Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3887 cluster # 3887       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3887#0 length = 756 sequences # 3  

consensusID : consensus_3887#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 756
fasta sequence
                              [AAGAAAGAAATCTGGAAGCAGACCCCTTATGACAAGGTTAAATCCCTACAGAATTTAGAGATGGAAGCATGGTTAGATTTGGCGTCAATATACACGAAGCTTGAATCATGGCATGACTCAAATGTCTGTCTTGACAAAGCCAAATCTATCAGTTCTTTCTCTCCCAAGTGCTGCCATGTCAGAGGCCTTATATTGCAGGCTCAGTCCTTGCACCAGGAAGCCCTGACGGCGTTCTCGCTCTCCCTCTCCATCGATCCAGACTATGTCCCAAGCATGGTTTGCATGGCAGGAATTCTAATCATTCTTGGAGGGAAATCATTGTCGATCGCAAGAACGTTCCTCCGTAATGCCCTCCGTTTGGAACCCACAAGCCATCAAGCCTGGCTGCGCCTTGGACTCGTCTTGAAATCTGAAGGATCACTGCTTGAAGCGGCCGACTGCTTCCAGGCAGCCTACGAGCTCCAGGAGTTATCGCCGATACAGGACTTCTCAGAGCACCTCCCCATCATGCTGCAATAGGAACGCAATAGCCCAGGATTCCTTGTAGAAATTACCTCTCACTTCTCAAACTGTGGCAACGCATTCTGTAGAAATCAGAAATTATGTGGATCTAGTTGCAAACTTGCAACTGTGAGCGTCTTTCTGTTGACGTCCTTACCAATTTTGTTCGTTCTTAGATTTTGAAAGATGTAGGAAAAATGCAATCGAATGAAGCATGCTGCCTTTATCAAGGGAAAAAAAATGTTATGCATAGCT]

