These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_388#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 707 fasta sequence [TCTCTTTTTTTGCACACATGGAGATAAGCATGTCTTTTTTTTTTCCCTAAGGAAATGTACAAACATGTCTTGTGGACAGAAAAGCAGGCTTTGCAAACATCTTCTCTAGGGTGAGAATATACTTATATATGATGAAGCTATGAGCTATATGAACAATAGGTACTAGAAATAAAATAAACCGTGAACACCGCAAAATTGGACTTTACCCAGTTCCTCAGGATCAGAGAACCTCTAAGCTGTACTATACTATCATCAAGAATTTTGCCCTATGGGCATATATGTATATCTGAACTCCAGCAGCAGCTGCAGCGGTTGCTGTACTTCACGAACCACAGCAAATGTCTGTCTTCCCGGGGATGTTATCTTTCACGCCAAACTTTGGGGCCAAGGGCCAAATGCTCAGACCACATGTTGTTTGTTTTTGAGACGAAGATTTACATACCAAGTTGCAAGGCAGCGCAATACCAATCCCACTAGTATCTTGAATACCGCGAGCATGAAGTATGTCAGGACTGACCAAAGCAGGATCCAAAATACTCTCCACATAAATGGGCCAACAGGAAGGAGGGTGGCATATACTGGAGTCAATACACGAATCACCACACACGCATGGGCAAGGGGGATGAATGTTAGGTCCTTCTGACGGTCATCAGTTTTGTCATTCAAAATCTGACTGCATAGGTCTTCCAAAAACTCTGAATAAGCAA] [+] EMBL CB648937 [TCTCTTTTTTTGCACACATGGAGATAAGCATGTCTTTTTTTTTTCCCTAAGGAAATGTACAAACATGTCTTGTGGACAGAAAAGCAGGCTTTGCAAACATCTTCTCTAGGGTGAGAATATACTTATATATGATGAAGCTATGAGCTATATGAACAATAGGTACTAGAAATAAAATAAACCGTGAACACCGCAAAATTGGACTTTACCCAGTTCCTCAGGATCAGAGAACCTCTAAGCTGTACTATACTATCATCAAGAATTTTGCCCTATGGGCATATATGTATATCTGAACTCCAGCAGCAGCTGCAGCGGTTGCTGTACTTCACGAACCACAGCAAATGTCTGTCTTCCCGGGGATGTTATCTTTCACGCCAAACTTTGGGGCCAAGGGCCAAATGCTCAGACCACATGTTGTTTGTTTTTGAGACGAAGATTTACATACCAAGTTGCAAGGCAGCGCAATACCAATCCCACTAGTATCTTGAATACCGCGAGCATGAAGTATGTCAGGACTGACCAAAGCAGGATCCAAAATACTCTCCACATAAATGGGCCAACAGGAAGGAGGGTGGCATATACTGGAGTCAATACACGAATCACCACACACGCATGGGCAAGGGGGATGAATGTTAGGTCCTTCTGACGGTCATCAGTTTTGTCATTCAAAATCTGACTGCATAGGTCTTCCAAAAACTCTGAATAAGCAA] consensusID : consensus_388#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATAAACCGTGAACACCGCAAAATTGGACTTTACCCAGTTCCTCAGGATCAGAGAACCTCTAAGCTGTACTATACTATCATCAAGAATTTTGCCATATGGGCATATATGTATATCTGAACTCAAGCAGCAGCTGCAGCGGTTGCTGTACTTCACGAACCACAGCAAATGTCTGTCTTCCCGGGGATGTTATCTTTCACACCAAACTTTGGTGCCAAGTGCAAAATGCTCAGTCCATTTCTACTC] [-] EMBL CF321917 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATAAACCGTGAACACCGCAAAATTGGACTTTACCCAGTTCCTCAGGATCAGAGAACCTCTAAGCTGTACTATACTATCATCAAGAATTTTGCCATATGGGCATATATGTATATCTGAACTCAAGCAGCAGCTGCAGCGGTTGCTGTACTTCACGAACCACAGCAAATGTCTGTCTTCCCGGGGATGTTATCTTTCACACCAAACTTTGGTGCCAAGTGCAAAATGCTCAGTCCATTTCTACTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_388#0 TCTCTTTTTTTGCACACATGGAGATAAGCATGTCTTTTTTTTTTCCCTAAGGAAATGTAC 60 consensus_388#1 ------------------------------------------------------------ consensus_388#0 AAACATGTCTTGTGGACAGAAAAGCAGGCTTTGCAAACATCTTCTCTAGGGTGAGAATAT 120 consensus_388#1 ------------------------------------------------------------ consensus_388#0 ACTTATATATGATGAAGCTATGAGCTATATGAACAATAGGTACTAGAAATAAAATAAACC 180 consensus_388#1 -TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT-----TAAAATAAACC 54 ** * * * * * * * * * * * * *********** consensus_388#0 GTGAACACCGCAAAATTGGACTTTACCCAGTTCCTCAGGATCAGAGAACCTCTAAGCTGT 240 consensus_388#1 GTGAACACCGCAAAATTGGACTTTACCCAGTTCCTCAGGATCAGAGAACCTCTAAGCTGT 114 ************************************************************ consensus_388#0 ACTATACTATCATCAAGAATTTTGCCCTATGGGCATATATGTATATCTGAACTCCAGCAG 300 consensus_388#1 ACTATACTATCATCAAGAATTTTGCCATATGGGCATATATGTATATCTGAACTCAAGCAG 174 ************************** *************************** ***** consensus_388#0 CAGCTGCAGCGGTTGCTGTACTTCACGAACCACAGCAAATGTCTGTCTTCCCGGGGATGT 360 consensus_388#1 CAGCTGCAGCGGTTGCTGTACTTCACGAACCACAGCAAATGTCTGTCTTCCCGGGGATGT 234 ************************************************************ consensus_388#0 TATCTTTCACGCCAAACTTTGGGGCCAAGGGCCAAATGCTCAGACCACATGTTGTTTGTT 420 consensus_388#1 TATCTTTCACACCAAACTTTGGTGCCAAGTGCAAAATGCTCAGTCCATTTCTACTC---- 290 ********** *********** ****** ** ********** *** * * * consensus_388#0 TTTGAGACGAAGATTTACATACCAAGTTGCAAGGCAGCGCAATACCAATCCCACTAGTAT 480 consensus_388#1 ------------------------------------------------------------ consensus_388#0 CTTGAATACCGCGAGCATGAAGTATGTCAGGACTGACCAAAGCAGGATCCAAAATACTCT 540 consensus_388#1 ------------------------------------------------------------ consensus_388#0 CCACATAAATGGGCCAACAGGAAGGAGGGTGGCATATACTGGAGTCAATACACGAATCAC 600 consensus_388#1 ------------------------------------------------------------ consensus_388#0 CACACACGCATGGGCAAGGGGGATGAATGTTAGGTCCTTCTGACGGTCATCAGTTTTGTC 660 consensus_388#1 ------------------------------------------------------------ consensus_388#0 ATTCAAAATCTGACTGCATAGGTCTTCCAAAAACTCTGAATAAGCAA 707 consensus_388#1 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||