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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3858#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1782 fasta sequence
[CGCGTCCTTCCCCGTCTCCGGCCACACCTCGCCGCCGGCCACCTCCGCCGCCGCCGCCTCATGCTACCCCTTCACACCGCGTCCGGAGCCGGCCTGCCACCGTCGTGTCCGCCGCCTCCGGTGTCACCGACGGCTACCACTCCACCATCCGCTCCCTCAACTCCCGCGGCCGCCACGTCCCCCGCAAATCCCTCGGCCAGAACTACATGCTGAACTCGAAGGTGAACGAGGAGCTGGTGGCGGCGGCGGGGGTGGAGGAGGGGGACGTCGTGCTCGAGATCGGCCCGGGGACTGGGTCTCTTACGGCCGCTCTCCTCGATGCCGGCGCCACCGTCTTCGCCGTAGAGAAGGTCGGCGGCATTGCTAGTCATTGGCTTGAATTGGGCTAAGAGCTGCTGAGACCGTGTCATTGTTCCTTTTCACTAGTTTATTTGGTCCATAATCTGCAATGCCATATATCATGTTTGCTTTGGTAACAGGATAAGCATATGGCCACCCTTGTGAATGATAGGTTTGGATCCACAGAACAATTGAAGGTAGTTTCATGTTCTTAGACCAACACGTTGGATTGTTTCATCCATTTCTTTGACTATTGGTGTTTCTAGAATTGGTTACATGGTAATCCATGATGTTGCTTATTTGTTCCTCAGAATAACCACCCTTAGTTTATAACTCTGATTTTTTTCCCCAAGTCCAAGTGCAGGACCACTCTTATGCTGTGCTGAGATAAAAATAATGCTACTTATCTACACATGCTGCATTATGGAAAAGCTCTGAAGTGTGAATTCTTCTAGTTTCAATATTTCCCTGTCCAGCATTTGTTGTACACAGTTTCCTTCTGCTATAGCATAATGCTCTTATGACCAAATTGCACGCTAGCTTAACCTGCTTTACATTCTAATAACCAAATCAGGCATGTCCCATACATGGTAATAAGATTCACATATTATGGCTTCTCGTGACTTATGGACAAAATAAACTTAAAACGGGTTTTACTACATAGTCTAGTTGGGTCTCAGGACTTGAGCATATGAACAAGTATACGTTGTAACAGATGGTTGTAGTAAGATCTAAGCTCTTAAGATTCTAATAGCACTTTGCTCTTGTCATGGTCAGTAAGCATTTTTTTTTATGTTTCCGTGTTTCTATAGTTGCTCTTCTTGACATCCAATATGACCAATACTGCCATTTAAACTATCCACTCTTCTTCCAGTCATTGAAGATTGATATGTGGATAATCCTATTGCATATTTTATGAAACTAGAAATGCGAATGTGATATGGACAATATGCTGTTGCCTTTACCAAAATCTAGTCTTCATCTGATGTGTAATGATTTTAAGAATATAATGCAGATCATTGAAGAAGATATCACAAAATTTAATGTCCGCTCCCATTTTCTTCCTTTCCTGGAGGAAAAATCCCATCACACGAGAAAATATGCCAAGGTGGTGTCAAATTTACCATTCAATGTAAGTACTGAAGTTGTCAAACTTCTTCTCCCAATGGGAGATGTCTTTTCTGTCATGGTGCTTTTGCTTCAGGATGAAACGGCATTGCGCTTTGCAGATGCTTCAATACAAACACCAGAGTACCGACCTATCAATGTGTTTGTGAATTTCTACTCAGAACCAGAATACAAGTTCAAAGTTGAGAGGACAAATTTTTTCCCTCAACCGAAGGTTGATGGTGCTGTTATAAGCTTTAAGCTAAAGAATTCAGGGGATTATCCACCAGTTGGTTCTCACAAAGGTTTCTTTTCAATGGTGAACTCTGCTTTCAG]
