cluster # 3867

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3867 cluster # 3867 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3867#0 length = 1175 sequences # 1

consensus_3867#1 length = 215 sequences # 1

consensusID : consensus_3867#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1175
fasta sequence

                              [AGGAACCAACGATTCTCTCTTCTTAAACAACCTATATACTCCACACTTAACCAGCATTTGATAGATTATCCAACTCCGAGCAATCTTAGTTATTGGTGGGGGTTCGGTTCGTTAGCAGGTATTTGTTTAGTCATTCAGATAGTGACTGGCGTTTTTTTAGCTATGCATTACACACCTCATGTGGATCTAGCTTTCAACAGCGTAGAACACATTATGAGAGATGTTGAAGGGGGCTGGTTGCTCCGTTATATGCATGCTAATGGGGCAAGTATGTTTTTCATTGTGGTTTACCTTCATATTTTTCGTGGTCTATATTATGCGAGTTATAGCAGTCCTAGGGAATTTGTTTGGTGTCTCGGAGTTGTCATATTCCTATTAATGATTGTGACAGCTTTTATAGGATACGTACTACCTTGGGGTCAGATGAGCTTTTGGGGAGCAACAGTAATTACAAGCTTAGCTAGCGCCATACCAGTAGTAGGAGATACCATAGTGACTTGGCTTTGGGGTGGTTTCTCCGTGGACAATGCCACCTTAAATCGTTTTTTTAGTCTTCATTATTTACTCCCCTTTATTTTAGTAGGCGCCAGTCTTCTTCATCTGGCTGCATTGCATCAATATGGATCAAATAATCCATTGGGTGTACATTCTGAGATGGATAAAATAGCTTTTTACCCTTATTTTTATGTAAAGGATCTTGTAGGTTGGGTAGCTTTTGCTATCTTTTTTTCCATTTGGATTTTTTTTGCTCCTAATGTTTTGGGGCATCCCGACAATTATATACCTGCTAATCCGATGTCCACCCCGCCTCATATTGTGCCGGAATGGTATTTCCTACCGATCTATGCCATTCTTCGCAGTATACCTGACAAAGCGGGAGGTGTAGCCGCAATAGCACTAGTTTTTATATCTCTCTTGGCTTTACCTTTTTTTAAAGAAATGTATGTGCGTAGTTCAAGTTTTCGACCGATTTACCAAGGAATATTTTGGTTGCTTTTGGCGGATTGCTTACTACTAGGTTGGATCGGATGTCAACCTGTGGAGGCACCATTTGTTACTATTGGACAAATTTCTTCTTTCTTTTTCTTTTTGTTCTTTGCCATAACGCCTATTCTGGGACGAGTTGGAAGAGGAATTCCAAAATATTACACGGATGAGACTCATCGCACCGGATC]

[+] EMBL MIOS83009            [AGGAACCAACGATTCTCTCTTCTTAAACAACCTATATACTCCACACTTAACCAGCATTTGATAGATTATCCAACTCCGAGCAATCTTAGTTATTGGTGGGGGTTCGGTTCGTTAGCAGGTATTTGTTTAGTCATTCAGATAGTGACTGGCGTTTTTTTAGCTATGCATTACACACCTCATGTGGATCTAGCTTTCAACAGCGTAGAACACATTATGAGAGATGTTGAAGGGGGCTGGTTGCTCCGTTATATGCATGCTAATGGGGCAAGTATGTTTTTCATTGTGGTTTACCTTCATATTTTTCGTGGTCTATATTATGCGAGTTATAGCAGTCCTAGGGAATTTGTTTGGTGTCTCGGAGTTGTCATATTCCTATTAATGATTGTGACAGCTTTTATAGGATACGTACTACCTTGGGGTCAGATGAGCTTTTGGGGAGCAACAGTAATTACAAGCTTAGCTAGCGCCATACCAGTAGTAGGAGATACCATAGTGACTTGGCTTTGGGGTGGTTTCTCCGTGGACAATGCCACCTTAAATCGTTTTTTTAGTCTTCATTATTTACTCCCCTTTATTTTAGTAGGCGCCAGTCTTCTTCATCTGGCTGCATTGCATCAATATGGATCAAATAATCCATTGGGTGTACATTCTGAGATGGATAAAATAGCTTTTTACCCTTATTTTTATGTAAAGGATCTTGTAGGTTGGGTAGCTTTTGCTATCTTTTTTTCCATTTGGATTTTTTTTGCTCCTAATGTTTTGGGGCATCCCGACAATTATATACCTGCTAATCCGATGTCCACCCCGCCTCATATTGTGCCGGAATGGTATTTCCTACCGATCTATGCCATTCTTCGCAGTATACCTGACAAAGCGGGAGGTGTAGCCGCAATAGCACTAGTTTTTATATCTCTCTTGGCTTTACCTTTTTTTAAAGAAATGTATGTGCGTAGTTCAAGTTTTCGACCGATTTACCAAGGAATATTTTGGTTGCTTTTGGCGGATTGCTTACTACTAGGTTGGATCGGATGTCAACCTGTGGAGGCACCATTTGTTACTATTGGACAAATTTCTTCTTTCTTTTTCTTTTTGTTCTTTGCCATAACGCCTATTCTGGGACGAGTTGGAAGAGGAATTCCAAAATATTACACGGATGAGACTCATCGCACCGGATC]




