|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3897#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 801 fasta sequence
[GGCGCACACGCAGCCGAGCGCGACGCCGCCCTCCATTGGCCTCGCCAGGCTGACTCAGTTGCCTGTGAGACTTCTGAGGGAGTCACCAGCCTAAAGTCACATGTAGTACTTGTTGGAGAGGAAAAATGCTGAATTTAGGAAGCAGATTAATGAACTAACAATGAAGCTTCAATTAGCTGGGCAAGGAAAAGACGAGGTTCTATATAAGGCTGGTCCTTTTGGTACTGTCAAGGCTGNTAGAAAAAATCCAACAGNTATCCCTGATGAATCCATAAATCCCAGATTGGCCAAGATATTGCAACAGGNTGCTATAAAGAAAGAACTAATTGTTGCGTTGGCAAACTCCAATGTGAGAGAGATGCTTGAGATGTGGTTTACTAACATCAAACGAGTTGGGATTTCAAATTATTTAATTGTTGCATTGGATGACAGCACCGAAACCTTTTGCAAGTCTAAAGGTGTTCCATTTTATAGGCGGGATCCTGACGAAGGAGTTGACAACATCGGAAAGGTAGGTGGAAACCATGCTGNGTCTGGACTAAAGTTTCGCATATTGAGGGAATTCTTGCAGCTTGGATATAGTGTGCTCCTATCAGATATCGATATTATTTTCTTCCAGAATCCGTTTGATCATCTTTACAGAGATGCTGATGTANAGTCAATGAGTGATGGTCATGACAATANGACAGCTTATGGNTTCAATGATGTATTTGNTGAGCCCTTAATGGGCT-GGCAAGATACGCACACACAATGCGCATATGGGNTTATAATTCCGGATTTTTCTTTCTAAAGGCNACAATT]
[+] EMBL CA767246 [GGCGCACACGCAGCCGAGCGCGACGCCGCCCTCCATTGGCCTCGCCAGGCTGACTCAGTTGCCTGTGAGACTTCTGAGGGAGTCACCAGCCTAAAGTCACATGTAGTACTTGTTGGAGAGGAAAAATGCTGAATTTAGGAAGCAGATTAATGAACTAACAATGAAGCTTCAATTAGCTGGGCAAGGAAAAGACGAGGTTCTATATAAGGCTGGTCCTTTTGGTACTGTCAAGGCTGNTAGAAAAAATCCAACAGNTATCCCTGATGAATCCATAAATCCCAGATTGGCCAAGATATTGCAACAGGNTGCTATAAAGAAAGAACTAATTGTTGCGTTGGCAAACTCCAATGTGAGAGAGATGCTTGAGATGTGGTTTACTAACATCAAACGAGTTGGGATTTCAAATTATTTAATTGTTGCATTGGATGACAGCACCGAAACCTTTTGCAAGTCTAAAGGTGTTCCATTTTATAGGCGGGATCCTGACGAAGGAGTTGACAACATCGGAAAGGTAGGTGGAAACCATGCTGNGTCTGGACTAAAGTTTCGCATATTGAGGGAATTCTTGCAGCTTGGATATAGTGTGCTCCTATCAGATATCGATATTATTTTCTTCCAGAATCCGTTTGATCATCTTTACAGAGATGCTGATGTANAGTCAATGAGTGATGGTCATGACAATANGACAGCTTATGGNTTCAATGATGTATTTGNTGAGCCCTTAATGGGCT GGCAAGATACGCACACACAATGCGCATATGGGNTTATAATTCCGGATTTTTCTTTCTAAAGGCNACAATT]
[+] EMBL CA997950 [ CCTAAAGTCACATGTAGTA TTGTTGGAGAGGAAAAATGCTGAATTTAGGAAGCAGATTAATGAACTAACAATGAAGCTTCAATTAGCTGGGCAAGGAAAAGACGAGGTTCTATATAAGGCTGGTCCTTTTGGTACTGTCAAGGCTATTAGAAAAAATCCAACAGTTATCCCTGATGAATCCATAAATCCCAGATTGGCCAAGATATTGCAACAGGTTGCTATAAAGAAAGAACTAATTGTTGCGTTGGCAAACTCCAATGTGAGAGAGATGCTTGAGATGTGGTTTACTAACATCAAACGAGTTGGGATTTCAAATTATTTAATTGTTGCATTGGATGACAGCACTGAAACCTTTTGCAAGTCTAAAGGTGTTCCATTTTATAGGCGGGATCCTGACGAAGGAGTTGACAATATTGGAAAGGTAGGTGGAAACCATGCTGTGTCTGGACTAAAGTTTCGCATATTGAGGGAATTCTTGCAGCTTGGATATAGTGTGCTCCTATCAGATATCGATATTATTTTCTTCCAGAATCCGTTTGATCATCTTTACAGAGATGCTGATGTAGAGTCAATGAGTGATGGTCATGACAATAGGACAGCTTATGGTTTCAATGATGTATTTGATGAGCCCTTAATGGGCTGGGGCAGATACGCACACACAATGCGCATATGGGTTTATAATTCCG ]