[+] EMBL AK073966 [CGCGTCCTTCCCCGTCTCCGGCCACACCTCGCCGCCGGCCACCTCCGCCGCCGCCGCCTCATGCTACCCCTTCACACCGCGTCCGGAGCCGGCCTGCCACCGTCGTGTCCGCCGCCTCCGGTGTCACCGACGGCTACCACTCCACCATCCGCTCCCTCAACTCCCGCGGCCGCCACGTCCCCCGCAAATCCCTCGGCCAGAACTACATGCTGAACTCGAAGGTGAACGAGGAGCTGGTGGCGGCGGCGGGGGTGGAGGAGGGGGACGTCGTGCTCGAGATCGGCCCGGGGACTGGGTCTCTTACGGCCGCTCTCCTCGATGCCGGCGCCACCGTCTTCGCCGTAGAGAAGGTCGGCGGCATTGCTAGTCATTGGCTTGAATTGGGCTAAGAGCTGCTGAGACCGTGTCATTGTTCCTTTTCACTAGTTTATTTGGTCCATAATCTGCAATGCCATATATCATGTTTGCTTTGGTAACAGGATAAGCATATGGCCACCCTTGTGAATGATAGGTTTGGATCCACAGAACAATTGAAGGTAGTTTCATGTTCTTAGACCAACACGTTGGATTGTTTCATCCATTTCTTTGACTATTGGTGTTTCTAGAATTGGTTACATGGTAATCCATGATGTTGCTTATTTGTTCCTCAGAATAACCACCCTTAGTTTATAACTCTGATTTTTTTCCCCAAGTCCAAGTGCAGGACCACTCTTATGCTGTGCTGAGATAAAAATAATGCTACTTATCTACACATGCTGCATTATGGAAAAGCTCTGAAGTGTGAATTCTTCTAGTTTCAATATTTCCCTGTCCAGCATTTGTTGTACACAGTTTCCTTCTGCTATAGCATAATGCTCTTATGACCAAATTGCACGCTAGCTTAACCTGCTTTACATTCTAATAACCAAATCAGGCATGTCCCATACATGGTAATAAGATTCACATATTATGGCTTCTCGTGACTTATGGACAAAATAAACTTAAAACGGGTTTTACTACATAGTCTAGTTGGGTCTCAGGACTTGAGCATATGAACAAGTATACGTTGTAACAGATGGTTGTAGTAAGATCTAAGCTCTTAAGATTCTAATAGCACTTTGCTCTTGTCATGGTCAGTAAGCATTTTTTTTTATGTTTCCGTGTTTCTATAGTTGCTCTTCTTGACATCCAATATGACCAATACTGCCATTTAAACTATCCACTCTTCTTCCAGTCATTGAAGATTGATATGTGGATAATCCTATTGCATATTTTATGAAACTAGAAATGCGAATGTGATATGGACAATATGCTGTTGCCTTTACCAAAATCTAGTCTTCATCTGATGTGTAATGATTTTAAGAATATAATGCAGATCATTGAAGAAGATATCACAAAATTTAATGTCCGCTCCCATTTTCTTCCTTTCCTGGAGGAAAAATCCCATCACACGAGAAAATATGCCAAGGTGGTGTCAAATTTACCATTCAATGTAAGTACTGAAGTTGTCAAACTTCTTCTCCCAATGGGAGATGTCTTTTCTGTCATGGTGCTTTTGCTTCAGGATGAAACGGCATTGCGCTTTGCAGATGCTTCAATACAAACACCAGAGTACCGACCTATCAATGTGTTTGTGAATTTCTACTCAGAACCAGAATACAAGTTCAAAGTTGAGAGGACAAATTTTTTCCCTCAACCGAAGGTTGATGGTGCTGTTATAAGCTTTAAGCTAAAGAATTCAGGGGATTATCCACCAGTTGGTTCTCACAAAGGTTTCTTTTCAATGGTGAACTCTGCTTTCAG]
consensusID : consensus_3858#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 828 fasta sequence
[CCCCACCCGCACCGCGTCCTTCCCCGTCTCCGGCCACACCTCGCCGCCGGCCACCTCCGCCGCCGCCGCCTCATGCTACCCCTTCACACCGCGTCCGGAGCCGGCCTGCCACCGTCGTGTCCGCCGCCTCCGGTGTCACCGACGGCTACCACTCCACCATCCGCTCCCTCAACTCCCGCGGCCGCCACGTCCCCCGCAAATCCCTCGGCCAGAACTACATGCTGAACTCGAAGGTGAACGAGGAGCTGGTGGCGGCGGCGGGGGTGGAGGAGGGGGACGTCGTGCTCGAGATCGGCCCGGGGACTGGGTCTCTTACGGCCGCTCTCCTCGATGCCGGCGCCACCGTCTTCGCCGTAGAGAAGGATAAGCATATGGCCACCCTTGTGAATGATAGGTTTGGATCCACAGAACAATTGAAGGTAGTTTCATGTTCTTAGACCAACACGTTGGATTGTTTCATCCATTTCTTTGACTATTGGTGTTTCTAGAATTGGTTACATGGTAATCCATGATGTTGCTTATTTGTTCCTCAGAATAACCACCCTTAGTTTATAACTCTGATTTTTTTCCCCAAGTCCAAGTGCAGGACCATTCTTATGCTGTGCTGAGATAAAAATAATGCTACTTATCTACACATGCTGCATTATGGAAAAGCTCTGAAGTGTGAATTCTTCTAGTTTCAATATTTCCCTGTCCAGCATTTGTTGTACACAGTTTCCTTCTGCTATAGCATAATGCTCTTATGACCAAATTGCACGCTAGCTTAACCTGCTTTACATTCTAATAAACAAATCAGGCATGTCCCATACATGGTAATAAGATTCACAT]