>consensus_3867#0
AGGAACCAACGATTCTCTCTTCTTAAACAACCTATATACTCCACACTTAACCAGCATTTG
ATAGATTATCCAACTCCGAGCAATCTTAGTTATTGGTGGGGGTTCGGTTCGTTAGCAGGT
ATTTGTTTAGTCATTCAGATAGTGACTGGCGTTTTTTTAGCTATGCATTACACACCTCAT
GTGGATCTAGCTTTCAACAGCGTAGAACACATTATGAGAGATGTTGAAGGGGGCTGGTTG
CTCCGTTATATGCATGCTAATGGGGCAAGTATGTTTTTCATTGTGGTTTACCTTCATATT
TTTCGTGGTCTATATTATGCGAGTTATAGCAGTCCTAGGGAATTTGTTTGGTGTCTCGGA
GTTGTCATATTCCTATTAATGATTGTGACAGCTTTTATAGGATACGTACTACCTTGGGGT
CAGATGAGCTTTTGGGGAGCAACAGTAATTACAAGCTTAGCTAGCGCCATACCAGTAGTA
GGAGATACCATAGTGACTTGGCTTTGGGGTGGTTTCTCCGTGGACAATGCCACCTTAAAT
CGTTTTTTTAGTCTTCATTATTTACTCCCCTTTATTTTAGTAGGCGCCAGTCTTCTTCAT
CTGGCTGCATTGCATCAATATGGATCAAATAATCCATTGGGTGTACATTCTGAGATGGAT
AAAATAGCTTTTTACCCTTATTTTTATGTAAAGGATCTTGTAGGTTGGGTAGCTTTTGCT
ATCTTTTTTTCCATTTGGATTTTTTTTGCTCCTAATGTTTTGGGGCATCCCGACAATTAT
ATACCTGCTAATCCGATGTCCACCCCGCCTCATATTGTGCCGGAATGGTATTTCCTACCG
ATCTATGCCATTCTTCGCAGTATACCTGACAAAGCGGGAGGTGTAGCCGCAATAGCACTA
GTTTTTATATCTCTCTTGGCTTTACCTTTTTTTAAAGAAATGTATGTGCGTAGTTCAAGT
TTTCGACCGATTTACCAAGGAATATTTTGGTTGCTTTTGGCGGATTGCTTACTACTAGGT
TGGATCGGATGTCAACCTGTGGAGGCACCATTTGTTACTATTGGACAAATTTCTTCTTTC
TTTTTCTTTTTGTTCTTTGCCATAACGCCTATTCTGGGACGAGTTGGAAGAGGAATTCCA
AAATATTACACGGATGAGACTCATCGCACCGGATC

consensusID : consensus_3867#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 215
fasta sequence

                              [GAGTTATTTTACACAATGAATTTACAAGCAGAATTGATCACTGATCAGGTGTGATCAGTCTCATCCGTCTAAGAGACTGATCCGGTGCGATGAGTCTCATCCGTGTAATATTTTGGAATTCCTCTTCCAACTCGTCCCAGAATAGGCGTTATGGCAAAGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU183676             [GAGTTATTTTACACAATGAATTTACAAGCAGAATTGATCACTGATCAGGTGTGATCAGTCTCATCCGTCTAAGAGACTGATCCGGTGCGATGAGTCTCATCCGTGTAATATTTTGGAATTCCTCTTCCAACTCGTCCCAGAATAGGCGTTATGGCAAAGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_3867#1
GAGTTATTTTACACAATGAATTTACAAGCAGAATTGATCACTGATCAGGTGTGATCAGTC
TCATCCGTCTAAGAGACTGATCCGGTGCGATGAGTCTCATCCGTGTAATATTTTGGAATT
CCTCTTCCAACTCGTCCCAGAATAGGCGTTATGGCAAAGAACAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3867#0      AGGAACCAACGATTCTCTCTTCTTAAACAACCTATATACTCCACACTTAACCAGCATTTG 60
consensus_3867#1      ------------------------------------------------------------
                                                                                  

consensus_3867#0      ATAGATTATCCAACTCCGAGCAATCTTAGTTATTGGTGGGGGTTCGGTTCGTTAGCAGGT 120
consensus_3867#1      ------------------------------------------------------------
                                                                                  