consensusID : consensus_3897#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence
[TTTTTTTTTTTTTTTGGATCCAAAATGTGATGAGCTCTTTTATAGAGATCACTAATCTGTGTCTTCATTCAGGGTTCCAATAGCAACAGGTACACAAAAAAAAAAGTCCATTTGCCGTGTTACGACAACTACAGTTAATCAGTTATTATTCTGATCCATCAGGAAAATGTTCAAGGGCATTCTGTTTTCCATTGACGTAAAACTCAATCACTGCTTTCATGCGTCCCGACTTATCAGGATGGTAATTCAAGTGCACAATCACTGGCTTCAACTTGCGCAGATTAGCATCTTTCCTCACAGTCTTGAATAGAACTTTGCTGTTCATAAATTGGTATATATCCATGGTTCTTTTGGATATATGGAGACCTTCATAACCTGGATGTGAGGGGAAGAACAGTTCCTCATTGAAAACAGCTTGATCCCATGATTTGGGTTCACGAGAAAGGCGGCCAGCTACTCTATCCAAAAGCTCAATAGAAGGAATTGTTGGCCTTATGAAGAAAAATCCGGAATTATAAACCCATATGCGCATTGTGTGTGCGTATCTTGCCCAGCCCATTAAGGGCTCATCAAATACATCATTGAAACCCCCCTTGTCTCGGCCTC]
[+] EMBL CA762561 [TTTTTTTTTTTTTTTGGATCCAAAATGTGATGAGCTCTTTTATAGAGATCACTAATCTGTGTCTTCATTCAGGGTTCCAATAGCAACAGGTACACAAAAAAAAAAGTCCATTTGCCGTGTTACGACAACTACAGTTAATCAGTTATTATTCTGATCCATCAGGAAAATGTTCAAGGGCATTCTGTTTTCCATTGACGTAAAACTCAATCACTGCTTTCATGCGTCCCGACTTATCAGGATGGTAATTCAAGTGCACAATCACTGGCTTCAACTTGCGCAGATTAGCATCTTTCCTCACAGTCTTGAATAGAACTTTGCTGTTCATAAATTGGTATATATCCATGGTTCTTTTGGATATATGGAGACCTTCATAACCTGGATGTGAGGGGAAGAACAGTTCCTCATTGAAAACAGCTTGATCCCATGATTTGGGTTCACGAGAAAGGCGGCCAGCTACTCTATCCAAAAGCTCAATAGAAGGAATTGTTGGCCTTATGAAGAAAAATCCGGAATTATAAACCCATATGCGCATTGTGTGTGCGTATCTTGCCCAGCCCATTAAGGGCTCATCAAATACATCATTGAAACCCCCCTTGTCTCGGCCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3897#0 GGCGCACACGCAGCCGAGCGCGACGCCGCCCTCCATTGGCCTCGCCAGGCTGACTCAGTT 60
consensus_3897#1 ------------------------------------------------------------
consensus_3897#0 GCCTGTGAGACTTCTGAGGGAGTCACCAGCCTAAAGTCACATGTAGTACTTGTTGGAGAG 120
consensus_3897#1 ---------------------------------------TTTTTTTTTTTTTTTGGATCC 21
* * * ** *****
consensus_3897#0 GAAAAATGCTGAATT-TAGGAAGCAGATTAATGAACTAACAATGAAGCTTCAATTAGCTG 179
consensus_3897#1 AAAATGTGATGAGCTCTTTTATAGAGATCACTAATCT------GTGTCTTCATTCA---G 72
