These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3899#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence [CGAGGCCCGCCATGCGCAGCCCCTTCGGGGAGGAGGTACGACGGCGTCAGTGCACTGCACCGTTCAGGCGTCGGTTGTCCATGGCTGTTCGAGCCGCTGGATGGCAGCCCCTGCGGGAAGGTGATCGACATCACGCGCCAACTTCTCAGCCATGCTCACCTCGGCATCTGCACGCGGTGACGCTGCAGCGCGGAAGCGGGCTGGTGCCAGCTGCTTGCTGTCAGCCAGAACAAGTCCGACCTGGAGTTCTTGTCAGGTTCTGTGGGGGAAGGGAAGCTCAGGACGGTGGTGGACTCGAGGTTCCCGCTGGGCGACGCGGGCGAAGGCGTGCAGAAGAGCATCGACGGCCACGCCACCGGCAAGATAGTCGTTGAGATGGAAGGGTGATAGTATCATGTTGGCATGTTCGGTTGTTCTTGTTTGTTCTGGTGGAAACTTACATTGGTTGGACATACAATACAGATAGGGGAATACTAGTCAGTTTGGCATCTTTTAGTTTGGA] [+] EMBL BI801889 [CGAGGCCCGCCATGCGCAGCCCCTTCGGGGAGGAGGTACGACGGCGTCAGTGCACTGCACCGTTCAGGCGTCGGTTGTCCATGGCTGTTCGAGCCGCTGGATGGCAGCCCCTGCGGGAAGGTGATCGACATCACGCGCCAACTTCTCAGCCATGCTCACCTCGGCATCTGCACGCGGTGACGCTGCAGCGCGGAAGCGGGCTGGTGCCAGCTGCTTGCTGTCAGCCAGAACAAGTCCGACCTGGAGTTCTTGTCAGGTTCTGTGGGGGAAGGGAAGCTCAGGACGGTGGTGGACTCGAGGTTCCCGCTGGGCGACGCGGGCGAAGGCGTGCAGAAGAGCATCGACGGCCACGCCACCGGCAAGATAGTCGTTGAGATGGAAGGGTGATAGTATCATGTTGGCATGTTCGGTTGTTCTTGTTTGTTCTGGTGGAAACTTACATTGGTTGGACATACAATACAGATAGGGGAATACTAGTCAGTTTGGCATCTTTTAGTTTGGA] consensusID : consensus_3899#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 468 fasta sequence [CCATGCTCACCTCGGCGCTGCACGCGGTGACGCTGCGGCGGAAGCGGCTGGTGCCGCTGCTGCTGTCGCCGAACAAGGCCGACCTGGAGTTCATTGGTCGGGCTGGTGGGGGAAGGGAAGCTCAGGACGGTGGTGGACTCGAGGTTCCCGCTGGGCGACGCGGCGAAGGCGTGGCAGAAGAGCATCGACGGCCACGCCACCGGCAAGATAGTCGTTGAGATGGAAGGGTGATAGTATCATGTTGGCATGTTCGGTTGTTCTTGTTTGTTCGTGGGTGGAAACNTACATTCGGTTGGAACATAACAATACAGAATAGGGAATACTAGTCAGTTTGGCATCTGTTTAGTTTGATGATATGACTTGGTGATGATATATACTCGAGATTTGTTTCTCTCTTCTGCGTTTTGAAGAATTTAGGAGCTGTAAATCTGAGGGCATTATATATCGAGATTACTTCTGCTTCAAAAA] [+] EMBL BQ908923 [CCATGCTCACCTCGGCGCTGCACGCGGTGACGCTGCGGCGGAAGCGGCTGGTGCCGCTGCTGCTGTCGCCGAACAAGGCCGACCTGGAGTTCATTGGTCGGGCTGGTGGGGGAAGGGAAGCTCAGGACGGTGGTGGACTCGAGGTTCCCGCTGGGCGACGCGGCGAAGGCGTGGCAGAAGAGCATCGACGGCCACGCCACCGGCAAGATAGTCGTTGAGATGGAAGGGTGATAGTATCATGTTGGCATGTTCGGTTGTTCTTGTTTGTTCGTGGGTGGAAACNTACATTCGGTTGGAACATAACAATACAGAATAGGGAATACTAGTCAGTTTGGCATCTGTTTAGTTTGATGATATGACTTGGTGATGATATATACTCGAGATTTGTTTCTCTCTTCTGCGTTTTGAAGAATTTAGGAGCTGTAAATCTGAGGGCATTATATATCGAGATTACTTCTGCTTCAAAAA] consensusID : consensus_3899#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 327 fasta sequence [GGGGANGANGTNCGACNGCGTCNTGCACTGCACCGTCGGCNTNTGNTTTTTTNCTTTCGANCCGCNGATGGCGCCCCNCGGGAAGGTGATCGACATCACGCCCAACTTCTCAGCCATGCCTCACCTCGGCGCTGCANNCTGTGACCCTNCNGCGGAANCNGNTGGTGCCGCTCTGCTGTCCCCNAACAANGCCNACCTGGAATTCTTTGTCTGGCTGGTNGGGGAACGGAACTCACGACGGTGGTGGANTCCAAGGGGGGCCNGTACCAATTCCNCCTATAATNAATCTTATTACATTCATTGGGCCGTCGTTTACAAACCTCCTNA] [+] EMBL AA752967 [GGGGANGANGTNCGACNGCGTCNTGCACTGCACCGTCGGCNTNTGNTTTTTTNCTTTCGANCCGCNGATGGCGCCCCNCGGGAAGGTGATCGACATCACGCCCAACTTCTCAGCCATGCCTCACCTCGGCGCTGCANNCTGTGACCCTNCNGCGGAANCNGNTGGTGCCGCTCTGCTGTCCCCNAACAANGCCNACCTGGAATTCTTTGTCTGGCTGGTNGGGGAACGGAACTCACGACGGTGGTGGANTCCAAGGGGGGCCNGTACCAATTCCNCCTATAATNAATCTTATTACATTCATTGGGCCGTCGTTTACAAACCTCCTNA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3899#0 