cluster # 3888

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Oryza sativa
cluster # 3888 cluster # 3888 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3888#0 length = 872 sequences # 2

consensus_3888#1 length = 381 sequences # 1

consensusID : consensus_3888#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 872
fasta sequence

                              [ACTTCCCTATACAAAATCCGATAGAGTACTTCTAATCTTCTATTTAGGTTGAAAAATAATTACAAGGATCCGTAGGTAACTTATAGAGTTTGTTTTCAATCCAGGTGTCAAGAGGGCATACCAAAGATCGTCGCTCCGGCGGCAATGGAGGAGCAGCTGAAGAGGCCTATGACGATGAAGAAGATCTCGGTGCAAAAGAAGTCGCCGTCGGGGAAGTTCCTGCACATCCTCCACGCCTCGCCGACGGGGAAGCTCTCGGTGACCAACTCGCCGGAGGCGCCGGCGGTGATGATGACCACACCGACGAAGCATGCCGCCGCCGCCGCGCAGTCGAAGCAGCTGCTGGGGAGCCCCCGGGTGGCCTCGCCGTCGTGCCTCTGCTCGCCGACGACGCACGCCGGCTCGTTCCGGTGCAGGCTCCACCGCGGCGGCGGCGGCGCCGCCGCCGCCGCCGCCGGGCTCGCCGGATCCATCGGCTGCGGCTGCGGCGAGATGGACAAGAAGCCCGGTGTATGACAAAGTCCCGTGCAGGTGCAATGCACGTCAAAAATTGCGCCATGTTTGCTGTTCTTCTTCAGAAATGGCCGGGCCTTTTTTCTCCCCCTCCCTTGCTTTTGTGATGCAGGGAAGGGAGAAGAGAATGATGATCTTAGAAGCTCTGCACCTCCATTTTTCTTGTAAATGCTACTCCTACTATTGAGACCTTGATCATTCAAGATTTCAGTCAGTTTGGCGGTGTTGTTTTCCCTATCACATTTCTCTGGATTGTGTGTTCTCCCTTCCACTGCTCCTCAAACAACCTCTTGATCGAAAAAAAAGATCTATGGCAATATATAATGACAGGTATCAAACGGCTGGTTTCATTCTAAAAA]

[+] EMBL AK119328             [ACTTCCCTATACAAAATCCGATAGAGTACTTCTAATCTTCTATTTAGGTTGAAAAATAATTACAAGGATCCGTAGGTAACTTATAGAGTTTGTTTTCAATCCAGGTGTCAAGAGGGCATACCAAAGATCGTCGCTCCGGCGGCAATGGAGGAGCAGCTGAAGAGGCCTATGACGATGAAGAAGATCTCGGTGCAAAAGAAGTCGCCGTCGGGGAAGTTCCTGCACATCCTCCACGCCTCGCCGACGGGGAAGCTCTCGGTGACCAACTCGCCGGAGGCGCCGGCGGTGATGATGACCACACCGACGAAGCATGCCGCCGCCGCCGCGCAGTCGAAGCAGCTGCTGGGGAGCCCCCGGGTGGCCTCGCCGTCGTGCCTCTGCTCGCCGACGACGCACGCCGGCTCGTTCCGGTGCAGGCTCCACCGCGGCGGCGGCGGCGCCGCCGCCGCCGCCGCCGGGCTCGCCGGATCCATCGGCTGCGGCTGCGGCGAGATGGACAAGAAGCCCGGTGTATGACAAAGTCCCGTGCAGGTGCAATGCACGTCAAAAATTGCGCCATGTTTGCTGTTCTTCTTCAGAAATGGCCGGGCCTTTTTTCTCCCCCTCCCTTGCTTTTGTGATGCAGGGAAGGGAGAAGAGAATGATGATCTTAGAAGCTCTGCACCTCCATTTTTCTTGTAAATGCTACTCCTACTATTGAGACCTTGATCATTCAA                                                                                                                                                            ]
[+] EMBL AU182503             [                                                                                                                                                                                                                                                                                                                                                                                                                                                       CCGCCGCCGCCGCCGCCGGGCTCGCCGGATCCATCGGCTGCGGCTGCGGCGAGATGGACAAGAAGCCCGGTGTATGACAAAGTCCCGTGCAGGTGCAATGCACGTCAAAAATTGCGCCATGTTTGCTGTTCTTCTTCAGAAATGGCCGGGCCTTTTTTCTCTCCCTCCCTTGCTTTTGTGATGCAGGGAAGGGAGAAGAGAATGATGATCTTAGAAGCTCTGCACCTCCATTTTTCTTGTAAATGCTACTCCTACTATTGAGACCTTGATCATTCAAGATTTCAGTCAGTTTGGCGGTGTTGTTTTCCCTATCACATTTCTCTGGATTGTGTGTTCTCCCTTCCACTGCTCCTCAAACAACCTCTTGATCGAAAAAAAAGATCTATGGCAATATATAATGACAGGTATCAAACGGCTGGTTTCATTCTAAAAA]




