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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3893#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 770 fasta sequence
[AAATGGAATGAATAAAATGATAAGAGACCTAGCAGCCTATAAAATGTATACAGAATATACCAATGAACAAATATGGTTTACAATCAACATGGATGTCAGTAATTTCCCTATGGGTATATATTCACAAGGAAGCAATCTCAAATTCTCTCAGTATTATAGTATAACTAATGCTGTATGTACTGTGGTGAGGAGTGCATCCGGCAAACCCATTCAGCGCTTCAAGGAAGAGAACCACAGAGGATTCCACTCTTCAGGGTTCCAAGCTCCAACTATCAGGAGGGGCCAAAAGGCCAAGCAATAAAATCCATGTCCAAAGCAAAGCTCCCGCGTGGTTACTAAAACAATAACCAGTGCTTCTTCCTAGGCTTGTATTTGCTAGGGAGATCTCGAGCATCATATAGCGAGTTATAGTGAACTTCCGACCAGAAACTTAGCCAAATTTCTCTCTGTGGTGCCTGATACTGTGGAACAATTTCAACAAAACATGTGTCTCTGAATGATGTTAGAAGGCATATTTTTGCAGCAAACTTATCAGCAGCAGCTTGCAATGTGACATGGTCGCCCCATTCACCAGATTTTTTCATCTTCTTGCAATAATGTTTATATTTCATTGGAACATAACCTTCATACAAAGAGTTACATGCCTTGAGCTGCTTCACTATTTCCTTTCGAACATGCTTGTGATAATCGGGTGATCGATATAGCTGGTCTGATAGTGCACGGAACTGACAATTGCCATCGCCAGAAACTCTCACTTCATACAAGCCATA]
[+] EMBL CB667355 [AAATGGAATGAATAAAATGATAAGAGACCTAGCAGCCTATAAAATGTATACAGAATATACCAATGAACAAATATGGTTTACAATCAACATGGATGTCAGTAATTTCCCTATGGGTATATATTCACAAGGAAGCAATCTCAAATTCTCTCAGTATTATAGTATAACTAATGCTGTATGTACTGTGGTGAGGAGTGCATCCGGCAAACCCATTCAGCGCTTCAAGGAAGAGAACCACAGAGGATTCCACTCTTCAGGGTTCCAAGCTCCAACTATCAGGAGGGGCCAAAAGGCCAAGCAATAAAATCCATGTCCAAAGCAAAGCTCCCGCGTGGTTACTAAAACAATAACCAGTGCTTCTTCCTAGGCTTGTATTTGCTAGGGAGATCTCGAGCATCATATAGCGAGTTATAGTGAACTTCCGACCAGAAACTTAGCCAAATTTCTCTCTGTGGTGCCTGATACTGTGGAACAATTTCAACAAAACATGTGTCTCTGAATGATGTTAGAAGGCATATTTTTGCAGCAAACTTATCAGCAGCAGCTTGCAATGTGACATGGTCGCCCCATTCACCAGATTTTTTCATCTTCTTGCAATAATGTTTATATTTCATTGGAACATAACCTTCATACAAAGAGTTACATGCCTTGAGCTGCTTCACTATTTCCTTTCGAACATGCTTGTGATAATCGGGTGATCGATATAGCTGGTCTGATAGTGCACGGAACTGACAATTGCCATCGCCAGAAACTCTCACTTCATACAAGCC ]
[-] EMBL OSS12606A [ AACTTAGCCAAATTTCTCTCTGTGGTGCCTGATACTGTGGAACAATTTCAACAAAACATGTGTCTCTGAATGATGTTAGAAGGCATATTTTTGCAGCAAACTTATCAGCAGCAGCTTGCAATGTGACATGGTCGCCCCATTCACCAGATTTTTTCATCTTCTTGCAATAATGTTTATATTTCATTGGAACATAACCTTCATACAAAGAGTTACATGCCTTGAGCTGCTTCACTATTTCCTTTCGAACATGCTTGTGATAATCGGGTGATCGATATAGCTGGTCTGATAGTGCACGGAACTGACAATTGCCATCGCCAGAAACTCTCACTTCATACAAGCCATA]
consensusID : consensus_3893#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 423 fasta sequence
[GTCTTGTAGTTCCGTGCACTATCAGACCAGCTATATCGATCACCCGATTATCACAAGCATGTTCGAAAGGAAATAGTGAAGCAGGTACAGCAGATCACCTTCTGGAATTACCGGTCTTTAGTTTATATTACTGTGCTCATATGTTTAAACTGCAATATCTTTATCAGATGCCGTAACACAATGAATCTGTCATTCTCTGCTCTAGTTATTGCATTTTTTTTTCTCCAGGTGATGAATGAAGAAACAAAATTTCATCAATATATTGTAGTTATATGCTGATAAACTCCTGTTAGAGATACATGCATTCTTACCCATGCTGTTTTTCTACTTGTCTAGCTCAAGGCATGTAACTCTTTGTATGAAGNTNNNGTTNNNNNGAAATATNNACATTATTGCANNNNNNNNAAAAAGNNNNNACTTCTG]