CGAGGCCCGCCATGCGCAGCCCCTTCGGGGAGGAGGTACGACGGCGTCAGTGCACTGCAC 60 consensus_3899#1 ------------------------------------------------------------ consensus_3899#2 ------------------------------------------------------------ consensus_3899#0 CGTTCAGGCGTCGGTTGTCCATGGCTGTTCGAGCCGCTGGATGGCAGCCCCTGCGGGAAG 120 consensus_3899#1 ------------------------------------------------------------ consensus_3899#2 ------------------------------------------------------------ consensus_3899#0 GTGATCGACATCACGCGCCAACTTCTCAGCCATGCTCACCTCGGCATCTGCACGCGGTGA 180 consensus_3899#1 -----------------------------CCATGCTCACCTCGGCG-CTGCACGCGGTGA 30 consensus_3899#2 ------------------------------------------------------------ consensus_3899#0 CGCTGCAGCGCGGAAGCGGGCTGGTGCCAGCTGCTTGCTGTCAGCCAGAACAAGTCCGAC 240 consensus_3899#1 CGCTGCGGC--GGAAGCGG-CTGGTGCC-GCTGCT-GCTGTCGCC--GAACAAGGCCGAC 83 consensus_3899#2 -----------GGGGANGA---NGTNCG-ACNGCGTCNTG-CACT----GCACCGTCGGC 40 ** * ** * * ** ** * ** ** * consensus_3899#0 CTGGAGTTC-TTGTCAGGTTCTGTGGGGGAAGGGAAGCTCAGGACGGTGGTGGACTCGAG 299 consensus_3899#1 CTGGAGTTCATTGGTCGGGCTGGTGGGGGAAGGGAAGCTCAGGACGGTGGTGGACTCGAG 143 consensus_3899#2 NTNTGNTTTTTTNCTTTCGANC-CGCNGATGGCGCCCCNCGGGAAGGTGATCGACA---- 95 * ** ** * * * * * * *** **** * *** consensus_3899#0 GTTCCCGCTGGGCGACGCGGGCGAAGGCGTG-CAGAAGAGCATCGACGGCCACGCCACCG 358 consensus_3899#1 GTTCCCGCTGGGCGACGCGG-CGAAGGCGTGGCAGAAGAGCATCGACGGCCACGCCACCG 202 consensus_3899#2 --TCACGCCCAACTTCTCAG-CCATGCCTCACCTCGGCGCTGCANNCTGTGACCCTNCNG 152 ** *** * * * * * * * * * * * ** * * * consensus_3899#0 GCAAGATAGTCGTTGAGATGGAAGGGTGATAGTATCATGTTGGCATGTTCGGTTGTTCTT 418 consensus_3899#1 GCAAGATAGTCGTTGAGATGGAAGGGTGATAGTATCATGTTGGCATGTTCGGTTGTTCTT 262 consensus_3899#2 CGGAANCNGNTGGTGCCGCTCTGCTGTCCCCNAACAANGCCNACCTGGAATTCTTTGTCT 212 * * * ** ** * * * * ** * * * consensus_3899#0 GTTTGTTCT--GGTGGAAACTTACATT-GGTTGGA-CATA-CAATACAGATAGGGGAATA 473 consensus_3899#1 GTTTGTTCGTGGGTGGAAACNTACATTCGGTTGGAACATAACAATACAGAATAGGGAATA 322 consensus_3899#2 GGCTGGTNGGGGAACGGAACTCACGAC--GGTGGTGGANTCCAA--------GGGGGGCC 262 * ** * * * *** ** * *** * *** *** consensus_3899#0 CTAGTCAGTTTGGCATCT-TTTAGTTTGGA------------------------------ 502 consensus_3899#1 CTAGTCAGTTTGGCATCTGTTTAGTTTGATGATATGACTTGGTGATGATATATACTCGAG 382 consensus_3899#2 NGTACCAATTCCNCCTATAATNAATCTTATTACATTCATTGG-GCCGTCGTTTAC---AA 318 ** ** * * * * * * * consensus_3899#0 ------------------------------------------------------------ consensus_3899#1 ATTTGTTTCTCTCTTCTGCGTTTTGAAGAATTTAGGAGCTGTAAATCTGAGGGCATTATA 442 consensus_3899#2 ACCTCCTNA--------------------------------------------------- 327 consensus_3899#0 -------------------------- consensus_3899#1 TATCGAGATTACTTCTGCTTCAAAAA 468 consensus_3899#2 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||