[+] EMBL CA767605             [AAGAAAGAAATCTGGAAGCAGACCCCTTATGACAAGGTTAAATCCCTACAGAATTTAGAGATGGAAGCATGGTTAGATTTGGCGTCAATATACACGAAGCTTGAATCATGGCATGACTCAAATGTCTGTCTTGACAAAGCCAAATCTATCAGTTCTTTCTCTCCCAAGTGCTGCCATGTCAGAGGCCTTATATTGCAGGCTCAGTCCTTGCACCAGGAAGCCCTGACGGCGTTCTCGCTCTCCCTCTCCATCGATCCAGACTATGTCCCAAGCATGGTTTGCATGGCAGGAATTCTAATCATTCTTGGAGGGAAATCATTGTCGATCGCAAGAACGTTCCTCCGTAATGCCCTCCGTTTGGAACCCACAAGCCATCAAGCCTGGCTGCGCCTTGGACTCGTCTTGAAATCTGAAGGATCACTGCTTGAAGCGGCCGACTGCTTCCAGGCAGCCTACGAGCTCCAGGAGTTATCGCCGATACAGGACTTCTCAGAGCACCTCCCCATCATGCTGCAATAGGAACGCAATAGCCCAGGATTCCTTGTAGAAATTACCTCTCACTTCTCAAACTGTGGCAACGCATTCTGTAGAAATCAGAAATTATGTGGATCTAGTTGCAAACTTGCAACTGTGAGCGTCTTTCTGTTGACGTCCTTACCAATTTTGNTCGTTCTTAGATTTTGAAAGATGTAGGAAAAATGCAATCGAATGAAGCATGCTGNCTTTA                             ]
[-] EMBL CA762529             [                                                CAGAATTTAGAGATGGAAGCATGGTTAGATTNGGCGTCAATATACACGAAGCNTGAATCATGGCATGACTCAAATGTCTGTCTTGACAAAGCCAAATCTATCAGTTCTTTCTCTCCCAAGTGCTGCCATGTCAGAGGCCTTATATTGCAGGCTCAGTCCTTGCACCAGGAAGCCCTGANGGCGTTCTCGCTCTCCCTTTCCATCGATCCAGACTATGTCCCAAGCATGGTTTGCATGGCAGGAATTCTAATCATTCTTGGAGGGAAATCATTGTCGATCGCAAGAACGTTCCTCCGTAATGCCCTCCGTTTGGAACCCACAAGCCATCAAGCCTGGCTGCGCCTTGGACTCGTCTTGAAATCTGAAGGATCACTGCTTGAAGCGGCCGACTGCTTCCAGGCAGCCTACGAGCTCCAGGAGTTATCGCCGATACAGGACTTCTCAGAGCACCTCCCCATCATGCTGCAATAGGAACGCAATAGCCCAGGATTCCTTGTAGAAATTACCTCTCACTTCTCAAACTGTGGCAACGCATTCTGTAGAAATCAGAAATTATGTGGATCTAGTTGCAAACTTGCAACTGTGAGCGTCTTTCTGTTGACGTCCTTACCAATTTTGTTCGTTTTTAGATTTTGAAAGATGTAGGAAAAATGCAATCGAATGAAGCATGCTGCCTTTATCAAGGGAAAAAAA               ]
[-] EMBL CB639174             [                                                                                                                                                                            GCCATGTCAGAGGCCTTATATTGCAGGCTCAGTCCTTGCACCAGGAAGCCCTGACGGCGTTCTCGCTCTCCCTCTCCATCGATCCAGACTATGTCCCAAGCATGGTTTGCATGGCAGGAATTCTAACCATTCTTGGAGGGAAATCATTGTCGATTGCAAGAACGTTCCTCCGTAATGCCCTCCGTTTGGAACCCACAAGCCATCAAGCCTGGCTGCGCCTTGGACTCGTCTTGAAATCTGAAGGATCACTGCTTGAAGCGGCCGACTGCTTCCAGGCAGCCTACGAGCTCCAGGAGTTATCGCCGATACAGGACTTCTCAGAGCACCTCCCCATCATGCTGCAATAGGAACGCAATAGCCCAGGATTCCTTGTAGAAATTACCTCTCACTTCTCAAACTGTGGCAACGCATTCTGTAGAAATCAGAAATTATGTGGATCTAGTTGCAAACTTGCAACTGTGAGCGTCTTTCTGTTGACGTCCTTACCAATTTTGTTCGTTCTTAGATTTTGAAAGATGTAGGAAAAATGCAATCGAATGAAGCATGCTGCCTTTATCAAGGGAAAAATAATGTTATGCATAGCT]


>consensus_3887#0 AAGAAAGAAATCTGGAAGCAGACCCCTTATGACAAGGTTAAATCCCTACAGAATTTAGAG ATGGAAGCATGGTTAGATTTGGCGTCAATATACACGAAGCTTGAATCATGGCATGACTCA AATGTCTGTCTTGACAAAGCCAAATCTATCAGTTCTTTCTCTCCCAAGTGCTGCCATGTC AGAGGCCTTATATTGCAGGCTCAGTCCTTGCACCAGGAAGCCCTGACGGCGTTCTCGCTC TCCCTCTCCATCGATCCAGACTATGTCCCAAGCATGGTTTGCATGGCAGGAATTCTAATC ATTCTTGGAGGGAAATCATTGTCGATCGCAAGAACGTTCCTCCGTAATGCCCTCCGTTTG GAACCCACAAGCCATCAAGCCTGGCTGCGCCTTGGACTCGTCTTGAAATCTGAAGGATCA CTGCTTGAAGCGGCCGACTGCTTCCAGGCAGCCTACGAGCTCCAGGAGTTATCGCCGATA CAGGACTTCTCAGAGCACCTCCCCATCATGCTGCAATAGGAACGCAATAGCCCAGGATTC CTTGTAGAAATTACCTCTCACTTCTCAAACTGTGGCAACGCATTCTGTAGAAATCAGAAA TTATGTGGATCTAGTTGCAAACTTGCAACTGTGAGCGTCTTTCTGTTGACGTCCTTACCA ATTTTGTTCGTTCTTAGATTTTGAAAGATGTAGGAAAAATGCAATCGAATGAAGCATGCT GCCTTTATCAAGGGAAAAAAAATGTTATGCATAGCT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)