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Oryza sativa
cluster # 390 cluster # 390       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_390#0 length = 1042 sequences # 2  

consensusID : consensus_390#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1042
fasta sequence
                              [ACTAAGAGTATTTTTGACGTGTTTACCGGAATGTATTTCCGCTATTGCTCCGAAATGGTTTAGATAGCAAGGAGGCCGCAGAGAAGTGGAGAGGACTCACGAATCACGATCCATTTCTATCTTGAGGGAATTGGGGATAGCAAAAGTCAGTGAAAAGGGCCAGATGACAAGCATGGACAAGGCAGCAAATGTGGTATTGGATATTGAAGGGCTGCCTCAGCAACCTGATAAATGCTGCACTGGAAGTCCAAAAATGACTAGAGCCCTATCTCGCAAGGGCTCAAATCGCATGGAAAGGAGGAGCGGTGAAGAGCAGGAACAAGATGACTTGGTGAAGAAACTTATTATTAAGGTTGTGCCATCTCAGTTGGAGCAGCTTAAGATGCCCCTGGTGCAGAACAAAGCCTTGGTCACTCCACAATCACAATGTGCTGCCTGTGCACCTATTCTAACTGACTCTGGGGAAGGAAGGAACAAGAAGTTTAATCGACTTACCTCGGTTCACCCCCGGAAAATCCTACTGTTCTTTGCAACTCTGTCGAGCGTGGGCACAATGATACTGATATACTTCACGCTCGCAATCAACGGTGGCAAAGCGGAGGCGTAGTCGTCACCGGAGCGAAACACGACAACGGTTTCAGAAGTGCATTTCATAGCTGGAATTTTCGCTTCTCGTTATCAGATTTTGGTTTGTTTGGGAGGAGAGAACTGGAGGAGGAAGCAACAGTAGCAGCAGCAATGATGCAGCCAGGC-TCTCATGCCTGAC--ACACAATGCTGGGAGTGTTGCTCGATCAGTGCTCCATTGTCACCTTTGCCTGACCTGATCTCCCTGAATTCTTTTGATCTGTACATGTAAATTGCTGTGAGGCCTTTGTTGAGAGGTAGAGAGAGAGAGAAAGAGAGATCCATGGATTGTTGTTGGTGTAAATGAGCTGGGGCGAAGCTATCCATTTCTGCCATGCGAGTCCCAGCTTAGCTGTAAAAGATTTGAAGGGAATAATTATGCCTTTGTGGAGTTGCAGTGAAAAAAAAAAAAAAAAAA]