>consensus_3888#0
ACTTCCCTATACAAAATCCGATAGAGTACTTCTAATCTTCTATTTAGGTTGAAAAATAAT
TACAAGGATCCGTAGGTAACTTATAGAGTTTGTTTTCAATCCAGGTGTCAAGAGGGCATA
CCAAAGATCGTCGCTCCGGCGGCAATGGAGGAGCAGCTGAAGAGGCCTATGACGATGAAG
AAGATCTCGGTGCAAAAGAAGTCGCCGTCGGGGAAGTTCCTGCACATCCTCCACGCCTCG
CCGACGGGGAAGCTCTCGGTGACCAACTCGCCGGAGGCGCCGGCGGTGATGATGACCACA
CCGACGAAGCATGCCGCCGCCGCCGCGCAGTCGAAGCAGCTGCTGGGGAGCCCCCGGGTG
GCCTCGCCGTCGTGCCTCTGCTCGCCGACGACGCACGCCGGCTCGTTCCGGTGCAGGCTC
CACCGCGGCGGCGGCGGCGCCGCCGCCGCCGCCGCCGGGCTCGCCGGATCCATCGGCTGC
GGCTGCGGCGAGATGGACAAGAAGCCCGGTGTATGACAAAGTCCCGTGCAGGTGCAATGC
ACGTCAAAAATTGCGCCATGTTTGCTGTTCTTCTTCAGAAATGGCCGGGCCTTTTTTCTC
CCCCTCCCTTGCTTTTGTGATGCAGGGAAGGGAGAAGAGAATGATGATCTTAGAAGCTCT
GCACCTCCATTTTTCTTGTAAATGCTACTCCTACTATTGAGACCTTGATCATTCAAGATT
TCAGTCAGTTTGGCGGTGTTGTTTTCCCTATCACATTTCTCTGGATTGTGTGTTCTCCCT
TCCACTGCTCCTCAAACAACCTCTTGATCGAAAAAAAAGATCTATGGCAATATATAATGA
CAGGTATCAAACGGCTGGTTTCATTCTAAAAA

consensusID : consensus_3888#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 381
fasta sequence

                              [GTGACTAGTACTTCCCTATACAAAATCCGATAGAGTACTTCTAATCTTCTATTTAGGTTGAAAAATAATTACAAGGNTCCGTAGTAACTTATAGAGTTTGTTTTCAATCCAGGTGTCAAGAGGGCATACCAAAGATCGTCGCTCCGGCGGCGGCGCCCCNGNCGNCNCGGNGNCTTCGCCGGTTCCATCGGCTGCGGCTGCGGCGAGATGGACAAGAAGCCCGGTGTATGACAAAGTCCCGTGCAGGTGCAATGCACGTCAAAANTTGCGCCATGTTTGCTGTTCTTCTTCAGAAATGGCCGGGCCTTTTTNTTCTCCCTCCCTTGCTTTTGTTNATGCAGGGAAGGGAGAAGAGGAATGATGATCTTAGGAAGCTCTGCA]

[+] EMBL C73193               [GTGACTAGTACTTCCCTATACAAAATCCGATAGAGTACTTCTAATCTTCTATTTAGGTTGAAAAATAATTACAAGGNTCCGTAGTAACTTATAGAGTTTGTTTTCAATCCAGGTGTCAAGAGGGCATACCAAAGATCGTCGCTCCGGCGGCGGCGCCCCNGNCGNCNCGGNGNCTTCGCCGGTTCCATCGGCTGCGGCTGCGGCGAGATGGACAAGAAGCCCGGTGTATGACAAAGTCCCGTGCAGGTGCAATGCACGTCAAAANTTGCGCCATGTTTGCTGTTCTTCTTCAGAAATGGCCGGGCCTTTTTNTTCTCCCTCCCTTGCTTTTGTTNATGCAGGGAAGGGAGAAGAGGAATGATGATCTTAGGAAGCTCTGCA]