[+] EMBL CB634878 [CCCCACCCGCACCGCGTCCTTCCCCGTCTCCGGCCACACCTCGCCGCCGGCCACCTCCGCCGCCGCCGCCTCATGCTACCCCTTCACACCGCGTCCGGAGCCGGCCTGCCACCGTCGTGTCCGCCGCCTCCGGTGTCACCGACGGCTACCACTCCACCATCCGCTCCCTCAACTCCCGCGGCCGCCACGTCCCCCGCAAATCCCTCGGCCAGAACTACATGCTGAACTCGAAGGTGAACGAGGAGCTGGTGGCGGCGGCGGGGGTGGAGGAGGGGGACGTCGTGCTCGAGATCGGCCCGGGGACTGGGTCTCTTACGGCCGCTCTCCTCGATGCCGGCGCCACCGTCTTCGCCGTAGAGAAGGATAAGCATATGGCCACCCTTGTGAATGATAGGTTTGGATCCACAGAACAATTGAAGGTAGTTTCATGTTCTTAGACCAACACGTTGGATTGTTTCATCCATTTCTTTGACTATTGGTGTTTCTAGAATTGGTTACATGGTAATCCATGATGTTGCTTATTTGTTCCTCAGAATAACCACCCTTAGTTTATAACTCTGATTTTTTTCCCCAAGTCCAAGTGCAGGACCATTCTTATGCTGTGCTGAGATAAAAATAATGCTACTTATCTACACATGCTGCATTATGGAAAAGCTCTGAAGTGTGAATTCTTCTAGTTTCAATATTTCCCTGTCCAGCATTTGTTGTACACAGTTTCCTTCTGCTATAGCATAATGCTCTTATGACCAAATTGCACGCTAGCTTAACCTGCTTTACATTCTAATAAACAAATCAGGCATGTCCCATACATGGTAATAAGATTCACAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3858#0 ------------CGCGTCCTTCCCCGTCTCCGGCCACACCTCGCCGCCGGCCACCTCCGC 48
consensus_3858#1 CCCCACCCGCACCGCGTCCTTCCCCGTCTCCGGCCACACCTCGCCGCCGGCCACCTCCGC 60
************************************************
consensus_3858#0 CGCCGCCGCCTCATGCTACCCCTTCACACCGCGTCCGGAGCCGGCCTGCCACCGTCGTGT 108
consensus_3858#1 CGCCGCCGCCTCATGCTACCCCTTCACACCGCGTCCGGAGCCGGCCTGCCACCGTCGTGT 120
************************************************************
consensus_3858#0 CCGCCGCCTCCGGTGTCACCGACGGCTACCACTCCACCATCCGCTCCCTCAACTCCCGCG 168
consensus_3858#1 CCGCCGCCTCCGGTGTCACCGACGGCTACCACTCCACCATCCGCTCCCTCAACTCCCGCG 180
************************************************************
consensus_3858#0 GCCGCCACGTCCCCCGCAAATCCCTCGGCCAGAACTACATGCTGAACTCGAAGGTGAACG 228
consensus_3858#1 GCCGCCACGTCCCCCGCAAATCCCTCGGCCAGAACTACATGCTGAACTCGAAGGTGAACG 240
************************************************************
consensus_3858#0 AGGAGCTGGTGGCGGCGGCGGGGGTGGAGGAGGGGGACGTCGTGCTCGAGATCGGCCCGG 288
consensus_3858#1 AGGAGCTGGTGGCGGCGGCGGGGGTGGAGGAGGGGGACGTCGTGCTCGAGATCGGCCCGG 300
************************************************************
consensus_3858#0 GGACTGGGTCTCTTACGGCCGCTCTCCTCGATGCCGGCGCCACCGTCTTCGCCGTAGAGA 348