[+] EMBL AK101246             [ACTAAGAGTATTTTTGACGTGTTTACCGGAATGTATTTCCGCTATTGCTCCGAAATGGTTTAGATAGCAAGGAGGCCGCAGAGAAGTGGAGAGGACTCACGAATCACGATCCATTTCTATCTTGAGGGAATTGGGGATAGCAAAAGTCAGTGAAAAGGGCCAGATGACAAGCATGGACAAGGCAGCAAATGTGGTATTGGATATTGAAGGGCTGCCTCAGCAACCTGATAAATGCTGCACTGGAAGTCCAAAAATGACTAGAGCCCTATCTCGCAAGGGCTCAAATCGCATGGAAAGGAGGAGCGGTGAAGAGCAGGAACAAGATGACTTGGTGAAGAAACTTATTATTAAGGTTGTGCCATCTCAGTTGGAGCAGCTTAAGATGCCCCTGGTGCAGAACAAAGCCTTGGTCACTCCACAATCACAATGTGCTGCCTGTGCACCTATTCTAACTGACTCTGGGGAAGGAAGGAACAAGAAGTTTAATCGACTTACCTCGGTTCACCCCCGGAAAATCCTACTGTTCTTTGCAACTCTGTCGAGCGTGGGCACAATGATACTGATATACTTCACGCTCGCAATCAACGGTGGCAAAGCGGAGGCGTAGTCGTCACCGGAGCGAAACACGACAACGGTTTCAGAAGTGCATTTCATAGCTGGAATTTTCGCTTCTCGTTATCAGATTTTGGTTTGTTTGGGAGGAGAGAACTGGAGGAGGAAGCAACAGTAGCAGCAGCAATGATGCAGCCAGGC TCTCATGCCTGAC  ACACAATGCTGGGAGTGTTGCTCGATCAGTGCTCCATTGTCACCTTTGCCTGACCTGATCTCCCTGAATTCTTTTGATCTGTACATGTAAATTGCTGTGAGGCCTTTGTTGAGAGGTAGAGAGAGAGAGAAAGAGAGATCCATGGATTGTTGTTGGTGTAAATGAGCTGGGGCGAAGCTATCCATTTCTGCCATGCGAGTCCCAGCTTAGCTGTAAAAG                                                         ]
[-] EMBL CA760221             [                                                                                                                                                                                                                                                                                                                                                                              GTTGGAGCAGCCTAAGATGGCCCTGGTGCAGAACAAAGCCTTTGTCACTCCACAATCACAATGTGCTGCCTGTGCACCTATTCTAACTGACTTTGGGGAAGGAAGGAACAAGAAGTTCCATCGGCTTAATTCGGTTCACCCCCGGAAAATCCTACTTTTCTTTGCAACTCTGTCGAGCGTGGGCACAATGATACTGATATACTGCACGCTCGCAATCAACGGTGGCAAAGAGGAGGCGTTGTTGTTTCCGGAGCGAAACACGACAACGGTTTTAGAAGTGCATTTTATAGCTGGAATTTTCGCTTCTCGGTATCAGATTTTGGTTTGTTTGGGAGGAGAGAACTGGAGGAGGAAGCAACAGTAGCAGCAGCAATGATGCAGCCCGGCTTTTCATGCCTGACAGACCCAATGCTGGGAGGGTTGCTCGATCAATGCTCCATTGTCACCTTTGCCTGACCTGATCTCCCTGAATTTTTTTGATCTGTACATGTAAAATGCTGTGAGGCCTTTGTTGAGAGGTAGAGAGAGAGAGAAAGAGAGATCCCTGGGTTGTTGGTGGGGTAAATGAGCTGGGGCGAAGCTATCCCTTTTTGCCATGCGAGTCCCAGGTTAGCTGTAAAAGATTTGAAGGGAATAATTATGCCTTTGTGGAGTTGCAGTGAAAAAAAAAAAAAAAAAA]


>consensus_390#0 ACTAAGAGTATTTTTGACGTGTTTACCGGAATGTATTTCCGCTATTGCTCCGAAATGGTT TAGATAGCAAGGAGGCCGCAGAGAAGTGGAGAGGACTCACGAATCACGATCCATTTCTAT CTTGAGGGAATTGGGGATAGCAAAAGTCAGTGAAAAGGGCCAGATGACAAGCATGGACAA GGCAGCAAATGTGGTATTGGATATTGAAGGGCTGCCTCAGCAACCTGATAAATGCTGCAC TGGAAGTCCAAAAATGACTAGAGCCCTATCTCGCAAGGGCTCAAATCGCATGGAAAGGAG GAGCGGTGAAGAGCAGGAACAAGATGACTTGGTGAAGAAACTTATTATTAAGGTTGTGCC ATCTCAGTTGGAGCAGCTTAAGATGCCCCTGGTGCAGAACAAAGCCTTGGTCACTCCACA ATCACAATGTGCTGCCTGTGCACCTATTCTAACTGACTCTGGGGAAGGAAGGAACAAGAA GTTTAATCGACTTACCTCGGTTCACCCCCGGAAAATCCTACTGTTCTTTGCAACTCTGTC GAGCGTGGGCACAATGATACTGATATACTTCACGCTCGCAATCAACGGTGGCAAAGCGGA GGCGTAGTCGTCACCGGAGCGAAACACGACAACGGTTTCAGAAGTGCATTTCATAGCTGG AATTTTCGCTTCTCGTTATCAGATTTTGGTTTGTTTGGGAGGAGAGAACTGGAGGAGGAA GCAACAGTAGCAGCAGCAATGATGCAGCCAGGCTCTCATGCCTGACACACAATGCTGGGA GTGTTGCTCGATCAGTGCTCCATTGTCACCTTTGCCTGACCTGATCTCCCTGAATTCTTT TGATCTGTACATGTAAATTGCTGTGAGGCCTTTGTTGAGAGGTAGAGAGAGAGAGAAAGA GAGATCCATGGATTGTTGTTGGTGTAAATGAGCTGGGGCGAAGCTATCCATTTCTGCCAT GCGAGTCCCAGCTTAGCTGTAAAAGATTTGAAGGGAATAATTATGCCTTTGTGGAGTTGC AGTGAAAAAAAAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)