>consensus_3888#1
GTGACTAGTACTTCCCTATACAAAATCCGATAGAGTACTTCTAATCTTCTATTTAGGTTG
AAAAATAATTACAAGGNTCCGTAGTAACTTATAGAGTTTGTTTTCAATCCAGGTGTCAAG
AGGGCATACCAAAGATCGTCGCTCCGGCGGCGGCGCCCCNGNCGNCNCGGNGNCTTCGCC
GGTTCCATCGGCTGCGGCTGCGGCGAGATGGACAAGAAGCCCGGTGTATGACAAAGTCCC
GTGCAGGTGCAATGCACGTCAAAANTTGCGCCATGTTTGCTGTTCTTCTTCAGAAATGGC
CGGGCCTTTTTNTTCTCCCTCCCTTGCTTTTGTTNATGCAGGGAAGGGAGAAGAGGAATG
ATGATCTTAGGAAGCTCTGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3888#0      ACTTCCCTATACAAAATCCGATAGAGTACTTCTAATCTTCTATTTAGGTTGAAAAATAAT 60
consensus_3888#1      ------------------------------------------------------------
                                                                                  

consensus_3888#0      TACAAGGATCCGTAGGTAACTTATAGAGTTTGTTTTCAATCCAGGTGTCAAGAGGGCATA 120
consensus_3888#1      ------------------------------------------------------------
                                                                                  

consensus_3888#0      CCAAAGATCGTCGCTCCGGCGGCAATGGAGGAGCAGCTGAAGAGGCCTATGACGATGAAG 180
consensus_3888#1      ------------------------------------------------------------
                                                                                  

consensus_3888#0      AAGATCTCGGTGCAAAAGAAGTCGCCGTCGGGGAAGTTCCTGCACATCCTCCACGCCTCG 240
consensus_3888#1      ------------------------------------------------------------
                                                                                  

consensus_3888#0      CCGACGGGGAAGCTCTCGGTGACCAACTCGCCGGAGGCGCCGGCGGTGATGATGACCACA 300
consensus_3888#1      -----------------------------------GTGACTAGTACTTCCCTATACAAAA 25
                                                         *   *  *   *       ** * *

consensus_3888#0      -CCGACGAAGCATGCCGCCGCCGCCGCGCAGTCGAAGCAGCTGCTGGGGAGCCCCCGGGT 359
consensus_3888#1      TCCGATAGAGTACTTCTAATCTTCTATTTAGGTTGAAAAATAATTACAAGGNTCCGTAGT 85
                       ****   ** *   *    *  *     **    *  *     *     *  **   **

consensus_3888#0      GGCCTCGCCGTCGTGCCTCTGCTCGCCGACGACGCACGCCGGCTCGTTCCGGTGCAGGCT 419
consensus_3888#1      AACTT----ATAGAGTTTGTTTTCAATCCAGGTGT-CAAGAGGGCATACC-----AAAGA 135
                        * *     * * *  * *  **      *  *  *    *  * * **     *    

consensus_3888#0      CCACCGCGGCGGCGGCGGCGCCGCCGCCGCCGCCGCCGGGCTCGCCGGATCCATCGGCTG 479
consensus_3888#1      TCGTCGCTCCGGCGGCGGCGCCCCNGNCGNCNCGGN-GNCTTCGCCGGTTCCATCGGCTG 194
                       *  ***  ************* * * ** * * *  *   ******* ***********

consensus_3888#0      CGGCTGCGGCGAGATGGACAAGAAGCCCGGTGTATGACAAAGTCCCGTGCAGGTGCAATG 539
consensus_3888#1      CGGCTGCGGCGAGATGGACAAGAAGCCCGGTGTATGACAAAGTCCCGTGCAGGTGCAATG 254
                      ************************************************************

consensus_3888#0      CACGTCAAAAATTGCGCCATGTTTGCTGTTCTTCTTCAGAAATGGCCGGGCCTTTTTTCT 599
consensus_3888#1      CACGTCAAAANTTGCGCCATGTTTGCTGTTCTTCTTCAGAAATGGCCGGGCCTTTTTNTT 314
                      ********** **********************************************  *

consensus_3888#0      CCCCCTCCCTTGCTTTTGT-GATGCAGGGAAGGGAGAAGAG-AATGATGATCTTAG-AAG 656
consensus_3888#1      CTCCCTCCCTTGCTTTTGTTNATGCAGGGAAGGGAGAAGAGGAATGATGATCTTAGGAAG 374
                      * *****************  ******************** ************** ***

consensus_3888#0      CTCTGCACCTCCATTTTTCTTGTAAATGCTACTCCTACTATTGAGACCTTGATCATTCAA 716
consensus_3888#1      CTCTGCA----------------------------------------------------- 381
                      *******                                                     

consensus_3888#0      GATTTCAGTCAGTTTGGCGGTGTTGTTTTCCCTATCACATTTCTCTGGATTGTGTGTTCT 776
consensus_3888#1      ------------------------------------------------------------
                                                                                  

consensus_3888#0      CCCTTCCACTGCTCCTCAAACAACCTCTTGATCGAAAAAAAAGATCTATGGCAATATATA 836
consensus_3888#1      ------------------------------------------------------------
                                                                                  

consensus_3888#0      ATGACAGGTATCAAACGGCTGGTTTCATTCTAAAAA 872
consensus_3888#1      ------------------------------------