consensus_3858#1 GGACTGGGTCTCTTACGGCCGCTCTCCTCGATGCCGGCGCCACCGTCTTCGCCGTAGAGA 360
************************************************************
consensus_3858#0 AGGTCGGCGGCATTGCTAGTCATTGGCTTGAATTGGGCTAAGAGCTGCTGAGACCGTGTC 408
consensus_3858#1 AGG--------------------------------------------------------- 363
***
consensus_3858#0 ATTGTTCCTTTTCACTAGTTTATTTGGTCCATAATCTGCAATGCCATATATCATGTTTGC 468
consensus_3858#1 ------------------------------------------------------------
consensus_3858#0 TTTGGTAACAGGATAAGCATATGGCCACCCTTGTGAATGATAGGTTTGGATCCACAGAAC 528
consensus_3858#1 ------------ATAAGCATATGGCCACCCTTGTGAATGATAGGTTTGGATCCACAGAAC 411
************************************************
consensus_3858#0 AATTGAAGGTAGTTTCATGTTCTTAGACCAACACGTTGGATTGTTTCATCCATTTCTTTG 588
consensus_3858#1 AATTGAAGGTAGTTTCATGTTCTTAGACCAACACGTTGGATTGTTTCATCCATTTCTTTG 471
************************************************************
consensus_3858#0 ACTATTGGTGTTTCTAGAATTGGTTACATGGTAATCCATGATGTTGCTTATTTGTTCCTC 648
consensus_3858#1 ACTATTGGTGTTTCTAGAATTGGTTACATGGTAATCCATGATGTTGCTTATTTGTTCCTC 531
************************************************************
consensus_3858#0 AGAATAACCACCCTTAGTTTATAACTCTGATTTTTTTCCCCAAGTCCAAGTGCAGGACCA 708
consensus_3858#1 AGAATAACCACCCTTAGTTTATAACTCTGATTTTTTTCCCCAAGTCCAAGTGCAGGACCA 591
************************************************************
consensus_3858#0 CTCTTATGCTGTGCTGAGATAAAAATAATGCTACTTATCTACACATGCTGCATTATGGAA 768
consensus_3858#1 TTCTTATGCTGTGCTGAGATAAAAATAATGCTACTTATCTACACATGCTGCATTATGGAA 651
***********************************************************
consensus_3858#0 AAGCTCTGAAGTGTGAATTCTTCTAGTTTCAATATTTCCCTGTCCAGCATTTGTTGTACA 828
consensus_3858#1 AAGCTCTGAAGTGTGAATTCTTCTAGTTTCAATATTTCCCTGTCCAGCATTTGTTGTACA 711
************************************************************
consensus_3858#0 CAGTTTCCTTCTGCTATAGCATAATGCTCTTATGACCAAATTGCACGCTAGCTTAACCTG 888
consensus_3858#1 CAGTTTCCTTCTGCTATAGCATAATGCTCTTATGACCAAATTGCACGCTAGCTTAACCTG 771
************************************************************
consensus_3858#0 CTTTACATTCTAATAACCAAATCAGGCATGTCCCATACATGGTAATAAGATTCACATATT 948
consensus_3858#1 CTTTACATTCTAATAAACAAATCAGGCATGTCCCATACATGGTAATAAGATTCACAT--- 828
