These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3877#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 825 fasta sequence [CTCACGCCGGCGCCGCGGCGTCTCGTCTCCTCCCACCGCAACCTTTCTTCTTTTGCTTAGCTTTCACTTACACTACCCCTCGCCGCGCCTCGCCGCGCGACGCGGCCCTTTCCCGCCACCAACCCCTCGCCGCGCCCGCCTCGCCTCCGGAGACCGCCGGAGGATGGAAACCTCGCCCGCGCTGCGCCCCGCCCACATCCCCAGATCCACGGCCGTCCGCCCGCCGTGCGCCACCCCTTTCTCCCGCGCCCACTGGCACGCCACCTGCGCCGCCATCCGCCGAGTCCCGCGGGTGAACGGCGACAGCAACAGTAGCATCAAGCCCGCCCTCGCCGACCACGCCGCGCCGCCGCTCGACCTGGATCTGCTCCCCGTCTCCAACCTCCCTCGCCCGCTCACCATCACCGACCTCTCCCCCGCGCCCATGCACGGCAGCCAGCTGCGCGTCGCCTACCAGGGTGTCCCGGGGGCATACAGCGAGGCGGCGGCGGCGAAGGCCTACCCCTCCTGCGACGCCATCCCCTGCGACCAGTTCGAGGTGGCCTTCCAGGCCGTCGAGCTCTGGATCGCCGACCGCGCCGTCCTCCCCGTCGAGAACTCCCTCGGCGGCAGCATCCACCGCAACTACGACCTCCTCCTCCGCCACCGCCTCCACATCGTCGGCGAGGTCCAGCTCCCCGTCCACCACTGCCTCCTCGCGCTCCCGGGCGTCCGCAGGGACCTCCTCACCCGCGTCATCTCCCACCCGCAGGCGCTCGCCCAGTGCGAGCTCACCCTCAACGCCATGGGCCTCAACGTCGCCCGCGAGGCCTTCGACGACACCGC] [+] EMBL AK066427 [CTCACGCCGGCGCCGCGGCGTCTCGTCTCCTCCCACCGCAACCTTTCTTCTTTTGCTTAGCTTTCACTTACACTACCCCTCGCCGCGCCTCGCCGCGCGACGCGGCCCTTTCCCGCCACCAACCCCTCGCCGCGCCCGCCTCGCCTCCGGAGACCGCCGGAGGATGGAAACCTCGCCCGCGCTGCGCCCCGCCCACATCCCCAGATCCACGGCCGTCCGCCCGCCGTGCGCCACCCCTTTCTCCCGCGCCCACTGGCACGCCACCTGCGCCGCCATCCGCCGAGTCCCGCGGGTGAACGGCGACAGCAACAGTAGCATCAAGCCCGCCCTCGCCGACCACGCCGCGCCGCCGCTCGACCTGGATCTGCTCCCCGTCTCCAACCTCCCTCGCCCGCTCACCATCACCGACCTCTCCCCCGCGCCCATGCACGGCAGCCAGCTGCGCGTCGCCTACCAGGGTGTCCCGGGGGCATACAGCGAGGCGGCGGCGGCGAAGGCCTACCCCTCCTGCGACGCCATCCCCTGCGACCAGTTCGAGGTGGCCTTCCAGGCCGTCGAGCTCTGGATCGCCGACCGCGCCGTCCTCCCCGTCGAGAACTCCCTCGGCGGCAGCATCCACCGCAACTACGACCTCCTCCTCCGCCACCGCCTCCACATCGTCGGCGAGGTCCAGCTCCCCGTCCACCACTGCCTCCTCGCGCTCCCGGGCGTCCGCAGGGACCTCCTCACCCGCGTCATCTCCCACCCGCAGGCGCTCGCCCAGTGCGAGCTCACCCTCAACGCCATGGGCCTCAACGTCGCCCGCGAGGCCTTCGACGACACCGC] consensusID : consensus_3877#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 245 fasta sequence [CCGGGCTAGTTCTAGATCGCGAGAGGCCGNCCTTTCCCGCCACCCACCCCTCGNCGTCGNCGTCCGCCGGATGATGGAAACTCTGCCCGCGCCGNGCCCCACCCAGATCCCCAGATCCACGGCCATCCGCCCGCCGTGCGCCACCCCCTTCTCCCGCGNCCACTGGCAGACCACCTGCGCCGNCATCCTCGNCACCACCACTACCACCAACGACAAAGCCTATGGCGTCCCGTGGGTGAACGGNG] [+] EMBL OSS10963A [CCGGGCTAGTTCTAGATCGCGAGAGGCCGNCCTTTCCCGCCACCCACCCCTCGNCGTCGNCGTCCGCCGGATGATGGAAACTCTGCCCGCGCCGNGCCCCACCCAGATCCCCAGATCCACGGCCATCCGCCCGCCGTGCGCCACCCCCTTCTCCCGCGNCCACTGGCAGACCACCTGCGCCGNCATCCTCGNCACCACCACTACCACCAACGACAAAGCCTATGGCGTCCCGTGGGTGAACGGNG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3877#0 