consensus_3867#0      ATTTGTTTAGTCATTCAGATAGTGACTGGCGTTTTTTTAGCTATGCATTACACACCTCAT 180
consensus_3867#1      ------------------------------------------------------------
                                                                                  

consensus_3867#0      GTGGATCTAGCTTTCAACAGCGTAGAACACATTATGAGAGATGTTGAAGGGGGCTGGTTG 240
consensus_3867#1      ------------------------------------------------------------
                                                                                  

consensus_3867#0      CTCCGTTATATGCATGCTAATGGGGCAAGTATGTTTTTCATTGTGG-TTTACCTTCATAT 299
consensus_3867#1      --------------------------GAGT-TATTTTACACAATGAATTTACAAGCAGAA 33
                                                 *** * **** **   **  *****   ** * 

consensus_3867#0      TTT-TCGTGGTCTATATTATGCGAGTTATAGCAGTCCTAGGGAATTTGTTTGGTGTCTCG 358
consensus_3867#1      TTGATCACTGATCAGGTGTGATCAGTCTCATCCGTC-TAAGAGACTGATCCGGTGCGATG 92
                      **  **   *   *  *      ***   * * *** ** *  * *  *  ****    *

consensus_3867#0      GAGTTGTCATATTCCTATTAATGATTGTGACAGCTTTTATAGGATACGTACTACCTTGGG 418
consensus_3867#1      A----GTCTCATCCGTGT-AAT-ATTTTGGAATTCCTCTTCCAACTCGTCCCA------G 140
                           ***  ** * * * *** *** **  *    *  *   *  *** * *      *

consensus_3867#0      GTCAGATGAGCTTTTGGGGAGCAACAGTAATTACAAGCTTAGCTAGCGCCATACCAGTAG 478
consensus_3867#1      AATAGGCG---TTATGGCAAAGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 197
                         **  *   ** ***  *  ****  **  * **    *   *     * *  *  * 

consensus_3867#0      TAGGAGATACCATAGTGACTTGGCTTTGGGGTGGTTTCTCCGTGGACAATGCCACCTTAA 538
consensus_3867#1      AAAAAAAAAAAAAAAAAA------------------------------------------ 215
                       *  * * *  * *   *                                          

consensus_3867#0      ATCGTTTTTTTAGTCTTCATTATTTACTCCCCTTTATTTTAGTAGGCGCCAGTCTTCTTC 598
consensus_3867#1      ------------------------------------------------------------
                                                                                  

consensus_3867#0      ATCTGGCTGCATTGCATCAATATGGATCAAATAATCCATTGGGTGTACATTCTGAGATGG 658
consensus_3867#1      ------------------------------------------------------------
                                                                                  

consensus_3867#0      ATAAAATAGCTTTTTACCCTTATTTTTATGTAAAGGATCTTGTAGGTTGGGTAGCTTTTG 718
consensus_3867#1      ------------------------------------------------------------
                                                                                  

consensus_3867#0      CTATCTTTTTTTCCATTTGGATTTTTTTTGCTCCTAATGTTTTGGGGCATCCCGACAATT 778
consensus_3867#1      ------------------------------------------------------------
                                                                                  

consensus_3867#0      ATATACCTGCTAATCCGATGTCCACCCCGCCTCATATTGTGCCGGAATGGTATTTCCTAC 838
consensus_3867#1      ------------------------------------------------------------
                                                                                  

consensus_3867#0      CGATCTATGCCATTCTTCGCAGTATACCTGACAAAGCGGGAGGTGTAGCCGCAATAGCAC 898
consensus_3867#1      ------------------------------------------------------------
                                                                                  

consensus_3867#0      TAGTTTTTATATCTCTCTTGGCTTTACCTTTTTTTAAAGAAATGTATGTGCGTAGTTCAA 958
consensus_3867#1      ------------------------------------------------------------
                                                                                  

consensus_3867#0      GTTTTCGACCGATTTACCAAGGAATATTTTGGTTGCTTTTGGCGGATTGCTTACTACTAG 1018
consensus_3867#1      ------------------------------------------------------------
                                                                                  

consensus_3867#0      GTTGGATCGGATGTCAACCTGTGGAGGCACCATTTGTTACTATTGGACAAATTTCTTCTT 1078
consensus_3867#1      ------------------------------------------------------------
                                                                                  

consensus_3867#0      TCTTTTTCTTTTTGTTCTTTGCCATAACGCCTATTCTGGGACGAGTTGGAAGAGGAATTC 1138
consensus_3867#1      ------------------------------------------------------------
                                                                                  

consensus_3867#0      CAAAATATTACACGGATGAGACTCATCGCACCGGATC 1175
consensus_3867#1      -------------------------------------