[+] EMBL CF196890 [GTCTTGTAGTTCCGTGCACTATCAGACCAGCTATATCGATCACCCGATTATCACAAGCATGTTCGAAAGGAAATAGTGAAGCAGGTACAGCAGATCACCTTCTGGAATTACCGGTCTTTAGTTTATATTACTGTGCTCATATGTTTAAACTGCAATATCTTTATCAGATGCCGTAACACAATGAATCTGTCATTCTCTGCTCTAGTTATTGCATTTTTTTTTCTCCAGGTGATGAATGAAGAAACAAAATTTCATCAATATATTGTAGTTATATGCTGATAAACTCCTGTTAGAGATACATGCATTCTTACCCATGCTGTTTTTCTACTTGTCTAGCTCAAGGCATGTAACTCTTTGTATGAAGNTNNNGTTNNNNNGAAATATNNACATTATTGCANNNNNNNNAAAAAGNNNNNACTTCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3893#0 AAATGGAATGAATAAAATGATAAGAGACCTAGCAGCCTATAAAATGTATACAGAATATAC 60
consensus_3893#1 ------------------------------------------------------------
consensus_3893#0 CAATGAACAAATATGGTTTACAATCAACATGGATGTCAGTAATTTCCCTATGGGTATATA 120
consensus_3893#1 ------------------------------------------------------------
consensus_3893#0 TTCACAAGGAAGCAATCTCAAATTCTCTCAGTATTATAGTATAACTAATGCTGTATGTAC 180
consensus_3893#1 ------------------------------------------------------------
consensus_3893#0 TGTGGTGAGGAGTGCATCCGGCAAACCCATTCAGCGCTTCAAGGAAGAGAACCACAGAGG 240
consensus_3893#1 ------------------------------------------------------------
consensus_3893#0 ATTCCACTCTTCAGGGTTCCAAGCTCCAACTATCAGGAGGGGCCAAAAGGCCAAGCAATA 300
consensus_3893#1 -------GTCTTGTAGTTCCGTGCACTATCAGACCAGCTATATCGATCACCCGATTATCA 53
* ***** ** * * * * * * * ** * * *
consensus_3893#0 AAATCCATGTCCAAAGCAAAGCTCCCGCGTGGTTACTAAAACAATAACCAGTGCTTCTTC 360
consensus_3893#1 CAAGC-ATGTTCGAAAGGAAATAGTGAAGCAGGTAC--AGCAGATCACCTTCTGGAATTA 110
** * **** * ** ** * * *** * ** *** **
consensus_3893#0 CTAGGCTTGTATTTGCTAGGGAGATCTCGAGCATCATATAGCGAGTTATAGTGAACTTCC 420
consensus_3893#1 CCGGTCTTTAGTTTATATTACTGTGCTCATATGTT-TAAACTGCAATATCTTTATCAGAT 169
* * *** *** * *** * ** * * *** * * *
consensus_3893#0 GACCAGAAACTTAGCCAAATTTCTCTCTGTGGTGCCTGATACTGTGGAACAATTTCAACA 480
consensus_3893#1 G--CCGTAACACAATGAATCTGTCATTCTCTGCTCTAGTTATTGCATTTTTTTTTCTCCA 227
* * * *** * ** * * * * * ** ** **** **
consensus_3893#0 AAACATGTGTCTCTGAATGATGTTAGAA-GGCATATTTTTGCAGCAAACTTATCAGCAGC 539
consensus_3893#1 GGTGATGAATGAAGAAACAAAATTTCATCAATATATTGTAGTTATATGCTGATAAACTCC 287
*** * ** * ** * ***** * * * ** ** * * *
consensus_3893#0 AGCTTGCAATGTGACATGGTCGCCCCATTCACCAGATTTTTTCATCTTCTTGCAATAATG 599
consensus_3893#1 TGTTAGAGAT---ACATG-CATTCTTACCCATGCTGTTTTTCTACTTGTCTAGCTCAAGG 343
* * * ** ***** * * ** ***** * * * ** *
consensus_3893#0 TTTATATTTCATTGGAACATAACCTTCATACAAAGAGTTACATGCCTTGAGCTGCTTCAC 659
consensus_3893#1 CATGTAACTCTTTGTATGAAGNTNNNGTTNNNNNGAAATATNNACATT--ATTGCANNNN 401
* ** ** *** * * * ** ** * ** ***
consensus_3893#0 TATTTCCTTTCGAACATGCTTGTGATAATCGGGTGATCGATATAGCTGGTCTGATAGTGC 719
consensus_3893#1 NNNNAAAAAGNNNNNACTTCTG-------------------------------------- 423
* **
consensus_3893#0 ACGGAACTGACAATTGCCATCGCCAGAAACTCTCACTTCATACAAGCCATA 770
consensus_3893#1 ---------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||