CTCACGCCGGCGCCGCGGCGTCTCGTCTCCTCCCACCGCAACCTTTCTTCTTTTGCTTAG 60 consensus_3877#1 ------------------------------------------------------------ consensus_3877#0 CTTTCACTTACACTACCCCTCGCCGCGCCTCG-CCGCGCGACGCGGCCCTTTCCCGCCAC 119 consensus_3877#1 -----------------CCGGGCTAGTTCTAGATCGCGAGAGGCCGNCCTTTCCCGCCAC 43 ** ** ** * **** ** ** * ************* consensus_3877#0 CAACCCCTCGCCGCGCCCGCCTCGCCTCCGGAGACCGCCGGAGGATGGAAACCTCGCCCG 179 consensus_3877#1 CCACCCCTCGNCGT--------------CGNCGTCCGCCGGATGATGGAAACTCTGCCCG 89 * ******** ** ** * ******** ********* ***** consensus_3877#0 CGCTGCGCCCCGCCCACATCCCCAGATCCACGGCCGTCCGCCCGCCGTGCGCCACCCCTT 239 consensus_3877#1 CGCCGNGCCCCACCCAGATCCCCAGATCCACGGCCATCCGCCCGCCGTGCGCCACCCCCT 149 *** * ***** **** ****************** ********************** * consensus_3877#0 TCTCCCGCGCCCACTGGCACGCCACCTGCGCCGCCATCCGCCGAGTCCCGCGGGTGAACG 299 consensus_3877#1 TCTCCCGCGNCCACTGGCAGACCACCTGCGCCGNCATCCTCGNCACCACCACTACCACCA 209 ********* ********* ************ ***** * * * * * consensus_3877#0 GCGACAGCAACAGTAGCATCAAGCCCGCCCTCGCCGACCACGCCGCGCCGCCGCTCGACC 359 consensus_3877#1 ACGACAAAGCCTATGGCGTCCCGTGGGTGAACGGNG------------------------ 245 ***** * * ** ** * * ** * consensus_3877#0 TGGATCTGCTCCCCGTCTCCAACCTCCCTCGCCCGCTCACCATCACCGACCTCTCCCCCG 419 consensus_3877#1 ------------------------------------------------------------ consensus_3877#0 CGCCCATGCACGGCAGCCAGCTGCGCGTCGCCTACCAGGGTGTCCCGGGGGCATACAGCG 479 consensus_3877#1 ------------------------------------------------------------ consensus_3877#0 AGGCGGCGGCGGCGAAGGCCTACCCCTCCTGCGACGCCATCCCCTGCGACCAGTTCGAGG 539 consensus_3877#1 ------------------------------------------------------------ consensus_3877#0 TGGCCTTCCAGGCCGTCGAGCTCTGGATCGCCGACCGCGCCGTCCTCCCCGTCGAGAACT 599 consensus_3877#1 ------------------------------------------------------------ consensus_3877#0 CCCTCGGCGGCAGCATCCACCGCAACTACGACCTCCTCCTCCGCCACCGCCTCCACATCG 659 consensus_3877#1 ------------------------------------------------------------ consensus_3877#0 TCGGCGAGGTCCAGCTCCCCGTCCACCACTGCCTCCTCGCGCTCCCGGGCGTCCGCAGGG 719 consensus_3877#1 ------------------------------------------------------------ consensus_3877#0 ACCTCCTCACCCGCGTCATCTCCCACCCGCAGGCGCTCGCCCAGTGCGAGCTCACCCTCA 779 consensus_3877#1 ------------------------------------------------------------ consensus_3877#0 ACGCCATGGGCCTCAACGTCGCCCGCGAGGCCTTCGACGACACCGC 825 consensus_3877#1 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||