These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_387#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence [CGAGACAAGGGGGATCACAGATTCACCAACCAGAAGACTACTCCCGTCGTCATCTGTGTGAGGCTAGCTAGCTCTAGCTCGATCGATCGACATGGCGAAAGCTAGGGTGAACCTGACCGTCCTCGGCCTGTCGTCTCTGGTGGCTCTCCTCGTCCTCATCATCGCCGTCGAGGATGTCGCCGTCGTCGCGCAGGTCATCGACTACTCGTCCATGAATCGCGACCATATCCCTGGAACACCGCAGCTCAACCACCCCGGCGACATCGCTAACAAATACACGCGTGGATGTGAGAAAGAGCAGGCGTGCAGGGATAGCAAGATGACATGATCGATCGATCGATTGATCACTGATGCTATAGCGATGCACGTTCGTTTGGAATTAAACTTCGTTTGGTGCTATATAGGGGAGCTTTTCGATAATATAAGTATTGTAACAGCAAATTCTTATGTGGGTTAGTAATGATTTCTCTCTCTCTATATATATAGTTGCAGCTTTGGCAAAATTTGCCATGATCTTTGCTAGAAAGCATTGTAAGAATGTGGATCTGTTGATGGATGTATACCACAAAATTATATATGGTGTTT] [+] EMBL CB096322 [CGAGACAAGGGGGATCACAGATTCACCAACCAGAAGACTACTCCCGTCGTCATCTGTGTGAGGCTAGCTAGCTCTAGCTCGATCGATCGACATGGCGAAAGCTAGGGTGAACCTGACCGTCCTCGGCCTGTCGTCTCTGGTGGCTCTCCTCGTCCTCATCATCGCCGTCGAGGATGTCGCCGTCGTCGCGCAGGTCATCGACTACTCGTCCATGAATCGCGACCATATCCCTGGAACACCGCAGCTCAACCACCCCGGCGACATCGCTAACAAATACACGCGTGGATGTGAGAAAGAGCAGGCGTGCAGGGATAGCAAGATGACATGATCGATCGATCGATTGATCACTGATGCTATAGCGATGCACGTTCGTTTGGAATTAAACTTCGTTTGGTGCTATATAGGGGAGCTTTTCGATAATATAAGTATTGTAACAGCAAATTCTTATGTGGGTTAGTAATGATTTCTCTCTCTCTATATATATAGTTGCAGCTTTGGCAAAATTTGCCATGATCTTTGCTAGAAAGCATTGTAAGAATGTGGATCTGTTGATGGATGTATACCACAAAATTATATATGGTGTTT] consensusID : consensus_387#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 582 fasta sequence [AGAGGACGAGACAAGGGGGACCCTATAAAATCAGTTATCCATAGCCAACAATTCATCACAGATTCACCAACCAGAAGACTACTCCCGTCGTTATCTGTGTGAGGCTAGCTAGCTCTAGCTCGATCGATTGTCATGGCGAAAGCTAGGGTGAACCTGACCGTCCTCGGCCCGTTGTCTTTGGTGGCTCTCCTCGTCCTCATTATTGCCGTCGAGGAAGTTGCCGTTGTCGCGCAGGTCATTGACTACTTGTCCATGAATCGCGACCATATCCCTGGAACACCGCAGCTCAACCACCCCGGGGACATCGCTAACAAATACACGCGTGGATGTGAGAAAAAGCAGGCGTGCAGGGATAGCAAGATGACATGATCGATCGATCGATTGATCACTGATGCTAAAGCGATGCACGTTCGTTTGGAATTAAACTTCGTTTGGTGCTATATAGGGGAGCTTTTCGATAATATAAGTATTGTAACAGCAAATTTTTATGTGGGTTAGTAATGATTTCTCTCTCTCTATATATATAGTTGCAGCTTTGGCAAAATTTGCCATGATCTTTGCTAGAAAAAAAAAAAAAAAAAA] [-] EMBL CA760228 [AGAGGACGAGACAAGGGGGACCCTATAAAATCAGTTATCCATAGCCAACAATTCATCACAGATTCACCAACCAGAAGACTACTCCCGTCGTTATCTGTGTGAGGCTAGCTAGCTCTAGCTCGATCGATTGTCATGGCGAAAGCTAGGGTGAACCTGACCGTCCTCGGCCCGTTGTCTTTGGTGGCTCTCCTCGTCCTCATTATTGCCGTCGAGGAAGTTGCCGTTGTCGCGCAGGTCATTGACTACTTGTCCATGAATCGCGACCATATCCCTGGAACACCGCAGCTCAACCACCCCGGGGACATCGCTAACAAATACACGCGTGGATGTGAGAAAAAGCAGGCGTGCAGGGATAGCAAGATGACATGATCGATCGATCGATTGATCACTGATGCTAAAGCGATGCACGTTCGTTTGGAATTAAACTTCGTTTGGTGCTATATAGGGGAGCTTTTCGATAATATAAGTATTGTAACAGCAAATTTTTATGTGGGTTAGTAATGATTTCTCTCTCTCTATATATATAGTTGCAGCTTTGGCAAAATTTGCCATGATCTTTGCTAGAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_387#0 ----------------------------------------CGAGACAAGGGGG-ATCACA 19 consensus_387#1 AGAGGACGAGACAAGGGGGACCCTATAAAATCAGTTATCCATAGCCAACAATTCATCACA 60 ** *** ****** consensus_387#0 GATTCACCAACCAGAAGACTACTCCCGTCGTCATCTGTGTGAGGCTAGCTAGCTCTAGCT 79 consensus_387#1 GATTCACCAACCAGAAGACTACTCCCGTCGTTATCTGTGTGAGGCTAGCTAGCTCTAGCT 120 ******************************* **************************** consensus_387#0 CGATCGATCGACATGGCGAAAGCTAGGGTGAACCTGACCGTCCTCGGCCTGTCGTCTCTG 139 consensus_387#1 CGATCGATTGTCATGGCGAAAGCTAGGGTGAACCTGACCGTCCTCGGCCCGTTGTCTTTG 180 ******** * ************************************** ** **** ** consensus_387#0 GTGGCTCTCCTCGTCCTCATCATCGCCGTCGAGGATGTCGCCGTCGTCGCGCAGGTCATC 199 consensus_387#1 GTGGCTCTCCTCGTCCTCATTATTGCCGTCGAGGAAGTTGCCGTTGTCGCGCAGGTCATT 240 ******************** ** *********** ** ***** ************** consensus_387#0 GACTACTCGTCCATGAATCGCGACCATATCCCTGGAACACCGCAGCTCAACCACCCCGGC 259 consensus_387#1 GACTACTTGTCCATGAATCGCGACCATATCCCTGGAACACCGCAGCTCAACCACCCCGGG 300 ******* *************************************************** consensus_387#0 GACATCGCTAACAAATACACGCGTGGATGTGAGAAAGAGCAGGCGTGCAGGGATAGCAAG 319 consensus_387#1 GACATCGCTAACAAATACACGCGTGGATGTGAGAAAAAGCAGGCGTGCAGGGATAGCAAG 360 ************************************ *********************** consensus_387#0 ATGACATGATCGATCGATCGATTGATCACTGATGCTATAGCGATGCACGTTCGTTTGGAA 379 consensus_387#1 ATGACATGATCGATCGATCGATTGATCACTGATGCTAAAGCGATGCACGTTCGTTTGGAA 420 ************************************* ********************** consensus_387#0 TTAAACTTCGTTTGGTGCTATATAGGGGAGCTTTTCGATAATATAAGTATTGTAACAGCA 439 consensus_387#1 TTAAACTTCGTTTGGTGCTATATAGGGGAGCTTTTCGATAATATAAGTATTGTAACAGCA 480 ************************************************************ consensus_387#0 AATTCTTATGTGGGTTAGTAATGATTTCTCTCTCTCTATATATATAGTTGCAGCTTTGGC 499 consensus_387#1 AATTTTTATGTGGGTTAGTAATGATTTCTCTCTCTCTATATATATAGTTGCAGCTTTGGC 540 **** ******************************************************* consensus_387#0 AAAATTTGCCATGATCTTTGCTAGAAAGCATTGTAAGAATGTGGATCTGTTGATGGATGT 559 consensus_387#1 AAAATTTGCCATGATCTTTGCTAGAAAAAAAAAAAAAAAAAA------------------ 582 *************************** * ** ** consensus_387#0 ATACCACAAAATTATATATGGTGTTT 585 consensus_387#1 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||