These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3909#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 388 fasta sequence [TTTTTTTAACTTGAGACGATCGGACTCCTAATTGCAGCTCATGATTTTTTTAAAAAAATATATATCCAAGCGAACTCCCACAGTAAATTTCATCTTAACCCTCCATGAGCTCCATGGCCTGCCGGGAAGCACCGCGTCCTGTTACTGAGTGGCTCCCCCATGGCGAGGCATCGGACACAGACGGCGACGTGCTGGCGGACGGGGATGGCAGCTCGGAGGGCGGCGTCCTCCTTGGCGATGGCGGCGGTGAGCTTGGTGTAGAGGTAGTCGACGTTGGGGCGGGACATGCGGAAGGTCGCGGCGCCAGGAGAGGGCGATCGAGACATGGAGAATCCACTCGTCTCCCTCCTCACCTCCACCCATGGCGGTCATGGCGACCCCGCAACAG] [+] EMBL CF320868 [TTTTTTTAACTTGAGACGATCGGACTCCTAATTGCAGCTCATGATTTTTTTAAAAAAATATATATCCAAGCGAACTCCCACAGTAAATTTCATCTTAACCCTCCATGAGCTCCATGGCCTGCCGGGAAGCACCGCGTCCTGTTACTGAGTGGCTCCCCCATGGCGAGGCATCGGACACAGACGGCGACGTGCTGGCGGACGGGGATGGCAGCTCGGAGGGCGGCGTCCTCCTTGGCGATGGCGGCGGTGAGCTTGGTGTAGAGGTAGTCGACGTTGGGGCGGGACATGCGGAAGGTCGCGGCGCCAGGAGAGGGCGATCGAGACATGGAGAATCCACTCGTCTCCCTCCTCACCTCCACCCATGGCGGTCATGGCGACCCCGCAACAG] consensusID : consensus_3909#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 292 fasta sequence [TAACGGCATGACAGTGTTTTTTTTTTTTTTTTTTTGGACTCCTAATTGCAGCTCATGATTTTTTTAAAAAAATATATATCCAAGCGAACTCCCACAGTAAATTTCATCTTAACCCTCCATGAGCTCCATGGCCTGCCGGGAAGCACCGCGTCCTGTTACTGAGTGGCTCCCCCATGGCGAGGCATCGGACACAGACGGCGACGTGCTGGCGGACGGGGATGGCAGCTCGGAGGGCGGCGTCCTCCTTGGCGATGGCGGCGGTGAGCTTGGTGTAAAGGTAGTCGACGTTGGG] [+] EMBL CF320621 [TAACGGCATGACAGTGTTTTTTTTTTTTTTTTTTTGGACTCCTAATTGCAGCTCATGATTTTTTTAAAAAAATATATATCCAAGCGAACTCCCACAGTAAATTTCATCTTAACCCTCCATGAGCTCCATGGCCTGCCGGGAAGCACCGCGTCCTGTTACTGAGTGGCTCCCCCATGGCGAGGCATCGGACACAGACGGCGACGTGCTGGCGGACGGGGATGGCAGCTCGGAGGGCGGCGTCCTCCTTGGCGATGGCGGCGGTGAGCTTGGTGTAAAGGTAGTCGACGTTGGG] consensusID : consensus_3909#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 279 fasta sequence [TTTTTTTTTTTTTTTCTTTTTTTTTTTGGAAAACATATCCCTATTTGAAACCGGTTGGTCACTTTTGGGCATACATAAGGGATCATATAAAAAATTTGTTTAAAAAAACTCCCATATTAACTTGAAACCATCGGACTCCTAATTGCAGCTCATGATTTTTTTAAAAAAATATATATTCCAACGAACTCCCACAGTAAATTTCATTTTAACCCTTCATGAACTCCATGGCCTGCCGGGAAACACCCCGTCCTGTTACTGAATGGGTCCCCCATGGGGAGG] [+] EMBL CF311472 [TTTTTTTTTTTTTTTCTTTTTTTTTTTGGAAAACATATCCCTATTTGAAACCGGTTGGTCACTTTTGGGCATACATAAGGGATCATATAAAAAATTTGTTTAAAAAAACTCCCATATTAACTTGAAACCATCGGACTCCTAATTGCAGCTCATGATTTTTTTAAAAAAATATATATTCCAACGAACTCCCACAGTAAATTTCATTTTAACCCTTCATGAACTCCATGGCCTGCCGGGAAACACCCCGTCCTGTTACTGAATGGGTCCCCCATGGGGAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3909#0 ------------------------------------------------------------ consensus_3909#1 ------------------------------------------------------------ consensus_3909#2 TTTTTTTTTTTTTTTCTTTTTTTTTTTGGAAAACATATCCCTATTTGAAACCGGTTGGTC 60 consensus_3909#0 ---------------------------------------------------TTTTTTTAA 9 consensus_3909#1 -------------------------------------TAACGGCATGACAGTGTTTTTTT 23 consensus_3909#2 ACTTTTGGGCATACATAAGGGATCATATAAAAAATTTGTTTAAAAAAACTCCCATATTAA 120 * ** consensus_3909#0 CTTGAGACGATCGGACTCCTAATTGCAGCTCATGATTTTTTTAAAAAAATATATATCCAA 69 consensus_3909#1 TTTTTTTTTTTTGGACTCCTAATTGCAGCTCATGATTTTTTTAAAAAAATATATATCCAA 83 consensus_3909#2 CTTGAAACCATCGGACTCCTAATTGCAGCTCATGATTTTTTTAAAAAAATATATATTCCA 180 ** * ******************************************** * * consensus_3909#0 GCGAACTCCCACAGTAAATTTCATCTTAACCCTCCATGAGCTCCATGGCCTGCCGGGAAG 129 consensus_3909#1 GCGAACTCCCACAGTAAATTTCATCTTAACCCTCCATGAGCTCCATGGCCTGCCGGGAAG 143 consensus_3909#2 ACGAACTCCCACAGTAAATTTCATTTTAACCCTTCATGAACTCCATGGCCTGCCGGGAAA 240 *********************** ******** ***** ******************* consensus_3909#0 CACCGCGTCCTGTTACTGAGTGGCTCCCCCATGGCGAGGCATCGGACACAGACGGCGACG 189 consensus_3909#1 CACCGCGTCCTGTTACTGAGTGGCTCCCCCATGGCGAGGCATCGGACACAGACGGCGACG 203 consensus_3909#2 CACCCCGTCCTGTTACTGAATGGGTCCCCCATGGGGAGG--------------------- 279 **** ************** *** ********** **** consensus_3909#0 TGCTGGCGGACGGGGATGGCAGCTCGGAGGGCGGCGTCCTCCTTGGCGATGGCGGCGGTG 249 consensus_3909#1 TGCTGGCGGACGGGGATGGCAGCTCGGAGGGCGGCGTCCTCCTTGGCGATGGCGGCGGTG 263 consensus_3909#2 ------------------------------------------------------------ consensus_3909#0 AGCTTGGTGTAGAGGTAGTCGACGTTGGGGCGGGACATGCGGAAGGTCGCGGCGCCAGGA 309 consensus_3909#1 AGCTTGGTGTAAAGGTAGTCGACGTTGGG------------------------------- 292 consensus_3909#2 ------------------------------------------------------------ consensus_3909#0 GAGGGCGATCGAGACATGGAGAATCCACTCGTCTCCCTCCTCACCTCCACCCATGGCGGT 369 consensus_3909#1 ------------------------------------------------------------ consensus_3909#2 ------------------------------------------------------------ consensus_3909#0 CATGGCGACCCCGCAACAG 388 consensus_3909#1 ------------------- consensus_3909#2 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||