*** ** *** * * * **** * * * ** * ***** * * *
consensus_3897#0 GGCAAGGAAAAGACGAGGTTCTATATAAGGCTGGTCCTTTTGGTACTGTCAAGGCTGNTA 239
consensus_3897#1 GGTTCCAATAGCAACAGGTACACAAAAAAAAAAGTCCATTTGCCG-TGTTACGACAACTA 131
** * * * **** * * ** **** **** *** * * * **
consensus_3897#0 GAAAAAATCCAACAGNTATCCCTGATGAATCCATAAATCCCAGATTGGCCAAGATATTGC 299
consensus_3897#1 CAGTTAATC-AGTTATTATTC-TGATCCATCAGGAAA------ATGTTCAAGGGCATT-- 181
* **** * *** * **** *** *** ** * * * ***
consensus_3897#0 AACAGGNTGCTATAAAGAAAGAACT-AATTGTTGCGTTGGCAAACTCCAA--TGTGAGAG 356
consensus_3897#1 --CTGTTTTCCATTGACGTAAAACTCAATCACTGCTTTCATGCGTCCCGACTTATCAGGA 239
* * * * ** * * **** *** *** ** ** * * * **
consensus_3897#0 AGATGCTTGAGATGTG-GTTTACTAACATCAAACGAGTTGGGATTTCAAATTATTTAATT 415
consensus_3897#1 TGGTAATTCAAGTGCACAATCACTGGCTTCAA-CTTGCGCAGATT--AGCATCTTTCCTC 296
* * ** * ** * *** * **** * * **** * * *** *
consensus_3897#0 GTTGCATTGGATGACAGCACCGAAACCTTTTGCAAGTCTAAAGGTGTTCCATTTTATAGG 475
consensus_3897#1 ACAGTCTTGAATAGAA-----------CTTTGCTGTTCATAAATTGGT-----ATATATC 340
* *** ** * ***** ** ** ** * ****
consensus_3897#0 CGGGATCCTGACGAAGGAGTTGACAACATCGGAAAGGTAGGTGGAAACCATGCTGNGTCT 535
consensus_3897#1 CATGGTTCTTTTGGATATATGGAGACCTTCATAA-------------CCTGGATGTGAGG 387
* * * ** * * * ** * * ** ** ** * ** *
consensus_3897#0 GGACTAAAGTTTCGCATATTGAGGGAATTCTTGCAGCTTGGATATAGTGTGCTCCTATCA 595
consensus_3897#1 GGAAGAACAGTTC-CTCATTGAAAACAG-CTTGATCCCATGATTTGG-GTTCACGAGAAA 444
*** ** *** * ***** * **** * *** * * ** * * *
consensus_3897#0 GATATCGATATTATTTTCTTCCAGAATCCGTTTGATCATCTTTACAGAGATGCTGATGTA 655
consensus_3897#1 GGCGGCCA-GCTACTCTATCCAAAAGCTCAATAGAAGGAATT-GTTGGCCTTATGAAGAA 502
* * * ** * * * * * * * * ** ** * * *** * *
consensus_3897#0 NAGTCAATGAGTGATGGTCATGACAATANGACAGCTTATGGNTTCAATGATGTATTTGNT 715
consensus_3897#1 AAATCCG-GAATTATAAAC----CCATATG-CGCATTGTGTGTGCG----TAT-CTTGCC 551
* ** ** * ** * * *** * * ** ** * * * * ***
consensus_3897#0 GAGCCCTTAATGGGCTGGCAAGATACGCACACACAATGCGCATATGGGNTTATAATTCCG 775
consensus_3897#1 CAGCCCATTAAGGGCTCATCAAATACATCATTGAAACCCCCCTT---GTCTCGGCCTC-- 606
***** * * ***** * **** ** * * * * * **
consensus_3897#0 GATTTTTCTTTCTAAAGGCNACAATT 801
consensus_3897#1 --------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||