNCACGGATGTTGTGTCTGACTTNACGGTCGGTGTCTTCGTTGGTTTGAATCCGGGTAGTAAAGGTG]

[+] EMBL OSR3232A             [TATCTGAGTTGGAACGGAGACGACTGGCCAACATTGCCAGAAACAATGAGTATTTACAAGAATTGGGACTCAGTGCAAANTCAGCTCGNCAGACAAANCGTCCACCTACCGGTAANGTTATCCAGNCCATGCGTATACAAAATNGGANGGTGGNGGACGNGATAGGCNNTCGNCGCTCTTCGAGAATCGCTAGCCTANCCGCCACGNTAAACTACANCGNNGAAATCCTCAGTCGNACACGTCCCAGNCACTCTGGAGGCATNGGGCCATCGCTTACTCATGTCGNCACGGATGTTGTGTCTGACTTNACGGTCGGTGTCTTCGTTGGTTTGAATCCGGGTAGTAAAGGTG]




>consensus_3854#0
TATCTGAGTTGGAACGGAGACGACTGGCCAACATTGCCAGAAACAATGAGTATTTACAAG
AATTGGGACTCAGTGCAAANTCAGCTCGNCAGACAAANCGTCCACCTACCGGTAANGTTA
TCCAGNCCATGCGTATACAAAATNGGANGGTGGNGGACGNGATAGGCNNTCGNCGCTCTT
CGAGAATCGCTAGCCTANCCGCCACGNTAAACTACANCGNNGAAATCCTCAGTCGNACAC
GTCCCAGNCACTCTGGAGGCATNGGGCCATCGCTTACTCATGTCGNCACGGATGTTGTGT
CTGACTTNACGGTCGGTGTCTTCGTTGGTTTGAATCCGGGTAGTAAAGGTG

consensusID : consensus_3854#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 341
fasta sequence

                              [TTATCTGAGTTGGAACGGAGACGACTGGCCAACATTGCCAGAAACAATGAGTATTTACAAGAATTGGGACTCAGTGCAAAATCAGCTCGACAGACAAAACGTCCACCTACCGGTAAAGTTATCCAGACCATGCGTATACAAAATTGGAAGGTGGAGGACGAGATAGGCGCTCGACGCTCTTCGAGAATCGCTAGCCTACCCGCCACGGTAAACTACACCGAAGAAATCCTCAGTCGAACACGTCCCAGACACTCTGGAGGCATGGGGCCATCGCTTACTCATGTCGACACGGATGTNGTGTCTGACTTGACGGTCCGGTGTCTTCGTTGGGTTNAATCCCG]

[+] EMBL OSR3241A             [TTATCTGAGTTGGAACGGAGACGACTGGCCAACATTGCCAGAAACAATGAGTATTTACAAGAATTGGGACTCAGTGCAAAATCAGCTCGACAGACAAAACGTCCACCTACCGGTAAAGTTATCCAGACCATGCGTATACAAAATTGGAAGGTGGAGGACGAGATAGGCGCTCGACGCTCTTCGAGAATCGCTAGCCTACCCGCCACGGTAAACTACACCGAAGAAATCCTCAGTCGAACACGTCCCAGACACTCTGGAGGCATGGGGCCATCGCTTACTCATGTCGACACGGATGTNGTGTCTGACTTGACGGTCCGGTGTCTTCGTTGGGTTNAATCCCG]




>consensus_3854#1
TTATCTGAGTTGGAACGGAGACGACTGGCCAACATTGCCAGAAACAATGAGTATTTACAA
GAATTGGGACTCAGTGCAAAATCAGCTCGACAGACAAAACGTCCACCTACCGGTAAAGTT
ATCCAGACCATGCGTATACAAAATTGGAAGGTGGAGGACGAGATAGGCGCTCGACGCTCT
TCGAGAATCGCTAGCCTACCCGCCACGGTAAACTACACCGAAGAAATCCTCAGTCGAACA
CGTCCCAGACACTCTGGAGGCATGGGGCCATCGCTTACTCATGTCGACACGGATGTNGTG
TCTGACTTGACGGTCCGGTGTCTTCGTTGGGTTNAATCCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3854#0      -TATCTGAGTTGGAACGGAGACGACTGGCCAACATTGCCAGAAACAATGAGTATTTACAA 59
consensus_3854#1      TTATCTGAGTTGGAACGGAGACGACTGGCCAACATTGCCAGAAACAATGAGTATTTACAA 60
                       ***********************************************************

consensus_3854#0      GAATTGGGACTCAGTGCAAANTCAGCTCGNCAGACAAANCGTCCACCTACCGGTAANGTT 119
consensus_3854#1      GAATTGGGACTCAGTGCAAAATCAGCTCGACAGACAAAACGTCCACCTACCGGTAAAGTT 120
                      ******************** ******** ******** ***************** ***

consensus_3854#0      ATCCAGNCCATGCGTATACAAAATNGGANGGTGGNGGACGNGATAGGCNNTCGNCGCTCT 179
consensus_3854#1      ATCCAGACCATGCGTATACAAAATTGGAAGGTGGAGGACGAGATAGGCGCTCGACGCTCT 180
                      ****** ***************** *** ***** ***** *******  *** ******

consensus_3854#0      TCGAGAATCGCTAGCCTANCCGCCACGNTAAACTACANCGNNGAAATCCTCAGTCGNACA 239
consensus_3854#1      TCGAGAATCGCTAGCCTACCCGCCACGGTAAACTACACCGAAGAAATCCTCAGTCGAACA 240
                      ****************** ******** ********* **  ************** ***

consensus_3854#0      CGTCCCAGNCACTCTGGAGGCATNGGGCCATCGCTTACTCATGTCGNCACGGATGTTGTG 299
consensus_3854#1      CGTCCCAGACACTCTGGAGGCATGGGGCCATCGCTTACTCATGTCGACACGGATGTNGTG 300
                      ******** ************** ********************** ********* ***

consensus_3854#0      TCTGACTTNACGGTC-GGTGTCTTCGTTGGTTTGAATCCGGGTAGTAAAGGTG 351
consensus_3854#1      TCTGACTTGACGGTCCGGTGTCTTCGTTGGGTTNAATCCCG------------ 341
                      ******** ****** ************** ** ***** *