**************** ****************************************
consensus_3858#0 ATGGCTTCTCGTGACTTATGGACAAAATAAACTTAAAACGGGTTTTACTACATAGTCTAG 1008
consensus_3858#1 ------------------------------------------------------------
consensus_3858#0 TTGGGTCTCAGGACTTGAGCATATGAACAAGTATACGTTGTAACAGATGGTTGTAGTAAG 1068
consensus_3858#1 ------------------------------------------------------------
consensus_3858#0 ATCTAAGCTCTTAAGATTCTAATAGCACTTTGCTCTTGTCATGGTCAGTAAGCATTTTTT 1128
consensus_3858#1 ------------------------------------------------------------
consensus_3858#0 TTTATGTTTCCGTGTTTCTATAGTTGCTCTTCTTGACATCCAATATGACCAATACTGCCA 1188
consensus_3858#1 ------------------------------------------------------------
consensus_3858#0 TTTAAACTATCCACTCTTCTTCCAGTCATTGAAGATTGATATGTGGATAATCCTATTGCA 1248
consensus_3858#1 ------------------------------------------------------------
consensus_3858#0 TATTTTATGAAACTAGAAATGCGAATGTGATATGGACAATATGCTGTTGCCTTTACCAAA 1308
consensus_3858#1 ------------------------------------------------------------
consensus_3858#0 ATCTAGTCTTCATCTGATGTGTAATGATTTTAAGAATATAATGCAGATCATTGAAGAAGA 1368
consensus_3858#1 ------------------------------------------------------------
consensus_3858#0 TATCACAAAATTTAATGTCCGCTCCCATTTTCTTCCTTTCCTGGAGGAAAAATCCCATCA 1428
consensus_3858#1 ------------------------------------------------------------
consensus_3858#0 CACGAGAAAATATGCCAAGGTGGTGTCAAATTTACCATTCAATGTAAGTACTGAAGTTGT 1488
consensus_3858#1 ------------------------------------------------------------
consensus_3858#0 CAAACTTCTTCTCCCAATGGGAGATGTCTTTTCTGTCATGGTGCTTTTGCTTCAGGATGA 1548
consensus_3858#1 ------------------------------------------------------------
consensus_3858#0 AACGGCATTGCGCTTTGCAGATGCTTCAATACAAACACCAGAGTACCGACCTATCAATGT 1608
consensus_3858#1 ------------------------------------------------------------
consensus_3858#0 GTTTGTGAATTTCTACTCAGAACCAGAATACAAGTTCAAAGTTGAGAGGACAAATTTTTT 1668
consensus_3858#1 ------------------------------------------------------------
consensus_3858#0 CCCTCAACCGAAGGTTGATGGTGCTGTTATAAGCTTTAAGCTAAAGAATTCAGGGGATTA 1728
consensus_3858#1 ------------------------------------------------------------
consensus_3858#0 TCCACCAGTTGGTTCTCACAAAGGTTTCTTTTCAATGGTGAACTCTGCTTTCAG 1782
consensus_3858#1 ------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||